ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal34c08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY293827.1| Triticum aestivum phosphate transporter 2-1 (PT2-... 547 e-152
2ref|XM_466499.1| Oryza sativa (japonica cultivar-group), mRNA 103 6e-19
3ref|XM_466500.1| Oryza sativa (japonica cultivar-group), mRNA 103 6e-19
4dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 103 6e-19
5dbj|AP004079.2| Oryza sativa (japonica cultivar-group) genomic D... 103 6e-19
6dbj|AP005874.3| Oryza sativa (japonica cultivar-group) genomic D... 103 6e-19
7dbj|AK067498.1| Oryza sativa (japonica cultivar-group) cDNA clon... 103 6e-19
8dbj|AK104702.1| Oryza sativa (japonica cultivar-group) cDNA clon... 96 1e-16
9gb|AY613923.1| Marituba virus strain BeAn 15 non-structural prot... 44 0.46
10gb|U12803.1|TVU12803 Trivittatus virus prototype strain S RNA se... 44 0.46
11gb|AC154789.2| Mus musculus BAC clone RP24-479C22 from chromosom... 42 1.8
12gb|CP000127.1| Nitrosococcus oceani ATCC 19707, complete genome 42 1.8
13gb|AC090013.16| Homo sapiens 12 BAC RP11-407P2 (Roswell Park Can... 42 1.8
14emb|BX664623.7| Mouse DNA sequence from clone RP23-200O2 on chro... 42 1.8
15emb|AL844157.5| Mouse DNA sequence from clone RP24-313C24 on chr... 42 1.8
16gb|AC094096.2| Homo sapiens chromosome 5 clone RP11-11P11, compl... 42 1.8
17gb|AC034219.5| Homo sapiens chromosome 5 clone CTD-2028K10, comp... 42 1.8
18dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.8
19dbj|AP005831.5| Oryza sativa (japonica cultivar-group) genomic D... 42 1.8
20dbj|AP004349.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.8
21dbj|D31911.1|PMCMSG102B Pneumocystis carinii genes for MSG102 (c... 42 1.8
22ref|NM_126063.2| Arabidopsis thaliana unknown protein AT5G66650 ... 40 7.1
23gb|CP000153.1| Thiomicrospira denitrificans ATCC 33889, complete... 40 7.1
24gb|AE014843.1| Plasmodium falciparum 3D7 chromosome 11 section 8... 40 7.1
25gb|AF221708.1| Hevea brasiliensis microsatellite M616 sequence 40 7.1
26gb|AF221699.1| Hevea brasiliensis microsatellite M249 sequence 40 7.1
27gb|AC183539.2| Pan troglodytes BAC clone CH251-340H7 from chromo... 40 7.1
28gb|AC116487.14| Mus musculus chromosome 15, clone RP23-428I9, co... 40 7.1
29gb|AY258503.2| Escherichia coli strain EH41 plasmid pO113, compl... 40 7.1
30gb|AC016204.12| Homo sapiens chromosome 15, clone RP11-25C1, com... 40 7.1
31gb|AC124598.5| Mus musculus BAC clone RP23-22P3 from 13, complet... 40 7.1
32ref|XM_757694.1| Theileria parva strain Muguga chromosome 3 hypo... 40 7.1
33gb|AF099917.1| Caenorhabditis elegans cosmid F54D10, complete se... 40 7.1
34emb|AL109931.18|HSDJ719K3 Human DNA sequence from clone RP4-719K... 40 7.1
35gb|AC090459.6| Homo sapiens chromosome 18, clone RP11-125E6, com... 40 7.1
36gb|AY686591.1| Escherichia coli plasmid pSERB1, partial sequence 40 7.1
37gb|AC090337.5| Homo sapiens chromosome 18, clone RP11-674P19, co... 40 7.1
38gb|AC090811.5| Homo sapiens chromosome 8, clone RP11-55J5, compl... 40 7.1
39dbj|AK081066.1| Mus musculus 10 days neonate cerebellum cDNA, RI... 40 7.1
40gb|AC013472.8| Homo sapiens BAC clone RP11-503P10 from 2, comple... 40 7.1
41gb|AC136601.2| Homo sapiens chromosome 5 clone RP11-1259L22, com... 40 7.1
42gb|AC136605.2| Homo sapiens chromosome 5 clone RP11-1380A14, com... 40 7.1
43dbj|AB018119.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 40 7.1
44gb|AC132439.4| Mus musculus BAC clone RP23-234H10 from 6, comple... 40 7.1
45gb|AC109197.9| Mus musculus chromosome 1, clone RP23-309A8, comp... 40 7.1
46emb|AL808117.6| Mouse DNA sequence from clone RP23-240N3 on chro... 40 7.1
47gb|AC011767.12| Homo sapiens chromosome 15, clone RP11-26F2, com... 40 7.1
48gb|AC093290.4| Homo sapiens chromosome 5 clone RP11-47L17, compl... 40 7.1 
>gb|AY293827.1| Triticum aestivum phosphate transporter 2-1 (PT2-1) mRNA, complete
            cds; plastid gene for plastid product
          Length = 2094

 Score =  547 bits (276), Expect = e-152
 Identities = 417/461 (90%), Gaps = 6/461 (1%)
 Strand = Plus / Minus

                                                                        
Query: 69   agaagttgcaatattccaccttccggtagaaaacataaagatataatcatataggtggca 128
            |||| ||| |||||||| ||||||||||||||| |||||||||   |||||||||||| |
Sbjct: 2093 agaaattgaaatattcc-ccttccggtagaaaatataaagatag--tcatataggtggta 2037

                                                                        
Query: 129  tattagagataaaagatgaagaagctgggagtctcaaacatgattgtttaccgtaaaccc 188
             |||||||||||||||||||||||||||||||||||||||||||| |||||| |||| ||
Sbjct: 2036 cattagagataaaagatgaagaagctgggagtctcaaacatgattatttaccataaatcc 1977

                                                                        
Query: 189  tttatcctaatc-tgtgttttgttgccaggaaaatgattatttgctctgacaaatctttt 247
            |||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1976 tttatcctaatcatgtgctttgttgccaggaaaatgattatttgctctgacaaatctttt 1917

                                                                        
Query: 248  caatttctctgttggaaactccttgagctgactcatctattcactgttacacnnnnnnnn 307
            ||||| | ||| ||||||||||  || ||| |||||||||||||||||||||        
Sbjct: 1916 caattccactgctggaaactcccggaactggctcatctattcactgttacacattttttt 1857

                                                                        
Query: 308  acagcataaattttttagggacaatggctggacctctcaaaacagagattgtatctcaca 367
            ||||||||||   ||||||| ||| ||||||||||||||||||||  | ||| |||||||
Sbjct: 1856 acagcataaaaaatttaggggcaacggctggacctctcaaaacagcaactgtttctcaca 1797

                                                                        
Query: 368  aagcactcacataaagtatttcangaatcttggtcaagattaatgtatagacgactgata 427
            ||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||
Sbjct: 1796 aagcactcacataaagtatttca-gaatcttggtcaagattaatgtatagaagactgata 1738

                                                                        
Query: 428  gcaaagcaccaactggaattgtgaccacccaagagaccacaatttcacgcacagtctctg 487
            ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 1737 gcaaagcaccaactggaattgtgaccacccaggagaccacaatttcacgcacagtctctg 1678

                                                     
Query: 488  ctctgacttctgttnagacctnttgcaaatcccacacccat 528
            ||||||| |||||| |||||| |||||||||||||||||||
Sbjct: 1677 ctctgac-tctgttgagacctcttgcaaatcccacacccat 1638
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>ref|XM_466499.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2158

 Score =  103 bits (52), Expect = 6e-19
 Identities = 133/158 (84%), Gaps = 2/158 (1%)
 Strand = Plus / Minus

                                                                        
Query: 371  cactcacataaagtatttcangaatcttggtcaagattaatgtatagacgactgatagca 430
            ||||||||||||||||  || ||||||| || ||||  ||||| |||| ||  |||| ||
Sbjct: 1829 cactcacataaagtatgcca-gaatctttgtgaagagcaatgtgtagaagatagataaca 1771

                                                                        
Query: 431  aagcaccaactggaattgtgaccacccaagagaccacaatttcacgcacagtctctgctc 490
             ||||||||||||||||||||| | ||| ||| |||||||||||||||| ||||||||||
Sbjct: 1770 cagcaccaactggaattgtgactaaccaggaggccacaatttcacgcactgtctctgctc 1711

                                                  
Query: 491  tgacttctgttnagacctnttgcaaatcccacacccat 528
            ||||  || || || ||| ||||||||||||| |||||
Sbjct: 1710 tgac-cctattgagccctcttgcaaatcccactcccat 1674



 Score = 40.1 bits (20), Expect = 7.1
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                                
Query: 201  tgtgttttgttgccaggaaaatgattatttgctctg 236
            |||||||||||||||   |||||||||||| |||||
Sbjct: 1989 tgtgttttgttgccaaagaaatgattatttactctg 1954
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>ref|XM_466500.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1929

 Score =  103 bits (52), Expect = 6e-19
 Identities = 133/158 (84%), Gaps = 2/158 (1%)
 Strand = Plus / Minus

                                                                        
Query: 371  cactcacataaagtatttcangaatcttggtcaagattaatgtatagacgactgatagca 430
            ||||||||||||||||  || ||||||| || ||||  ||||| |||| ||  |||| ||
Sbjct: 1595 cactcacataaagtatgcca-gaatctttgtgaagagcaatgtgtagaagatagataaca 1537

                                                                        
Query: 431  aagcaccaactggaattgtgaccacccaagagaccacaatttcacgcacagtctctgctc 490
             ||||||||||||||||||||| | ||| ||| |||||||||||||||| ||||||||||
Sbjct: 1536 cagcaccaactggaattgtgactaaccaggaggccacaatttcacgcactgtctctgctc 1477

                                                  
Query: 491  tgacttctgttnagacctnttgcaaatcccacacccat 528
            ||||  || || || ||| ||||||||||||| |||||
Sbjct: 1476 tgac-cctattgagccctcttgcaaatcccactcccat 1440



 Score = 40.1 bits (20), Expect = 7.1
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                                
Query: 201  tgtgttttgttgccaggaaaatgattatttgctctg 236
            |||||||||||||||   |||||||||||| |||||
Sbjct: 1755 tgtgttttgttgccaaagaaatgattatttactctg 1720
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score =  103 bits (52), Expect = 6e-19
 Identities = 133/158 (84%), Gaps = 2/158 (1%)
 Strand = Plus / Minus

                                                                            
Query: 371      cactcacataaagtatttcangaatcttggtcaagattaatgtatagacgactgatagca 430
                ||||||||||||||||  || ||||||| || ||||  ||||| |||| ||  |||| ||
Sbjct: 22994240 cactcacataaagtatgcca-gaatctttgtgaagagcaatgtgtagaagatagataaca 22994182

                                                                            
Query: 431      aagcaccaactggaattgtgaccacccaagagaccacaatttcacgcacagtctctgctc 490
                 ||||||||||||||||||||| | ||| ||| |||||||||||||||| ||||||||||
Sbjct: 22994181 cagcaccaactggaattgtgactaaccaggaggccacaatttcacgcactgtctctgctc 22994122

                                                      
Query: 491      tgacttctgttnagacctnttgcaaatcccacacccat 528
                ||||  || || || ||| ||||||||||||| |||||
Sbjct: 22994121 tgac-cctattgagccctcttgcaaatcccactcccat 22994085



 Score = 40.1 bits (20), Expect = 7.1
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                                    
Query: 201      tgtgttttgttgccaggaaaatgattatttgctctg 236
                |||||||||||||||   |||||||||||| |||||
Sbjct: 22994400 tgtgttttgttgccaaagaaatgattatttactctg 22994365
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>dbj|AP004079.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1067_B01
          Length = 100525

 Score =  103 bits (52), Expect = 6e-19
 Identities = 133/158 (84%), Gaps = 2/158 (1%)
 Strand = Plus / Minus

                                                                         
Query: 371   cactcacataaagtatttcangaatcttggtcaagattaatgtatagacgactgatagca 430
             ||||||||||||||||  || ||||||| || ||||  ||||| |||| ||  |||| ||
Sbjct: 18637 cactcacataaagtatgcca-gaatctttgtgaagagcaatgtgtagaagatagataaca 18579

                                                                         
Query: 431   aagcaccaactggaattgtgaccacccaagagaccacaatttcacgcacagtctctgctc 490
              ||||||||||||||||||||| | ||| ||| |||||||||||||||| ||||||||||
Sbjct: 18578 cagcaccaactggaattgtgactaaccaggaggccacaatttcacgcactgtctctgctc 18519

                                                   
Query: 491   tgacttctgttnagacctnttgcaaatcccacacccat 528
             ||||  || || || ||| ||||||||||||| |||||
Sbjct: 18518 tgac-cctattgagccctcttgcaaatcccactcccat 18482



 Score = 40.1 bits (20), Expect = 7.1
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                                 
Query: 201   tgtgttttgttgccaggaaaatgattatttgctctg 236
             |||||||||||||||   |||||||||||| |||||
Sbjct: 18797 tgtgttttgttgccaaagaaatgattatttactctg 18762
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>dbj|AP005874.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OSJNBa0016G10
          Length = 143211

 Score =  103 bits (52), Expect = 6e-19
 Identities = 133/158 (84%), Gaps = 2/158 (1%)
 Strand = Plus / Minus

                                                                          
Query: 371    cactcacataaagtatttcangaatcttggtcaagattaatgtatagacgactgatagca 430
              ||||||||||||||||  || ||||||| || ||||  ||||| |||| ||  |||| ||
Sbjct: 114042 cactcacataaagtatgcca-gaatctttgtgaagagcaatgtgtagaagatagataaca 113984

                                                                          
Query: 431    aagcaccaactggaattgtgaccacccaagagaccacaatttcacgcacagtctctgctc 490
               ||||||||||||||||||||| | ||| ||| |||||||||||||||| ||||||||||
Sbjct: 113983 cagcaccaactggaattgtgactaaccaggaggccacaatttcacgcactgtctctgctc 113924

                                                    
Query: 491    tgacttctgttnagacctnttgcaaatcccacacccat 528
              ||||  || || || ||| ||||||||||||| |||||
Sbjct: 113923 tgac-cctattgagccctcttgcaaatcccactcccat 113887



 Score = 40.1 bits (20), Expect = 7.1
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                                  
Query: 201    tgtgttttgttgccaggaaaatgattatttgctctg 236
              |||||||||||||||   |||||||||||| |||||
Sbjct: 114202 tgtgttttgttgccaaagaaatgattatttactctg 114167
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>dbj|AK067498.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013111N12, full
            insert sequence
          Length = 2159

 Score =  103 bits (52), Expect = 6e-19
 Identities = 133/158 (84%), Gaps = 2/158 (1%)
 Strand = Plus / Minus

                                                                        
Query: 371  cactcacataaagtatttcangaatcttggtcaagattaatgtatagacgactgatagca 430
            ||||||||||||||||  || ||||||| || ||||  ||||| |||| ||  |||| ||
Sbjct: 1829 cactcacataaagtatgcca-gaatctttgtgaagagcaatgtgtagaagatagataaca 1771

                                                                        
Query: 431  aagcaccaactggaattgtgaccacccaagagaccacaatttcacgcacagtctctgctc 490
             ||||||||||||||||||||| | ||| ||| |||||||||||||||| ||||||||||
Sbjct: 1770 cagcaccaactggaattgtgactaaccaggaggccacaatttcacgcactgtctctgctc 1711

                                                  
Query: 491  tgacttctgttnagacctnttgcaaatcccacacccat 528
            ||||  || || || ||| ||||||||||||| |||||
Sbjct: 1710 tgac-cctattgagccctcttgcaaatcccactcccat 1674



 Score = 40.1 bits (20), Expect = 7.1
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                                
Query: 201  tgtgttttgttgccaggaaaatgattatttgctctg 236
            |||||||||||||||   |||||||||||| |||||
Sbjct: 1990 tgtgttttgttgccaaagaaatgattatttactctg 1955
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>dbj|AK104702.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-037-C11, full
            insert sequence
          Length = 1929

 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 132/158 (83%), Gaps = 2/158 (1%)
 Strand = Plus / Minus

                                                                        
Query: 371  cactcacataaagtatttcangaatcttggtcaagattaatgtatagacgactgatagca 430
            ||||||||||||||||  || ||| ||| || ||||  ||||| |||| ||  |||| ||
Sbjct: 1595 cactcacataaagtatgcca-gaacctttgtgaagagcaatgtgtagaagatagataaca 1537

                                                                        
Query: 431  aagcaccaactggaattgtgaccacccaagagaccacaatttcacgcacagtctctgctc 490
             ||||||||||||||||||||| | ||| ||| |||||||||||||||| ||||||||||
Sbjct: 1536 cagcaccaactggaattgtgactaaccaggaggccacaatttcacgcactgtctctgctc 1477

                                                  
Query: 491  tgacttctgttnagacctnttgcaaatcccacacccat 528
            ||||  || || || ||| ||||||||||||| |||||
Sbjct: 1476 tgac-cctattgagccctcttgcaaatcccactcccat 1440



 Score = 40.1 bits (20), Expect = 7.1
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                                
Query: 201  tgtgttttgttgccaggaaaatgattatttgctctg 236
            |||||||||||||||   |||||||||||| |||||
Sbjct: 1755 tgtgttttgttgccaaagaaatgattatttactctg 1720
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>gb|AY613923.1| Marituba virus strain BeAn 15 non-structural protein gene, partial
           cds
          Length = 247

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 208 tgttgccaggaaaatgattatt 229
           ||||||||||||||||||||||
Sbjct: 241 tgttgccaggaaaatgattatt 220
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>gb|U12803.1|TVU12803 Trivittatus virus prototype strain S RNA segment, N and NSs protein
           genes, complete cds
          Length = 973

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 208 tgttgccaggaaaatgattatt 229
           ||||||||||||||||||||||
Sbjct: 313 tgttgccaggaaaatgattatt 292
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>gb|AC154789.2| Mus musculus BAC clone RP24-479C22 from chromosome 17, complete
             sequence
          Length = 163182

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 131   ttagagataaaagatgaagaa 151
             |||||||||||||||||||||
Sbjct: 69669 ttagagataaaagatgaagaa 69689
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>gb|CP000127.1| Nitrosococcus oceani ATCC 19707, complete genome
          Length = 3481691

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 164     aaacatgattgtttaccgtaa 184
               |||||||||||||||||||||
Sbjct: 2079481 aaacatgattgtttaccgtaa 2079501
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>gb|AC090013.16| Homo sapiens 12 BAC RP11-407P2 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 85446

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 142   agatgaagaagctgggagtctcaaa 166
             |||||||||||||||||| ||||||
Sbjct: 81659 agatgaagaagctgggagcctcaaa 81635
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>emb|BX664623.7| Mouse DNA sequence from clone RP23-200O2 on chromosome 4, complete
            sequence
          Length = 9654

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 131  ttagagataaaagatgaagaa 151
            |||||||||||||||||||||
Sbjct: 7706 ttagagataaaagatgaagaa 7726
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>emb|AL844157.5| Mouse DNA sequence from clone RP24-313C24 on chromosome 4 Contains
           a novel peudogene and a CpG island, complete sequence
          Length = 156075

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 131 ttagagataaaagatgaagaa 151
           |||||||||||||||||||||
Sbjct: 52  ttagagataaaagatgaagaa 72
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>gb|AC094096.2| Homo sapiens chromosome 5 clone RP11-11P11, complete sequence
          Length = 156194

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 397   ttggtcaagattaatgtatag 417
             |||||||||||||||||||||
Sbjct: 30589 ttggtcaagattaatgtatag 30569
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>gb|AC034219.5| Homo sapiens chromosome 5 clone CTD-2028K10, complete sequence
          Length = 120324

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 397    ttggtcaagattaatgtatag 417
              |||||||||||||||||||||
Sbjct: 110403 ttggtcaagattaatgtatag 110383
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 271      tgagctgactcatctattcac 291
                |||||||||||||||||||||
Sbjct: 13421056 tgagctgactcatctattcac 13421076
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>dbj|AP005831.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7,
           BAC clone:B1123E10
          Length = 134641

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 271 tgagctgactcatctattcac 291
           |||||||||||||||||||||
Sbjct: 739 tgagctgactcatctattcac 759
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>dbj|AP004349.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0684A03
          Length = 64705

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 271   tgagctgactcatctattcac 291
             |||||||||||||||||||||
Sbjct: 46815 tgagctgactcatctattcac 46835
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>dbj|D31911.1|PMCMSG102B Pneumocystis carinii genes for MSG102 (complete cds) and MSG104
            (partial cds)
          Length = 5701

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 132  tagagataaaagatgaagaag 152
            |||||||||||||||||||||
Sbjct: 5223 tagagataaaagatgaagaag 5243
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>ref|NM_126063.2| Arabidopsis thaliana unknown protein AT5G66650 mRNA, complete cds
          Length = 1286

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 406  attaatgtatagacgactga 425
            ||||||||||||||||||||
Sbjct: 1128 attaatgtatagacgactga 1147
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>gb|CP000153.1| Thiomicrospira denitrificans ATCC 33889, complete genome
          Length = 2201561

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 132    tagagataaaagatgaagaagctg 155
              |||| |||||||||||||||||||
Sbjct: 798607 tagatataaaagatgaagaagctg 798584
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>gb|AE014843.1| Plasmodium falciparum 3D7 chromosome 11 section 8 of 8 of the complete
             sequence
          Length = 271546

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 98    aaaacataaagatataatcatata 121
             ||||||||||||||||| ||||||
Sbjct: 96430 aaaacataaagatataaacatata 96407
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>gb|AF221708.1| Hevea brasiliensis microsatellite M616 sequence
          Length = 715

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 77/96 (80%)
 Strand = Plus / Minus

                                                                       
Query: 396 cttggtcaagattaatgtatagacgactgatagcaaagcaccaactggaattgtgaccac 455
           ||||||||||||  |||||||| | ||||| | |  ||||||| |||||||||| || | 
Sbjct: 209 cttggtcaagatccatgtataggcaactgagaacccagcaccagctggaattgtcacaag 150

                                               
Query: 456 ccaagagaccacaatttcacgcacagtctctgctct 491
           ||| ||  ||||||| || | ||||||| |||||||
Sbjct: 149 ccatgaagccacaatctctctcacagtccctgctct 114
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>gb|AF221699.1| Hevea brasiliensis microsatellite M249 sequence
          Length = 708

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 77/96 (80%)
 Strand = Plus / Minus

                                                                       
Query: 396 cttggtcaagattaatgtatagacgactgatagcaaagcaccaactggaattgtgaccac 455
           ||||||||||||  |||||||| | ||||| | |  ||||||| |||||||||| || | 
Sbjct: 209 cttggtcaagatccatgtataggcaactgagaacccagcaccagctggaattgtcacaag 150

                                               
Query: 456 ccaagagaccacaatttcacgcacagtctctgctct 491
           ||| ||  ||||||| || | ||||||| |||||||
Sbjct: 149 ccatgaagccacaatctctctcacagtccctgctct 114
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>gb|AC183539.2| Pan troglodytes BAC clone CH251-340H7 from chromosome 15, complete
             sequence
          Length = 155024

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 40    atgtatgataaagtaatcat 59
             ||||||||||||||||||||
Sbjct: 22034 atgtatgataaagtaatcat 22015
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>gb|AC116487.14| Mus musculus chromosome 15, clone RP23-428I9, complete sequence
          Length = 174945

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 232   ctctgacaaatcttttcaat 251
             ||||||||||||||||||||
Sbjct: 64971 ctctgacaaatcttttcaat 64952
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>gb|AY258503.2| Escherichia coli strain EH41 plasmid pO113, complete sequence
          Length = 165548

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 95    tagaaaacataaagatataatcat 118
             ||||||||||||||||| ||||||
Sbjct: 42229 tagaaaacataaagataaaatcat 42252
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>gb|AC016204.12| Homo sapiens chromosome 15, clone RP11-25C1, complete sequence
          Length = 141447

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 40    atgtatgataaagtaatcat 59
             ||||||||||||||||||||
Sbjct: 86200 atgtatgataaagtaatcat 86181
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>gb|AC124598.5| Mus musculus BAC clone RP23-22P3 from 13, complete sequence
          Length = 220624

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 203    tgttttgttgccaggaaaatgatt 226
              ||||||||||||| ||||||||||
Sbjct: 121600 tgttttgttgccatgaaaatgatt 121623
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>ref|XM_757694.1| Theileria parva strain Muguga chromosome 3 hypothetical protein
            (TP03_0663) partial mRNA
          Length = 4716

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                   
Query: 504  gacctnttgcaaatcccacaccc 526
            ||||| |||||||||||||||||
Sbjct: 2371 gacctcttgcaaatcccacaccc 2349
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>gb|AF099917.1| Caenorhabditis elegans cosmid F54D10, complete sequence
          Length = 32563

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 237   acaaatcttttcaatttctc 256
             ||||||||||||||||||||
Sbjct: 25512 acaaatcttttcaatttctc 25531
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>emb|AL109931.18|HSDJ719K3 Human DNA sequence from clone RP4-719K3 on chromosome Xq21.1-21.31,
           complete sequence
          Length = 81851

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 438 aactggaattgtgaccacccaaga 461
           |||||||||||| |||||||||||
Sbjct: 986 aactggaattgtaaccacccaaga 963
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>gb|AC090459.6| Homo sapiens chromosome 18, clone RP11-125E6, complete sequence
          Length = 146310

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 130   attagagataaaagatgaag 149
             ||||||||||||||||||||
Sbjct: 35838 attagagataaaagatgaag 35819
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>gb|AY686591.1| Escherichia coli plasmid pSERB1, partial sequence
          Length = 67034

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 95    tagaaaacataaagatataatcat 118
             ||||||||||||||||| ||||||
Sbjct: 48384 tagaaaacataaagataaaatcat 48407
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>gb|AC090337.5| Homo sapiens chromosome 18, clone RP11-674P19, complete sequence
          Length = 183876

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 237    acaaatcttttcaatttctctgtt 260
              ||||| ||||||||||||||||||
Sbjct: 106237 acaaaccttttcaatttctctgtt 106214
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>gb|AC090811.5| Homo sapiens chromosome 8, clone RP11-55J5, complete sequence
          Length = 176418

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 54    aatcatatctctacaagaag 73
             ||||||||||||||||||||
Sbjct: 88270 aatcatatctctacaagaag 88289
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>dbj|AK081066.1| Mus musculus 10 days neonate cerebellum cDNA, RIKEN full-length
            enriched library, clone:B930078I05
            product:unclassifiable, full insert sequence
          Length = 2967

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 147  aagaagctgggagtctcaaa 166
            ||||||||||||||||||||
Sbjct: 1127 aagaagctgggagtctcaaa 1146
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>gb|AC013472.8| Homo sapiens BAC clone RP11-503P10 from 2, complete sequence
          Length = 149481

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 236    gacaaatcttttcaatttct 255
              ||||||||||||||||||||
Sbjct: 106761 gacaaatcttttcaatttct 106780
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>gb|AC136601.2| Homo sapiens chromosome 5 clone RP11-1259L22, complete sequence
          Length = 186323

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 473   cacgcacagtctctgctctg 492
             ||||||||||||||||||||
Sbjct: 40037 cacgcacagtctctgctctg 40056
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>gb|AC136605.2| Homo sapiens chromosome 5 clone RP11-1380A14, complete sequence
          Length = 171395

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 473   cacgcacagtctctgctctg 492
             ||||||||||||||||||||
Sbjct: 52470 cacgcacagtctctgctctg 52489
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>dbj|AB018119.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MSN2
          Length = 62927

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 406  attaatgtatagacgactga 425
            ||||||||||||||||||||
Sbjct: 8566 attaatgtatagacgactga 8547
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>gb|AC132439.4| Mus musculus BAC clone RP23-234H10 from 6, complete sequence
          Length = 190308

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 188   ctttatcctaatctgtgttttgtt 211
             ||||||||||||||||||| ||||
Sbjct: 75186 ctttatcctaatctgtgttgtgtt 75209
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>gb|AC109197.9| Mus musculus chromosome 1, clone RP23-309A8, complete sequence
          Length = 255342

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 137    ataaaagatgaagaagctgg 156
              ||||||||||||||||||||
Sbjct: 196423 ataaaagatgaagaagctgg 196442
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>emb|AL808117.6| Mouse DNA sequence from clone RP23-240N3 on chromosome 2, complete
              sequence
          Length = 245266

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 147    aagaagctgggagtctcaaa 166
              ||||||||||||||||||||
Sbjct: 240885 aagaagctgggagtctcaaa 240866
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>gb|AC011767.12| Homo sapiens chromosome 15, clone RP11-26F2, complete sequence
          Length = 180233

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 40    atgtatgataaagtaatcat 59
             ||||||||||||||||||||
Sbjct: 85166 atgtatgataaagtaatcat 85147
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>gb|AC093290.4| Homo sapiens chromosome 5 clone RP11-47L17, complete sequence
          Length = 179443

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 473   cacgcacagtctctgctctg 492
             ||||||||||||||||||||
Sbjct: 96776 cacgcacagtctctgctctg 96757


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,428,220
Number of Sequences: 3902068
Number of extensions: 5428220
Number of successful extensions: 118845
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 118615
Number of HSP's gapped (non-prelim): 212
length of query: 528
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 505
effective length of database: 17,143,297,704
effective search space: 8657365340520
effective search space used: 8657365340520
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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