Clone Information

BLAST Search Result

Clone Name	rbaal33n07
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	dbj\|AK120689.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	412	e-112
2	dbj\|AP008215.1\| Oryza sativa (japonica cultivar-group) genomic D...	159	1e-35
3	dbj\|AP005572.3\| Oryza sativa (japonica cultivar-group) genomic D...	159	1e-35
4	gb\|AY740529.1\| Nicotiana tabacum isochorismate synthase protein ...	76	2e-10
5	gb\|AC150777.2\| Medicago truncatula chromosome 7 BAC clone mte1-5...	72	3e-09
6	gb\|AY743431.1\| Capsicum annuum isochorismate synthase (ICS1) mRN...	70	1e-08
7	gb\|AC146562.17\| Medicago truncatula clone mth2-14d10, complete s...	66	2e-07
8	gb\|AC068064.4\| Mus musculus strain C57BL6/J chromosome 6 clone R...	46	0.14
9	emb\|AL034548.25\|HS1103G7 Human DNA sequence from clone RP5-1103G...	44	0.57
10	emb\|X59278.1\|SPPOL3 S. pombe POL3 gene for catalytic subunit DNA...	44	0.57
11	emb\|AL121815.1\|SPBC336 S.pombe chromosome II cosmid c336	44	0.57
12	ref\|NM_001022042.1\| Schizosaccharomyces pombe 972h- hypothetical...	44	0.57
13	gb\|L07734.1\|YSPDNAPOLD Schizosaccharomyces pombe DNA polymerase ...	44	0.57
14	dbj\|AB027796.1\| Schizosaccharomyces pombe gene for DNA polymeras...	44	0.57
15	gb\|AC154386.2\| Mus musculus BAC clone RP23-27A13 from 13, comple...	42	2.2
16	emb\|AL391703.9\| Human DNA sequence from clone RP11-422P8 on chro...	42	2.2
17	emb\|AL136087.12\| Human DNA sequence from clone RP1-137F1 on chro...	42	2.2
18	emb\|CT030714.5\| Mouse DNA sequence from clone RP23-223P19 on chr...	42	2.2
19	emb\|BX000438.7\| Zebrafish DNA sequence from clone CH211-209M20 i...	42	2.2
20	gb\|AC154662.2\| Mus musculus BAC clone RP24-279F20 from chromosom...	42	2.2
21	gb\|AC163280.2\| Mus musculus BAC clone RP23-478G5 from chromosome...	40	8.9
22	gb\|AC154276.2\| Mus musculus BAC clone RP24-260F19 from chromosom...	40	8.9
23	gb\|AC122287.4\| Mus musculus BAC clone RP23-253A15 from 1, comple...	40	8.9
24	ref\|XM_644357.1\| Entamoeba histolytica HM-1:IMSS conserved hypot...	40	8.9
25	gb\|AC079888.10\| Oryza sativa chromosome 10 BAC OSJNBa0078O01 gen...	40	8.9
26	ref\|XM_672074.1\| Plasmodium berghei strain ANKA hypothetical pro...	40	8.9
27	emb\|AL137244.28\| Human DNA sequence from clone RP11-173B14 on ch...	40	8.9
28	emb\|AL049651.2\|HSJ753D10 Human DNA sequence from clone RP4-753D1...	40	8.9
29	gb\|AC161508.4\| Mus musculus chromosome 1, clone RP23-95L22, comp...	40	8.9
30	emb\|AL023586.1\|HS426F10 Human DNA sequence from clone RP3-426F10...	40	8.9
31	emb\|BX927156.1\| Corynebacterium glutamicum ATCC 13032, IS finger...	40	8.9
32	emb\|BX927155.1\| Corynebacterium glutamicum ATCC 13032, IS finger...	40	8.9
33	emb\|BX927148.1\| Corynebacterium glutamicum ATCC 13032, IS finger...	40	8.9
34	emb\|CR387929.4\| Zebrafish DNA sequence from clone DKEY-172H18 in...	40	8.9
35	gb\|CP000240.1\| Synechococcus sp. JA-2-3B'a(2-13), complete genome	40	8.9
36	gb\|AC035139.11\| Homo sapiens chromosome 10 clone RP11-563N6, com...	40	8.9
37	gb\|AC011193.3\| Homo sapiens chromosome 17, clone RP11-521P1, com...	40	8.9
38	gb\|AC060234.11\| Homo sapiens chromosome 10 clone RP11-523O18, co...	40	8.9
39	gb\|AC069549.5\| Homo sapiens chromosome 10 clone RP11-575A19, com...	40	8.9
40	gb\|AC104161.2\| Homo sapiens chromosome 3 clone RP11-32J15, compl...	40	8.9
41	emb\|BX511101.3\| Zebrafish DNA sequence from clone DKEYP-92F1 in ...	40	8.9
42	gb\|AF314192.1\|AF314192 Corynebacterium glutamicum rrnE operon, c...	40	8.9
43	gb\|AC012336.9\|AC012336 Homo sapiens chromosome 17, clone CTD-223...	40	8.9
44	dbj\|AP008216.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	8.9
45	dbj\|BA000036.3\| Corynebacterium glutamicum ATCC 13032 DNA, compl...	40	8.9
46	gb\|AC007661.2\|AC007661 Arabidopsis thaliana chromosome II sectio...	40	8.9
47	emb\|CR931778.23\| Zebrafish DNA sequence from clone DKEY-265O4 in...	40	8.9
48	emb\|BX908751.8\| Zebrafish DNA sequence from clone DKEY-223N17 in...	40	8.9
49	emb\|AL954147.12\| Zebrafish DNA sequence from clone CH211-117H23 ...	40	8.9
50	gb\|AE016959.3\| Oryza sativa (japonica cultivar-group) chromosome...	40	8.9
51	emb\|AL627212.21\| Mouse DNA sequence from clone RP23-145E1 on chr...	40	8.9
52	emb\|AL929535.6\| Zebrafish DNA sequence from clone CH211-151O1, c...	40	8.9
53	emb\|AL365322.10\| Mouse DNA sequence from clone RP23-282D4 on chr...	40	8.9

>dbj|AK120689.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013169E21, full
            insert sequence
          Length = 2172

 Score =  412 bits (208), Expect = e-112
 Identities = 307/340 (90%)
 Strand = Plus / Minus

                                                                        
Query: 311  tagttacagttcaaatcaatgtccccatgtttcctgcctcttggtagaaaatatgatgtt 370
            |||||||| ||||||||| ||| ||||| ||| | ||||||||  || ||||||| ||||
Sbjct: 1837 tagttacaattcaaatcactgttcccatattttcagcctcttgcaagcaaatatgttgtt 1778

                                                                        
Query: 371  cttgatacttcaacaactttgcaaactgagatgctttgagatcaagctcatcccattcaa 430
            ||||||||| ||  |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 1777 cttgatactgcagtaactttgcaaactgagatgctttgaggtcaagctcatcccattcaa 1718

                                                                        
Query: 431  aagatggatttgtaccttcgacaatcccggcaccggcataaactaaagtgctatatcctt 490
            | ||||||||||||||||| ||||| |||||||| |||||||||||||||||||  ||||
Sbjct: 1717 aggatggatttgtaccttcaacaattccggcaccagcataaactaaagtgctatgacctt 1658

                                                                        
Query: 491  ttccaagtagtgctgatctaatcccaacagcaaactcactttcagccccaccaaaccaac 550
            |||| |||||||||||||||||||||||||| |||||||||||||| || ||||||||||
Sbjct: 1657 ttcctagtagtgctgatctaatcccaacagcgaactcactttcagctcctccaaaccaac 1598

                                                                        
Query: 551  caacaggtccagcatacattccacggtcgaaaatttcataatctcgtatgaattggcgcg 610
            |||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| |
Sbjct: 1597 caacaggtccagcatacattccacggtcaaaaatttcataatcttgtatgaattggcgtg 1538

                                                    
Query: 611  cttctttagtgggcaagccacaaacagctgggcttggatg 650
            | |||| ||||||||  |||||||| |||||||| |||||
Sbjct: 1537 cctcttcagtgggcagaccacaaacggctgggctcggatg 1498

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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score =  159 bits (80), Expect = 1e-35
 Identities = 95/100 (95%)
 Strand = Plus / Minus

                                                                            
Query: 488      cttttccaagtagtgctgatctaatcccaacagcaaactcactttcagccccaccaaacc 547
                ||||||| |||||||||||||||||||||||||| |||||||||||||| || |||||||
Sbjct: 11760502 cttttcctagtagtgctgatctaatcccaacagcgaactcactttcagctcctccaaacc 11760443

                                                        
Query: 548      aaccaacaggtccagcatacattccacggtcgaaaatttc 587
                ||||||||||||||||||||||||||||||| ||||||||
Sbjct: 11760442 aaccaacaggtccagcatacattccacggtcaaaaatttc 11760403



 Score =  137 bits (69), Expect = 5e-29
 Identities = 84/89 (94%)
 Strand = Plus / Minus

                                                                            
Query: 396      ctgagatgctttgagatcaagctcatcccattcaaaagatggatttgtaccttcgacaat 455
                ||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |||||
Sbjct: 11760720 ctgagatgctttgaggtcaagctcatcccattcaaaggatggatttgtaccttcaacaat 11760661

                                             
Query: 456      cccggcaccggcataaactaaagtgctat 484
                 |||||||| |||||||||||||||||||
Sbjct: 11760660 tccggcaccagcataaactaaagtgctat 11760632



 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 86/100 (86%)
 Strand = Plus / Minus

                                                                            
Query: 300      tgatgacttattagttacagttcaaatcaatgtccccatgtttcctgcctcttggtagaa 359
                |||||||||| |||||||| ||||||||| ||| ||||| ||| | ||||||||  || |
Sbjct: 11760901 tgatgacttactagttacaattcaaatcactgttcccatattttcagcctcttgcaagca 11760842

                                                        
Query: 360      aatatgatgttcttgatacttcaacaactttgcaaactga 399
                |||||| ||||||||||||| ||  |||||||||||||||
Sbjct: 11760841 aatatgttgttcttgatactgcagtaactttgcaaactga 11760802



 Score = 71.9 bits (36), Expect = 3e-09
 Identities = 45/48 (93%)
 Strand = Plus / Minus

                                                                
Query: 488      cttttccaagtagtgctgatctaatcccaacagcaaactcactttcag 535
                |||||||||  |||||||| ||||||||||||||||||||||||||||
Sbjct: 11763772 cttttccaacaagtgctgacctaatcccaacagcaaactcactttcag 11763725



 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 56/64 (87%)
 Strand = Plus / Minus

                                                                            
Query: 587      cataatctcgtatgaattggcgcgcttctttagtgggcaagccacaaacagctgggcttg 646
                |||||||| ||||||||||||| || |||| ||||||||  |||||||| |||||||| |
Sbjct: 11760267 cataatcttgtatgaattggcgtgcctcttcagtgggcagaccacaaacggctgggctcg 11760208

                    
Query: 647      gatg 650
                ||||
Sbjct: 11760207 gatg 11760204

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>dbj|AP005572.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
            clone:OJ1506_A04
          Length = 114998

 Score =  159 bits (80), Expect = 1e-35
 Identities = 95/100 (95%)
 Strand = Plus / Minus

                                                                        
Query: 488  cttttccaagtagtgctgatctaatcccaacagcaaactcactttcagccccaccaaacc 547
            ||||||| |||||||||||||||||||||||||| |||||||||||||| || |||||||
Sbjct: 3320 cttttcctagtagtgctgatctaatcccaacagcgaactcactttcagctcctccaaacc 3261

                                                    
Query: 548  aaccaacaggtccagcatacattccacggtcgaaaatttc 587
            ||||||||||||||||||||||||||||||| ||||||||
Sbjct: 3260 aaccaacaggtccagcatacattccacggtcaaaaatttc 3221



 Score =  137 bits (69), Expect = 5e-29
 Identities = 84/89 (94%)
 Strand = Plus / Minus

                                                                        
Query: 396  ctgagatgctttgagatcaagctcatcccattcaaaagatggatttgtaccttcgacaat 455
            ||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |||||
Sbjct: 3538 ctgagatgctttgaggtcaagctcatcccattcaaaggatggatttgtaccttcaacaat 3479

                                         
Query: 456  cccggcaccggcataaactaaagtgctat 484
             |||||||| |||||||||||||||||||
Sbjct: 3478 tccggcaccagcataaactaaagtgctat 3450



 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 86/100 (86%)
 Strand = Plus / Minus

                                                                        
Query: 300  tgatgacttattagttacagttcaaatcaatgtccccatgtttcctgcctcttggtagaa 359
            |||||||||| |||||||| ||||||||| ||| ||||| ||| | ||||||||  || |
Sbjct: 3719 tgatgacttactagttacaattcaaatcactgttcccatattttcagcctcttgcaagca 3660

                                                    
Query: 360  aatatgatgttcttgatacttcaacaactttgcaaactga 399
            |||||| ||||||||||||| ||  |||||||||||||||
Sbjct: 3659 aatatgttgttcttgatactgcagtaactttgcaaactga 3620



 Score = 71.9 bits (36), Expect = 3e-09
 Identities = 45/48 (93%)
 Strand = Plus / Minus

                                                            
Query: 488  cttttccaagtagtgctgatctaatcccaacagcaaactcactttcag 535
            |||||||||  |||||||| ||||||||||||||||||||||||||||
Sbjct: 6590 cttttccaacaagtgctgacctaatcccaacagcaaactcactttcag 6543



 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 56/64 (87%)
 Strand = Plus / Minus

                                                                        
Query: 587  cataatctcgtatgaattggcgcgcttctttagtgggcaagccacaaacagctgggcttg 646
            |||||||| ||||||||||||| || |||| ||||||||  |||||||| |||||||| |
Sbjct: 3085 cataatcttgtatgaattggcgtgcctcttcagtgggcagaccacaaacggctgggctcg 3026

                
Query: 647  gatg 650
            ||||
Sbjct: 3025 gatg 3022

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>gb|AY740529.1| Nicotiana tabacum isochorismate synthase protein (ICS1) mRNA,
           partial cds
          Length = 907

 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 65/74 (87%)
 Strand = Plus / Minus

                                                                       
Query: 514 ccaacagcaaactcactttcagccccaccaaaccaaccaacaggtccagcatacattcca 573
           ||||||||||| ||||| ||  |||| ||||||||||||||||| |||||||||||||| 
Sbjct: 857 ccaacagcaaattcactctcttcccctccaaaccaaccaacaggaccagcatacattcct 798

                         
Query: 574 cggtcgaaaatttc 587
           ||||| || |||||
Sbjct: 797 cggtcaaacatttc 784

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>gb|AC150777.2| Medicago truncatula chromosome 7 BAC clone mte1-51d4, complete sequence
          Length = 98197

 Score = 71.9 bits (36), Expect = 3e-09
 Identities = 63/72 (87%)
 Strand = Plus / Plus

                                                                         
Query: 501   tgctgatctaatcccaacagcaaactcactttcagccccaccaaaccaaccaacaggtcc 560
             ||||||||| || ||||| ||||| ||||| ||  | || ||||||||||||||||||||
Sbjct: 25465 tgctgatctgatgccaacggcaaagtcactctctcctcctccaaaccaaccaacaggtcc 25524

                         
Query: 561   agcatacattcc 572
             ||||||||||||
Sbjct: 25525 agcatacattcc 25536

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>gb|AY743431.1| Capsicum annuum isochorismate synthase (ICS1) mRNA, complete cds
          Length = 2094

 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 65/75 (86%)
 Strand = Plus / Minus

                                                                        
Query: 514  ccaacagcaaactcactttcagccccaccaaaccaaccaacaggtccagcatacattcca 573
            ||||||||||| ||||| ||  |||| ||||||||||||||| | |||||||||||||| 
Sbjct: 1568 ccaacagcaaattcactctcttcccctccaaaccaaccaacaagaccagcatacattcct 1509

                           
Query: 574  cggtcgaaaatttca 588
            ||||| || ||||||
Sbjct: 1508 cggtcaaacatttca 1494

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>gb|AC146562.17| Medicago truncatula clone mth2-14d10, complete sequence
          Length = 118505

 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 60/69 (86%)
 Strand = Plus / Plus

                                                                         
Query: 501   tgctgatctaatcccaacagcaaactcactttcagccccaccaaaccaaccaacaggtcc 560
             |||||| || || ||||| ||||||||||| ||  | || ||||||||||||||||||||
Sbjct: 36354 tgctgacctgatgccaacggcaaactcactctctcctcctccaaaccaaccaacaggtcc 36413

                      
Query: 561   agcatacat 569
             |||||||||
Sbjct: 36414 agcatacat 36422

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>gb|AC068064.4| Mus musculus strain C57BL6/J chromosome 6 clone RP23-199I14, complete
             sequence
          Length = 152776

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 378   cttcaacaactttgcaaactgag 400
             |||||||||||||||||||||||
Sbjct: 10339 cttcaacaactttgcaaactgag 10317

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>emb|AL034548.25|HS1103G7 Human DNA sequence from clone RP5-1103G7 on chromosome 20p12.2-13
             Contains the C20orf96 gene, the C20orf99 gene, a novel
             gene, the SOX12 gene for SRY (sex-determining region
             Y)-box 12, the C20orf98 gene for chromosome 20 open
             reading frame 98 (similar to mouse VMP, FLJ23329), the
             C20orf97 gene for a novel kinase domain-containing protein
             similar to phosphoprotein C8FW and rat NIPK, the gene for
             a novel defensin protein (DEFB32, UNQ827, KFLL827) and
             five CpG islands, complete sequence
          Length = 153170

 Score = 44.1 bits (22), Expect = 0.57
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 154   gatatttttgtgattgcatctt 175
             ||||||||||||||||||||||
Sbjct: 19377 gatatttttgtgattgcatctt 19356

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>emb|X59278.1|SPPOL3 S. pombe POL3 gene for catalytic subunit DNA polymerase delta
          Length = 3699

 Score = 44.1 bits (22), Expect = 0.57
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                      
Query: 188  aaatcaggctgaaatcctttcaagtt 213
            ||||||||||||||| ||||||||||
Sbjct: 1191 aaatcaggctgaaatgctttcaagtt 1216

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>emb|AL121815.1|SPBC336 S.pombe chromosome II cosmid c336
          Length = 39512

 Score = 44.1 bits (22), Expect = 0.57
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 188   aaatcaggctgaaatcctttcaagtt 213
             ||||||||||||||| ||||||||||
Sbjct: 12432 aaatcaggctgaaatgctttcaagtt 12457

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>ref|NM_001022042.1| Schizosaccharomyces pombe 972h- hypothetical protein (SPBC336.04),
            partial mRNA
          Length = 3261

 Score = 44.1 bits (22), Expect = 0.57
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                      
Query: 188  aaatcaggctgaaatcctttcaagtt 213
            ||||||||||||||| ||||||||||
Sbjct: 1068 aaatcaggctgaaatgctttcaagtt 1093

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>gb|L07734.1|YSPDNAPOLD Schizosaccharomyces pombe DNA polymerase delta (pold) gene, complete
            cds
          Length = 3751

 Score = 44.1 bits (22), Expect = 0.57
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                      
Query: 188  aaatcaggctgaaatcctttcaagtt 213
            ||||||||||||||| ||||||||||
Sbjct: 1460 aaatcaggctgaaatgctttcaagtt 1485

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>dbj|AB027796.1| Schizosaccharomyces pombe gene for DNA polymerase delta large
           chain, partial cds, clone:H644
          Length = 551

 Score = 44.1 bits (22), Expect = 0.57
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 188 aaatcaggctgaaatcctttcaagtt 213
           ||||||||||||||| ||||||||||
Sbjct: 255 aaatcaggctgaaatgctttcaagtt 280

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>gb|AC154386.2| Mus musculus BAC clone RP23-27A13 from 13, complete sequence
          Length = 170110

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 378    cttcaacaactttgcaaactg 398
              |||||||||||||||||||||
Sbjct: 104074 cttcaacaactttgcaaactg 104094

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>emb|AL391703.9| Human DNA sequence from clone RP11-422P8 on chromosome 1 Contains the
             5' end of the GNG12 gene for guanine nucleotide binding
             protein (G protein), gamma 12, the 5' end of a novel gene
             (FLJ38762, FLJ42034) and a CpG island, complete sequence
          Length = 191741

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 252   atcttcccatcaaatcaaaacttccctct 280
             ||||||||||||||||| || ||||||||
Sbjct: 41107 atcttcccatcaaatcataatttccctct 41135

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>emb|AL136087.12| Human DNA sequence from clone RP1-137F1 on chromosome 6p21.1-21.2,
              complete sequence
          Length = 140136

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 527    cactttcagccccaccaaacc 547
              |||||||||||||||||||||
Sbjct: 107219 cactttcagccccaccaaacc 107199

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>emb|CT030714.5| Mouse DNA sequence from clone RP23-223P19 on chromosome 13, complete
            sequence
          Length = 176581

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 378  cttcaacaactttgcaaactg 398
            |||||||||||||||||||||
Sbjct: 9220 cttcaacaactttgcaaactg 9200

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>emb|BX000438.7| Zebrafish DNA sequence from clone CH211-209M20 in linkage group 20,
              complete sequence
          Length = 195087

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 93     tatgcttttatttaatctttt 113
              |||||||||||||||||||||
Sbjct: 175101 tatgcttttatttaatctttt 175081



 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 93     tatgcttttatttaatcttt 112
              ||||||||||||||||||||
Sbjct: 174472 tatgcttttatttaatcttt 174453

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>gb|AC154662.2| Mus musculus BAC clone RP24-279F20 from chromosome 13, complete
             sequence
          Length = 170831

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 378   cttcaacaactttgcaaactg 398
             |||||||||||||||||||||
Sbjct: 24368 cttcaacaactttgcaaactg 24388

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>gb|AC163280.2| Mus musculus BAC clone RP23-478G5 from chromosome 14, complete sequence
          Length = 202761

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 13    gccggagaagaactcaaaag 32
             ||||||||||||||||||||
Sbjct: 55590 gccggagaagaactcaaaag 55571

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>gb|AC154276.2| Mus musculus BAC clone RP24-260F19 from chromosome 14, complete
             sequence
          Length = 186529

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 13    gccggagaagaactcaaaag 32
             ||||||||||||||||||||
Sbjct: 86514 gccggagaagaactcaaaag 86533

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>gb|AC122287.4| Mus musculus BAC clone RP23-253A15 from 1, complete sequence
          Length = 226926

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 172   tcttcaggagccatgcaaat 191
             ||||||||||||||||||||
Sbjct: 73891 tcttcaggagccatgcaaat 73872

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>ref|XM_644357.1| Entamoeba histolytica HM-1:IMSS conserved hypothetical protein
            (301.t00002) partial mRNA
          Length = 6750

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 358  aaaatatgatgttcttgata 377
            ||||||||||||||||||||
Sbjct: 2466 aaaatatgatgttcttgata 2447

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>gb|AC079888.10| Oryza sativa chromosome 10 BAC OSJNBa0078O01 genomic sequence, complete
              sequence
          Length = 146664

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 250    gaatcttcccatcaaatcaa 269
              ||||||||||||||||||||
Sbjct: 110263 gaatcttcccatcaaatcaa 110282

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>ref|XM_672074.1| Plasmodium berghei strain ANKA hypothetical protein (PB000702.01.0)
           partial mRNA
          Length = 786

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 361 atatgatgttcttgatactt 380
           ||||||||||||||||||||
Sbjct: 633 atatgatgttcttgatactt 652

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>emb|AL137244.28| Human DNA sequence from clone RP11-173B14 on chromosome 13 Contains 2
             novel genes, the UCHL3 gene for ubiquitin
             carboxyl-terminal esterase L3 (ubiquitin thiolesterase),
             the 5' end of the LMO7 gene for LIM domain only 7
             (KIAA0858) and 2 CpG islands, complete sequence
          Length = 183358

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 17    gagaagaactcaaaagaatggtaatata 44
             |||||||| | |||||||||||||||||
Sbjct: 98967 gagaagaaataaaaagaatggtaatata 98940

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>emb|AL049651.2|HSJ753D10 Human DNA sequence from clone RP4-753D10 on chromosome 20 Contains the
             SSTR4 gene for somatostatin receptor 4, the THBD gene for
             thrombomodulin, two novel genes and two CpG islands,
             complete sequence
          Length = 97912

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 392   caaactgagatgctttgaga 411
             ||||||||||||||||||||
Sbjct: 33172 caaactgagatgctttgaga 33191

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>gb|AC161508.4| Mus musculus chromosome 1, clone RP23-95L22, complete sequence
          Length = 126735

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 207    tcaagtttactacgcacacacaca 230
              ||||||||| ||||||||||||||
Sbjct: 104378 tcaagtttaatacgcacacacaca 104355

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>emb|AL023586.1|HS426F10 Human DNA sequence from clone RP3-426F10 on chromosome 1p36.21-36.33
             Contains 3' end of the gene for the transmembrane protein
             SHREW1, complete sequence
          Length = 91640

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 91    aatatgcttttatttaatct 110
             ||||||||||||||||||||
Sbjct: 32413 aatatgcttttatttaatct 32432

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>emb|BX927156.1| Corynebacterium glutamicum ATCC 13032, IS fingerprint type 4-5, complete
              genome; segment 9/10
          Length = 349115

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 539    caccaaaccaaccaacaggt 558
              ||||||||||||||||||||
Sbjct: 325817 caccaaaccaaccaacaggt 325836

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>emb|BX927155.1| Corynebacterium glutamicum ATCC 13032, IS fingerprint type 4-5, complete
              genome; segment 8/10
          Length = 349136

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 539    caccaaaccaaccaacaggt 558
              ||||||||||||||||||||
Sbjct: 239877 caccaaaccaaccaacaggt 239896



 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 539    caccaaaccaaccaacaggt 558
              ||||||||||||||||||||
Sbjct: 231011 caccaaaccaaccaacaggt 231030

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>emb|BX927148.1| Corynebacterium glutamicum ATCC 13032, IS fingerprint type 4-5,
             complete genome; segment 1/10
          Length = 348071

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 539   caccaaaccaaccaacaggt 558
             ||||||||||||||||||||
Sbjct: 81748 caccaaaccaaccaacaggt 81729

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>emb|CR387929.4| Zebrafish DNA sequence from clone DKEY-172H18 in linkage group 5,
              complete sequence
          Length = 245364

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 588    ataatctcgtatgaattggc 607
              ||||||||||||||||||||
Sbjct: 213832 ataatctcgtatgaattggc 213813

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>gb|CP000240.1| Synechococcus sp. JA-2-3B'a(2-13), complete genome
          Length = 3046682

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 451     acaatcccggcaccggcata 470
               ||||||||||||||||||||
Sbjct: 2404544 acaatcccggcaccggcata 2404563

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>gb|AC035139.11| Homo sapiens chromosome 10 clone RP11-563N6, complete sequence
          Length = 210472

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 81     ataattatctaatatgcttt 100
              ||||||||||||||||||||
Sbjct: 158589 ataattatctaatatgcttt 158570

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>gb|AC011193.3| Homo sapiens chromosome 17, clone RP11-521P1, complete sequence
          Length = 181022

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 176   caggagccatgcaaatcagg 195
             ||||||||||||||||||||
Sbjct: 26081 caggagccatgcaaatcagg 26062

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>gb|AC060234.11| Homo sapiens chromosome 10 clone RP11-523O18, complete sequence
          Length = 170073

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 81    ataattatctaatatgcttt 100
             ||||||||||||||||||||
Sbjct: 20214 ataattatctaatatgcttt 20195

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>gb|AC069549.5| Homo sapiens chromosome 10 clone RP11-575A19, complete sequence
          Length = 170554

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 389    ttgcaaactgagatgctttg 408
              ||||||||||||||||||||
Sbjct: 157661 ttgcaaactgagatgctttg 157642

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>gb|AC104161.2| Homo sapiens chromosome 3 clone RP11-32J15, complete sequence
          Length = 166659

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 68   acaatcattgtacataatta 87
            ||||||||||||||||||||
Sbjct: 5032 acaatcattgtacataatta 5013

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>emb|BX511101.3| Zebrafish DNA sequence from clone DKEYP-92F1 in linkage group 2,
             complete sequence
          Length = 81968

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 588   ataatctcgtatgaattggc 607
             ||||||||||||||||||||
Sbjct: 24969 ataatctcgtatgaattggc 24988

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>gb|AF314192.1|AF314192 Corynebacterium glutamicum rrnE operon, complete sequence
          Length = 5631

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 539  caccaaaccaaccaacaggt 558
            ||||||||||||||||||||
Sbjct: 5486 caccaaaccaaccaacaggt 5467

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>gb|AC012336.9|AC012336 Homo sapiens chromosome 17, clone CTD-2236G12, complete sequence
          Length = 40405

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 176   caggagccatgcaaatcagg 195
             ||||||||||||||||||||
Sbjct: 11306 caggagccatgcaaatcagg 11325

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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 250      gaatcttcccatcaaatcaa 269
                ||||||||||||||||||||
Sbjct: 18606452 gaatcttcccatcaaatcaa 18606471

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>dbj|BA000036.3| Corynebacterium glutamicum ATCC 13032 DNA, complete genome
          Length = 3309401

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 539     caccaaaccaaccaacaggt 558
               ||||||||||||||||||||
Sbjct: 3146097 caccaaaccaaccaacaggt 3146116



 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 539     caccaaaccaaccaacaggt 558
               ||||||||||||||||||||
Sbjct: 2712705 caccaaaccaaccaacaggt 2712724



 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 539     caccaaaccaaccaacaggt 558
               ||||||||||||||||||||
Sbjct: 2703838 caccaaaccaaccaacaggt 2703857



 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 539   caccaaaccaaccaacaggt 558
             ||||||||||||||||||||
Sbjct: 81747 caccaaaccaaccaacaggt 81728

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>gb|AC007661.2|AC007661 Arabidopsis thaliana chromosome II section 205 of 255 of the complete
             sequence. Sequence from clones F13M22, T8P21, F16M14
          Length = 95612

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 280   tttctaagcattgtaatctc 299
             ||||||||||||||||||||
Sbjct: 95291 tttctaagcattgtaatctc 95310

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>emb|CR931778.23| Zebrafish DNA sequence from clone DKEY-265O4 in linkage group 4,
             complete sequence
          Length = 64016

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 95    tgcttttatttaatcttttg 114
             ||||||||||||||||||||
Sbjct: 52959 tgcttttatttaatcttttg 52978

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>emb|BX908751.8| Zebrafish DNA sequence from clone DKEY-223N17 in linkage group 18,
             complete sequence
          Length = 157961

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 154   gatatttttgtgattgcatcttca 177
             |||||||||||||| |||||||||
Sbjct: 14671 gatatttttgtgatagcatcttca 14648

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>emb|AL954147.12| Zebrafish DNA sequence from clone CH211-117H23 in linkage group 24,
              complete sequence
          Length = 188067

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 219    cgcacacacacaaaccgacg 238
              ||||||||||||||||||||
Sbjct: 112945 cgcacacacacaaaccgacg 112926

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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 250      gaatcttcccatcaaatcaa 269
                ||||||||||||||||||||
Sbjct: 18617305 gaatcttcccatcaaatcaa 18617324

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>emb|AL627212.21| Mouse DNA sequence from clone RP23-145E1 on chromosome 4, complete
            sequence
          Length = 207362

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 54   taaactggtttgttacaatc 73
            ||||||||||||||||||||
Sbjct: 6240 taaactggtttgttacaatc 6259

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>emb|AL929535.6| Zebrafish DNA sequence from clone CH211-151O1, complete sequence
          Length = 162436

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 531   ttcagccccaccaaaccaaccaac 554
             |||||||| |||||||||||||||
Sbjct: 15012 ttcagcccaaccaaaccaaccaac 14989

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>emb|AL365322.10| Mouse DNA sequence from clone RP23-282D4 on chromosome 1, complete
              sequence
          Length = 259487

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 207    tcaagtttactacgcacacacaca 230
              ||||||||| ||||||||||||||
Sbjct: 195812 tcaagtttaatacgcacacacaca 195835


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7,844,892
Number of Sequences: 3902068
Number of extensions: 7844892
Number of successful extensions: 158369
Number of sequences better than 10.0: 53
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 158067
Number of HSP's gapped (non-prelim): 302
length of query: 650
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 627
effective length of database: 17,143,297,704
effective search space: 10748847660408
effective search space used: 10748847660408
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result