ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal33n20
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1EPB42_HUMAN (P16452) Erythrocyte membrane protein band 4.2 (Eryt... 29 8.1

>EPB42_HUMAN (P16452) Erythrocyte membrane protein band 4.2 (Erythrocyte protein|
           4.2) (P4.2)
          Length = 690

 Score = 28.9 bits (63), Expect = 8.1
 Identities = 24/88 (27%), Positives = 36/88 (40%)
 Frame = -2

Query: 449 FQPRNPEDALAAFSVLSRSKIPGVVXXXXXXRIPDRKSWLVGLSDADAADAAERFSEQWP 270
           F P   + AL A +    SKI           + DRK W   + + DA       S   P
Sbjct: 51  FLPALKKVALTAQTGEQPSKINRTQATFPISSLGDRKWWSAVVEERDAQSWT--ISVTTP 108

Query: 269 TDLVVGNHDCRDYTNGLVEVLTGQKRVL 186
            D V+G++      +G  ++L GQ  +L
Sbjct: 109 ADAVIGHYSLLLQVSGRKQLLLGQFTLL 136


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,883,677
Number of Sequences: 219361
Number of extensions: 930215
Number of successful extensions: 2688
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 2636
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2688
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3581144924
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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