ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal33n24
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1AKAP2_MOUSE (O54931) A-kinase anchor protein 2 (Protein kinase A... 30 4.9
2MDH_BACIS (Q59202) Malate dehydrogenase (EC 1.1.1.37) 30 6.5

>AKAP2_MOUSE (O54931) A-kinase anchor protein 2 (Protein kinase A-anchoring|
           protein 2) (PRKA2) (AKAP-2) (AKAP expressed in kidney
           and lung) (AKAP-KL)
          Length = 885

 Score = 30.4 bits (67), Expect = 4.9
 Identities = 20/64 (31%), Positives = 25/64 (39%)
 Frame = +1

Query: 199 HSSSVVSEIRRTSYRSSPPFPILASIPGPKKEVNFACLFSKSDSPNDLASNSSTKQYFPS 378
           HS +      + S R  PP   L+ IP  +           +D P DL  NS      PS
Sbjct: 95  HSVTEAEPTEKASGRQVPPHIELSRIPSDRMAEGERANGHSTDQPQDLLGNSLQAPASPS 154

Query: 379 SVTS 390
           S TS
Sbjct: 155 SSTS 158



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>MDH_BACIS (Q59202) Malate dehydrogenase (EC 1.1.1.37)|
          Length = 312

 Score = 30.0 bits (66), Expect = 6.5
 Identities = 21/89 (23%), Positives = 42/89 (47%), Gaps = 1/89 (1%)
 Frame = -1

Query: 428 IPRRSAPILQKIQEVTDDGKYCLVLEFEAKSLGLSDFEKRQAKFTSFFGPGIEAKIGKGG 249
           IP+   P   K  ++ +      VL F+A  +G S++E+           GI  K G   
Sbjct: 37  IPQAENPTKGKALDMLESSP---VLGFDANIIGTSNYEETADSDIVVITAGIARKPGMSR 93

Query: 248 DDLYEV-RLISETTEEE*QRLRPDSLLLI 165
           DDL +  + + ++  +E  +  P+S++++
Sbjct: 94  DDLVQTNQKVMKSVTKEVVKYSPNSIIIV 122


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 85,165,615
Number of Sequences: 219361
Number of extensions: 1713157
Number of successful extensions: 4365
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 4266
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4356
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6370891296
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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