ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal33n13
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK068120.1| Oryza sativa (japonica cultivar-group) cDNA clon... 123 7e-25
2dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 100 1e-17
3dbj|AP003443.4| Oryza sativa (japonica cultivar-group) genomic D... 100 1e-17
4dbj|AP003924.2| Oryza sativa (japonica cultivar-group) genomic D... 100 1e-17
5ref|NM_193489.1| Oryza sativa (japonica cultivar-group), predic... 76 2e-10
6ref|NM_001017214.2| Xenopus tropicalis translocase of outer mito... 42 2.2
7emb|BX119314.13| Zebrafish DNA sequence from clone DKEY-18H19 in... 42 2.2
8gb|AC154206.2| Mus musculus BAC clone RP24-104P20 from 14, compl... 42 2.2
9emb|CR760426.2| Xenopus tropicalis finished cDNA, clone TNeu037g14 42 2.2
10gb|AC154239.3| Mus musculus BAC clone RP24-164C12 from chromosom... 42 2.2
11gb|AC170875.2| Mus musculus BAC clone RP24-266D3 from chromosome... 40 8.6
12gb|AC161609.6| Mus musculus BAC clone RP23-139D15 from chromosom... 40 8.6
13gb|AC146194.2| Pan troglodytes BAC clone CH251-490J23 from Y, co... 40 8.6
14gb|AC146183.3| Pan troglodytes BAC clone CH251-548L16 from Y, co... 40 8.6
15gb|AC138400.12| Mus musculus chromosome 14, clone RP23-260C21, c... 40 8.6
16gb|AE014308.1| Homo sapiens chromosome 13q34 schizophrenia regio... 40 8.6
17gb|AC121865.2| Mus musculus BAC clone RP24-112O1 from 8, complet... 40 8.6
18gb|AC102031.7| Mus musculus chromosome 3, clone RP23-14C8, compl... 40 8.6
19gb|AC146745.20| Medicago truncatula clone mth2-53p19, complete s... 40 8.6
20gb|AC149637.11| Medicago truncatula clone mth2-181h2, complete s... 40 8.6
21emb|Z75741.1|HS107N3 Human DNA sequence from clone RP1-107N3 on ... 40 8.6
22emb|AL365258.24| Human DNA sequence from clone RP11-448G4 on chr... 40 8.6
23emb|AL390857.7| Human DNA sequence from clone RP11-51N22 on chro... 40 8.6
24emb|AL355314.10| Human DNA sequence from clone RP11-598C10 on ch... 40 8.6
25emb|AL136524.24| Human DNA sequence from clone RP11-78L19 on chr... 40 8.6
26gb|AC117507.5| Homo sapiens 3 BAC RP11-137K3 (Roswell Park Cance... 40 8.6
27dbj|BS000624.2| Pan troglodytes chromosome Y clone: PTB-002J03, ... 40 8.6
28dbj|BS000557.1| Pan troglodytes chromosome Y clone:PTB-464M08, c... 40 8.6
29gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence 40 8.6
30gb|AC040968.6| Homo sapiens chromosome 11, clone RP11-372B5, com... 40 8.6
31gb|AC067902.6| Homo sapiens chromosome 11, clone RP11-72C9, comp... 40 8.6
32gb|AC158237.2| Mus musculus BAC clone RP23-142I8 from chromosome... 40 8.6
33gb|AC006376.2|AC006376 Homo sapiens BAC clone RP11-386L3 from Y,... 40 8.6
34gb|AC116317.4| Homo sapiens BAC clone RP11-1406H17 from 4, compl... 40 8.6
35gb|AC019159.8| Homo sapiens BAC clone RP11-56O18 from 2, complet... 40 8.6
36gb|AC123788.7| Homo sapiens chromosome 11, clone RP5-1173A5, com... 40 8.6
37emb|AL929225.6| Zebrafish DNA sequence from clone CH211-250A24, ... 40 8.6
38gb|AC139351.4| Mus musculus BAC clone RP24-156K15 from 8, comple... 40 8.6
39gb|AC000378.1|AC000378 Human Chromosome 11 pac pDJ1173a5, comple... 40 8.6
40dbj|AB209664.1| Homo sapiens mRNA for Hypothetical protein DKFZp... 40 8.6
41emb|Z70042.1|HSU96H11 Human DNA sequence from clone LL0XNC01-96H... 40 8.6 
>dbj|AK068120.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013135L15, full
            insert sequence
          Length = 1611

 Score =  123 bits (62), Expect = 7e-25
 Identities = 149/178 (83%)
 Strand = Plus / Minus

                                                                        
Query: 298  ttctagatcttgtggacactgtacccagcttcttcagtattcaagctgtcgttccagctc 357
            ||||| || ||||||||||| || ||||||||||| || ||||||   ||| ||||| ||
Sbjct: 1056 ttctaaattttgtggacactatatccagcttcttccgttttcaagtcctcgctccagttc 997

                                                                        
Query: 358  tgaaactctgaccctccgaactgtatttccttaatgcccagatgatccgaatttatggtg 417
            ||||| ||   |||||| ||||| | || ||||||||||| |||||| ||||||||||| 
Sbjct: 996  tgaaattcactccctccaaactgcacttgcttaatgcccacatgatctgaatttatggtc 937

                                                                      
Query: 418  gctaatgaattaagcaggacgtccaaaagcaatggatcttgaataccaatgtccaccc 475
            | ||||| ||||||||||| |||||||||||| || || |||||||||||||| ||||
Sbjct: 936  gttaatgcattaagcaggatgtccaaaagcaacggttcgtgaataccaatgtctaccc 879
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 92/106 (86%)
 Strand = Plus / Plus

                                                                            
Query: 406      gaatttatggtggctaatgaattaagcaggacgtccaaaagcaatggatcttgaatacca 465
                ||||||||||| | ||||| ||||||||||| |||||||||||| || || |||||||||
Sbjct: 21149629 gaatttatggtcgttaatgcattaagcaggatgtccaaaagcaacggttcgtgaatacca 21149688

                                                              
Query: 466      atgtccaccctgaggagatcaataagatcaaagcaaagagtcatgg 511
                ||||| ||||||  || | ||||||||| |||| ||||||||||||
Sbjct: 21149689 atgtctaccctgttgaaaacaataagatgaaagtaaagagtcatgg 21149734



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 85/105 (80%)
 Strand = Plus / Plus

                                                                            
Query: 298      ttctagatcttgtggacactgtacccagcttcttcagtattcaagctgtcgttccagctc 357
                ||||| || ||||||||||| || ||||||||||| || ||||||   ||| ||||| ||
Sbjct: 21148293 ttctaaattttgtggacactatatccagcttcttccgttttcaagtcctcgctccagttc 21148352

                                                             
Query: 358      tgaaactctgaccctccgaactgtatttccttaatgcccagatga 402
                ||||| ||   |||||| ||||| | || ||||||||||| ||||
Sbjct: 21148353 tgaaattcactccctccaaactgcacttgcttaatgcccacatga 21148397
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>dbj|AP003443.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:B1144D11
          Length = 157943

 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 92/106 (86%)
 Strand = Plus / Plus

                                                                          
Query: 406    gaatttatggtggctaatgaattaagcaggacgtccaaaagcaatggatcttgaatacca 465
              ||||||||||| | ||||| ||||||||||| |||||||||||| || || |||||||||
Sbjct: 117174 gaatttatggtcgttaatgcattaagcaggatgtccaaaagcaacggttcgtgaatacca 117233

                                                            
Query: 466    atgtccaccctgaggagatcaataagatcaaagcaaagagtcatgg 511
              ||||| ||||||  || | ||||||||| |||| ||||||||||||
Sbjct: 117234 atgtctaccctgttgaaaacaataagatgaaagtaaagagtcatgg 117279



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 85/105 (80%)
 Strand = Plus / Plus

                                                                          
Query: 298    ttctagatcttgtggacactgtacccagcttcttcagtattcaagctgtcgttccagctc 357
              ||||| || ||||||||||| || ||||||||||| || ||||||   ||| ||||| ||
Sbjct: 115838 ttctaaattttgtggacactatatccagcttcttccgttttcaagtcctcgctccagttc 115897

                                                           
Query: 358    tgaaactctgaccctccgaactgtatttccttaatgcccagatga 402
              ||||| ||   |||||| ||||| | || ||||||||||| ||||
Sbjct: 115898 tgaaattcactccctccaaactgcacttgcttaatgcccacatga 115942
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>dbj|AP003924.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:B1064G04
          Length = 186704

 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 92/106 (86%)
 Strand = Plus / Plus

                                                                         
Query: 406   gaatttatggtggctaatgaattaagcaggacgtccaaaagcaatggatcttgaatacca 465
             ||||||||||| | ||||| ||||||||||| |||||||||||| || || |||||||||
Sbjct: 47138 gaatttatggtcgttaatgcattaagcaggatgtccaaaagcaacggttcgtgaatacca 47197

                                                           
Query: 466   atgtccaccctgaggagatcaataagatcaaagcaaagagtcatgg 511
             ||||| ||||||  || | ||||||||| |||| ||||||||||||
Sbjct: 47198 atgtctaccctgttgaaaacaataagatgaaagtaaagagtcatgg 47243



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 85/105 (80%)
 Strand = Plus / Plus

                                                                         
Query: 298   ttctagatcttgtggacactgtacccagcttcttcagtattcaagctgtcgttccagctc 357
             ||||| || ||||||||||| || ||||||||||| || ||||||   ||| ||||| ||
Sbjct: 45802 ttctaaattttgtggacactatatccagcttcttccgttttcaagtcctcgctccagttc 45861

                                                          
Query: 358   tgaaactctgaccctccgaactgtatttccttaatgcccagatga 402
             ||||| ||   |||||| ||||| | || ||||||||||| ||||
Sbjct: 45862 tgaaattcactccctccaaactgcacttgcttaatgcccacatga 45906
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>ref|NM_193489.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1017

 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 62/70 (88%)
 Strand = Plus / Minus

                                                                       
Query: 406 gaatttatggtggctaatgaattaagcaggacgtccaaaagcaatggatcttgaatacca 465
           ||||||||||| | ||||| ||||||||||| |||||||||||| || || |||||||||
Sbjct: 740 gaatttatggtcgttaatgcattaagcaggatgtccaaaagcaacggttcgtgaatacca 681

                     
Query: 466 atgtccaccc 475
           ||||| ||||
Sbjct: 680 atgtctaccc 671
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>ref|NM_001017214.2| Xenopus tropicalis translocase of outer mitochondrial membrane 7
           homolog (yeast) (tomm7), mRNA
          Length = 455

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 519 caaatgcaactacatcttgaa 539
           |||||||||||||||||||||
Sbjct: 377 caaatgcaactacatcttgaa 397
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>emb|BX119314.13| Zebrafish DNA sequence from clone DKEY-18H19 in linkage group 14,
             complete sequence
          Length = 203157

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 484   tcaataagatcaaagcaaaga 504
             |||||||||||||||||||||
Sbjct: 60509 tcaataagatcaaagcaaaga 60489
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>gb|AC154206.2| Mus musculus BAC clone RP24-104P20 from 14, complete sequence
          Length = 167116

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 249   ctccctgttaccaaaatggta 269
             |||||||||||||||||||||
Sbjct: 13944 ctccctgttaccaaaatggta 13924
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>emb|CR760426.2| Xenopus tropicalis finished cDNA, clone TNeu037g14
          Length = 455

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 519 caaatgcaactacatcttgaa 539
           |||||||||||||||||||||
Sbjct: 377 caaatgcaactacatcttgaa 397
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>gb|AC154239.3| Mus musculus BAC clone RP24-164C12 from chromosome 14, complete sequence
          Length = 161815

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 249    ctccctgttaccaaaatggta 269
              |||||||||||||||||||||
Sbjct: 133718 ctccctgttaccaaaatggta 133698
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>gb|AC170875.2| Mus musculus BAC clone RP24-266D3 from chromosome 3, complete sequence
          Length = 155248

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 459    aataccaatgtccaccctga 478
              ||||||||||||||||||||
Sbjct: 115400 aataccaatgtccaccctga 115381
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>gb|AC161609.6| Mus musculus BAC clone RP23-139D15 from chromosome 14, complete sequence
          Length = 219723

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 342    gctgtcgttccagctctgaaactc 365
              ||||| ||||||||||||||||||
Sbjct: 125834 gctgttgttccagctctgaaactc 125811
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>gb|AC146194.2| Pan troglodytes BAC clone CH251-490J23 from Y, complete sequence
          Length = 182769

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 558    tattttctgtttgaaagatctatc 581
              ||||||||||||||| ||||||||
Sbjct: 139939 tattttctgtttgaatgatctatc 139916
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>gb|AC146183.3| Pan troglodytes BAC clone CH251-548L16 from Y, complete sequence
          Length = 234142

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 558    tattttctgtttgaaagatctatc 581
              ||||||||||||||| ||||||||
Sbjct: 232426 tattttctgtttgaatgatctatc 232449
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>gb|AC138400.12| Mus musculus chromosome 14, clone RP23-260C21, complete sequence
          Length = 213423

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 342   gctgtcgttccagctctgaaactc 365
             ||||| ||||||||||||||||||
Sbjct: 83331 gctgttgttccagctctgaaactc 83354
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>gb|AE014308.1| Homo sapiens chromosome 13q34 schizophrenia region contig 1 section 5
            of 11 of the complete sequence
          Length = 250029

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 554  ataatattttctgtttgaaa 573
            ||||||||||||||||||||
Sbjct: 8524 ataatattttctgtttgaaa 8543
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>gb|AC121865.2| Mus musculus BAC clone RP24-112O1 from 8, complete sequence
          Length = 178620

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 394    cccagatgatccgaatttat 413
              ||||||||||||||||||||
Sbjct: 161077 cccagatgatccgaatttat 161096
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>gb|AC102031.7| Mus musculus chromosome 3, clone RP23-14C8, complete sequence
          Length = 181179

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 459    aataccaatgtccaccctga 478
              ||||||||||||||||||||
Sbjct: 150237 aataccaatgtccaccctga 150256
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>gb|AC146745.20| Medicago truncatula clone mth2-53p19, complete sequence
          Length = 121952

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 182    ttttcaattgcaagatagtg 201
              ||||||||||||||||||||
Sbjct: 110623 ttttcaattgcaagatagtg 110604
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>gb|AC149637.11| Medicago truncatula clone mth2-181h2, complete sequence
          Length = 116616

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 182   ttttcaattgcaagatagtg 201
             ||||||||||||||||||||
Sbjct: 32125 ttttcaattgcaagatagtg 32106
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>emb|Z75741.1|HS107N3 Human DNA sequence from clone RP1-107N3 on chromosome X Contains a
              kinesin heavy chain member 2 (KIF2) pseudogene and a
              Huntingtin interacting protein K (HYPK) pseudogene,
              complete sequence
          Length = 174045

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 559    attttctgtttgaaagatct 578
              ||||||||||||||||||||
Sbjct: 105402 attttctgtttgaaagatct 105383
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>emb|AL365258.24| Human DNA sequence from clone RP11-448G4 on chromosome 1 Contains the
             5' end of a novel gene, a eukaryotic translation
             elongation factor 1 alpha (EEF1A) pseudogene, a novel
             pseudogene, a novel gene and a ribosomal protein L24
             (RPL24) pseudogene, complete sequence
          Length = 129343

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 256   ttaccaaaatggtagctgct 275
             ||||||||||||||||||||
Sbjct: 64705 ttaccaaaatggtagctgct 64724
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>emb|AL390857.7| Human DNA sequence from clone RP11-51N22 on chromosome 13 Contains a
              heterogeneous nuclear ribonucleoprotein A1 (HNRPA1)
              pseudogene and a novel pseudogene (KIAA1935 FLJ31359),
              complete sequence
          Length = 154273

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 559    attttctgtttgaaagatct 578
              ||||||||||||||||||||
Sbjct: 151156 attttctgtttgaaagatct 151175
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>emb|AL355314.10| Human DNA sequence from clone RP11-598C10 on chromosome 10, complete
             sequence
          Length = 73750

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 554   ataatattttctgtttgaaa 573
             ||||||||||||||||||||
Sbjct: 64890 ataatattttctgtttgaaa 64909
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>emb|AL136524.24| Human DNA sequence from clone RP11-78L19 on chromosome 13q14.3-21.2,
              complete sequence
          Length = 181541

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 554    ataatattttctgtttgaaa 573
              ||||||||||||||||||||
Sbjct: 151598 ataatattttctgtttgaaa 151617
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>gb|AC117507.5| Homo sapiens 3 BAC RP11-137K3 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 134182

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 140   cagcatccttcatgcttagc 159
             ||||||||||||||||||||
Sbjct: 68818 cagcatccttcatgcttagc 68837
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>dbj|BS000624.2| Pan troglodytes chromosome Y clone: PTB-002J03, complete sequence
          Length = 119627

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 558   tattttctgtttgaaagatctatc 581
             ||||||||||||||| ||||||||
Sbjct: 89822 tattttctgtttgaatgatctatc 89845
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>dbj|BS000557.1| Pan troglodytes chromosome Y clone:PTB-464M08, complete sequences
          Length = 120612

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 558    tattttctgtttgaaagatctatc 581
              ||||||||||||||| ||||||||
Sbjct: 104072 tattttctgtttgaatgatctatc 104049
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>gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence
          Length = 23952694

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 558      tattttctgtttgaaagatctatc 581
                ||||||||||||||| ||||||||
Sbjct: 18562867 tattttctgtttgaatgatctatc 18562844
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>gb|AC040968.6| Homo sapiens chromosome 11, clone RP11-372B5, complete sequence
          Length = 176988

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 327   ttcttcagtattcaagctgt 346
             ||||||||||||||||||||
Sbjct: 11864 ttcttcagtattcaagctgt 11883
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>gb|AC067902.6| Homo sapiens chromosome 11, clone RP11-72C9, complete sequence
          Length = 189071

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 327   ttcttcagtattcaagctgt 346
             ||||||||||||||||||||
Sbjct: 84765 ttcttcagtattcaagctgt 84746
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>gb|AC158237.2| Mus musculus BAC clone RP23-142I8 from chromosome 9, complete sequence
          Length = 179606

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 554   ataatattttctgtttgaaa 573
             ||||||||||||||||||||
Sbjct: 29784 ataatattttctgtttgaaa 29765
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>gb|AC006376.2|AC006376 Homo sapiens BAC clone RP11-386L3 from Y, complete sequence
          Length = 172007

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 558   tattttctgtttgaaagatctatc 581
             ||||||||||||||| ||||||||
Sbjct: 96883 tattttctgtttgaatgatctatc 96860
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>gb|AC116317.4| Homo sapiens BAC clone RP11-1406H17 from 4, complete sequence
          Length = 160943

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 600  tatttctgactcaagcagcc 619
            ||||||||||||||||||||
Sbjct: 6244 tatttctgactcaagcagcc 6263
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>gb|AC019159.8| Homo sapiens BAC clone RP11-56O18 from 2, complete sequence
          Length = 163085

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 313   acactgtacccagcttcttcagtattca 340
             ||||||||||||| ||||||| ||||||
Sbjct: 72514 acactgtacccagtttcttcattattca 72541
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>gb|AC123788.7| Homo sapiens chromosome 11, clone RP5-1173A5, complete sequence
          Length = 133379

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 546   caagatgcataatattttctgttt 569
             ||||| ||||||||||||||||||
Sbjct: 53663 caagaggcataatattttctgttt 53686
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>emb|AL929225.6| Zebrafish DNA sequence from clone CH211-250A24, complete sequence
          Length = 151067

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 578   tatcttaattgaagggacta 597
             ||||||||||||||||||||
Sbjct: 47788 tatcttaattgaagggacta 47807
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>gb|AC139351.4| Mus musculus BAC clone RP24-156K15 from 8, complete sequence
          Length = 190998

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 394   cccagatgatccgaatttat 413
             ||||||||||||||||||||
Sbjct: 29265 cccagatgatccgaatttat 29284
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>gb|AC000378.1|AC000378 Human Chromosome 11 pac pDJ1173a5, complete sequence
          Length = 132783

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 546   caagatgcataatattttctgttt 569
             ||||| ||||||||||||||||||
Sbjct: 79114 caagaggcataatattttctgttt 79091
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>dbj|AB209664.1| Homo sapiens mRNA for Hypothetical protein DKFZp666D035 variant
           protein
          Length = 11232

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 546 caagatgcataatattttctgttt 569
           ||||| ||||||||||||||||||
Sbjct: 457 caagaggcataatattttctgttt 434
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>emb|Z70042.1|HSU96H11 Human DNA sequence from clone LL0XNC01-96H11 on chromosome X, complete
             sequence
          Length = 38168

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 559   attttctgtttgaaagatct 578
             ||||||||||||||||||||
Sbjct: 23124 attttctgtttgaaagatct 23143


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,298,277
Number of Sequences: 3902068
Number of extensions: 5298277
Number of successful extensions: 95447
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 95309
Number of HSP's gapped (non-prelim): 138
length of query: 633
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 610
effective length of database: 17,143,297,704
effective search space: 10457411599440
effective search space used: 10457411599440
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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