ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal33n22 |
|---|---|
| Clone Library Name | barley_pub |
>COIA1_MOUSE (P39061) Collagen alpha-1(XVIII) chain precursor [Contains:| Endostatin] Length = 1774 Score = 30.8 bits (68), Expect = 1.9 Identities = 21/48 (43%), Positives = 25/48 (52%), Gaps = 1/48 (2%) Frame = -1 Query: 266 VILLYN-PGRGRPPDG*SL*YRLPAFXVQWQHIYTARWSPDGGPLAAY 126 + LLY PG + G S +RLPAF QW H S DGG +A Y Sbjct: 586 ISLLYTEPGASQTQTGAS--FRLPAFVGQWTHF---ALSVDGGSVALY 628
>ATG27_ASHGO (Q757Z8) Autophagy-related protein 27 precursor| Length = 297 Score = 30.8 bits (68), Expect = 1.9 Identities = 16/42 (38%), Positives = 20/42 (47%) Frame = +1 Query: 223 PSGGRPRPGLYRSITQHLPEHPSRLHLNPPHETSIRAWEQFF 348 PSGGR + YR +P+ SR H+ TS W FF Sbjct: 244 PSGGRIQGQFYRGTKGKIPDFLSRYHMLCVIITSAHLWTAFF 285
>POLG_TMEVB (P08544) Genome polyprotein [Contains: Coat protein VP4 (P1A); Coat| protein VP2 (P1B); Coat protein VP3 (P1C); Coat protein VP1 (P1D); Picornain 2A (EC 3.4.22.29) (Core protein P2A); Core protein P2B; Core protein P2C; Core protein P3A; Genome Length = 2303 Score = 30.4 bits (67), Expect = 2.5 Identities = 13/26 (50%), Positives = 16/26 (61%) Frame = -3 Query: 237 SPSRWLKLIVQTTGFXGAMAAYLYGP 160 SP W KLI++TT F A YL+ P Sbjct: 1118 SPEFWSKLILKTTKFIAASVLYLHNP 1143
>POLG_TMEVD (P13899) Genome polyprotein [Contains: Coat protein VP4 (P1A); Coat| protein VP2 (P1B); Coat protein VP3 (P1C); Coat protein VP1 (P1D); Picornain 2A (EC 3.4.22.29) (Core protein P2A); Core protein P2B; Core protein P2C; Core protein P3A; Genome Length = 2301 Score = 30.4 bits (67), Expect = 2.5 Identities = 13/26 (50%), Positives = 16/26 (61%) Frame = -3 Query: 237 SPSRWLKLIVQTTGFXGAMAAYLYGP 160 SP W KLI++TT F A YL+ P Sbjct: 1116 SPEFWSKLILKTTKFIAASVLYLHNP 1141
>FUCO_RAT (P17164) Tissue alpha-L-fucosidase precursor (EC 3.2.1.51)| (Alpha-L-fucosidase I) (Alpha-L-fucoside fucohydrolase) Length = 462 Score = 30.0 bits (66), Expect = 3.3 Identities = 13/29 (44%), Positives = 18/29 (62%) Frame = -2 Query: 103 RFNNFYSLFCLIEWFHSLFFKQKNNSLRT 17 R+ ++SLF EWFH L+ K N L+T Sbjct: 174 RYGLYHSLF---EWFHPLYLLDKKNGLKT 199
>FUCO2_PONPY (Q5RFI5) Plasma alpha-L-fucosidase precursor (EC 3.2.1.51)| (Alpha-L-fucosidase 2) (Alpha-L-fucoside fucohydrolase 2) Length = 465 Score = 29.6 bits (65), Expect = 4.3 Identities = 13/26 (50%), Positives = 18/26 (69%) Frame = -2 Query: 103 RFNNFYSLFCLIEWFHSLFFKQKNNS 26 RF +YSLF EWFH LF + +++S Sbjct: 174 RFGLYYSLF---EWFHPLFLEDESSS 196
>MYH14_HUMAN (Q7Z406) Myosin-14 (Myosin heavy chain, nonmuscle IIc) (Nonmuscle| myosin heavy chain IIc) (NMHC II-C) Length = 1995 Score = 29.6 bits (65), Expect = 4.3 Identities = 13/25 (52%), Positives = 17/25 (68%) Frame = +1 Query: 223 PSGGRPRPGLYRSITQHLPEHPSRL 297 P GGRPR G++R++ Q E SRL Sbjct: 657 PPGGRPRRGMFRTVGQLYKESLSRL 681
>FUCO2_HUMAN (Q9BTY2) Plasma alpha-L-fucosidase precursor (EC 3.2.1.51)| (Alpha-L-fucosidase 2) (Alpha-L-fucoside fucohydrolase 2) Length = 467 Score = 29.6 bits (65), Expect = 4.3 Identities = 13/26 (50%), Positives = 18/26 (69%) Frame = -2 Query: 103 RFNNFYSLFCLIEWFHSLFFKQKNNS 26 RF +YSLF EWFH LF + +++S Sbjct: 176 RFGLYYSLF---EWFHPLFLEDESSS 198
>AMIF_PSESM (Q887D9) Formamidase (EC 3.5.1.49) (Formamide amidohydrolase)| Length = 338 Score = 29.6 bits (65), Expect = 4.3 Identities = 14/33 (42%), Positives = 17/33 (51%) Frame = +3 Query: 336 GTILLPWEDLVGRFKSSQCGSSTLEKXFATTPS 434 G LPWE+ V CG +T E+ F TPS Sbjct: 302 GQYRLPWENDVVHTDGRSCGFATPEREFKPTPS 334
>MYH14_MOUSE (Q6URW6) Myosin-14 (Myosin heavy chain, nonmuscle IIc) (Nonmuscle| myosin heavy chain IIc) (NMHC II-C) Length = 2000 Score = 29.6 bits (65), Expect = 4.3 Identities = 13/25 (52%), Positives = 17/25 (68%) Frame = +1 Query: 223 PSGGRPRPGLYRSITQHLPEHPSRL 297 P GGRPR G++R++ Q E SRL Sbjct: 661 PPGGRPRRGMFRTVGQLYKESLSRL 685
>LYS2_PENCH (O74298) L-aminoadipate-semialdehyde dehydrogenase large subunit (EC| 1.2.1.31) (Alpha-aminoadipate reductase) (Alpha-AR) Length = 1409 Score = 29.6 bits (65), Expect = 4.3 Identities = 16/47 (34%), Positives = 21/47 (44%) Frame = +1 Query: 283 HPSRLHLNPPHETSIRAWEQFFFHGKT*LVGSNLPNVDHRPWRSXLQ 423 HP +N H T F G L G N+P VD+ PW + L+ Sbjct: 1248 HPPATGVNVAHVTGHPRLRFNQFLGALELYGYNVPQVDYVPWSTSLE 1294
>HEMH_XANCP (Q8P3H6) Ferrochelatase (EC 4.99.1.1) (Protoheme ferro-lyase) (Heme| synthetase) Length = 318 Score = 29.3 bits (64), Expect = 5.6 Identities = 13/28 (46%), Positives = 17/28 (60%) Frame = -1 Query: 170 YTARWSPDGGPLAAYTRTVVHPQIQQLL 87 Y W PDG PLA YTR + +QQ++ Sbjct: 66 YAKVWLPDGSPLAVYTRRLTE-GLQQVM 92
>SYI_HALSA (Q9HN97) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA| ligase) (IleRS) Length = 1070 Score = 29.3 bits (64), Expect = 5.6 Identities = 13/27 (48%), Positives = 16/27 (59%) Frame = +2 Query: 176 AAIAPXKPVVCTISFSHLEGDRGQDYI 256 A +AP P V +SHL GDRG D + Sbjct: 777 ALLAPYAPFVTEELYSHLTGDRGYDTV 803
>KI67_HUMAN (P46013) Antigen KI-67| Length = 3256 Score = 28.5 bits (62), Expect = 9.6 Identities = 13/48 (27%), Positives = 21/48 (43%) Frame = -3 Query: 336 PSSDGSLMRRIQMKPGWVLGQVLSDTPI*SWPRSPSRWLKLIVQTTGF 193 P+ DG +R + P +L T + WPR+P + + GF Sbjct: 1058 PAGDGKSIRTFKESPKQILDPAARVTGMKKWPRTPKEEAQSLEDLAGF 1105
>FUCO_CANFA (P48300) Tissue alpha-L-fucosidase precursor (EC 3.2.1.51)| (Alpha-L-fucosidase I) (Alpha-L-fucoside fucohydrolase) Length = 465 Score = 28.5 bits (62), Expect = 9.6 Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 1/33 (3%) Frame = -2 Query: 112 SIHRFNNFYSLF-CLIEWFHSLFFKQKNNSLRT 17 ++ + N Y L+ L+EWFH L+ K N+ +T Sbjct: 171 ALRKRNIRYGLYHSLLEWFHPLYLLDKKNNFKT 203
>FUCO_MOUSE (Q99LJ1) Tissue alpha-L-fucosidase precursor (EC 3.2.1.51)| (Alpha-L-fucosidase I) (Alpha-L-fucoside fucohydrolase) Length = 452 Score = 28.5 bits (62), Expect = 9.6 Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 1/33 (3%) Frame = -2 Query: 112 SIHRFNNFYSLF-CLIEWFHSLFFKQKNNSLRT 17 ++ + N Y L+ L+EWFH L+ K N +T Sbjct: 157 AVRKRNIRYGLYHSLLEWFHPLYLLDKKNGFKT 189 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 77,426,622 Number of Sequences: 219361 Number of extensions: 1753108 Number of successful extensions: 3954 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 3855 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3953 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3246866728 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
