ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal33m11 |
|---|---|
| Clone Library Name | barley_pub |
>gb|M55446.1|BLYRCAA1 Hordeum vulgare rubisco activase (RcaA1) mRNA, 3' end Length = 1394 Score = 1249 bits (630), Expect = 0.0 Identities = 641/645 (99%) Strand = Plus / Minus Query: 10 aatgggtatactnaatatatttagagatatattaacaaaacatgcccagcaatcgcttgg 69 ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1392 aatgggtatacacaatatatttagagatatattaacaaaacatgcccagcaatcgcttgg 1333 Query: 70 atgcgatgcggacttaggtaggtaaaacatcagatattaaaagtggcatgcttaaaaggt 129 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1332 atgcgatgcggacttaggtaggtaaaacatcagatattaaaagtggcatgcttaaaaggt 1273 Query: 130 gtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtc 189 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1272 gtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtc 1213 Query: 190 ggtgcaaccttccggcacgggcaaagtaccttgctgtgctcctttaccgtagaaggaacc 249 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1212 ggtgcaaccttccggcacgggcaaagtaccttgctgtgctcctttaccgtagaaggaacc 1153 Query: 250 agtcttcatcgcatcctggttagcatcacccagagctgcctggctcatgtaggtgtcagc 309 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1152 agtcttcatcgcatcctggttagcatcacccagagctgcctggctcatgtaggtgtcagc 1093 Query: 310 aagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgtactctagcag 369 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1092 aagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgtactctagcag 1033 Query: 370 cttctcgactgtcatctttggctgctcgaaggtcacgggcccgtcccgcgagttcaccag 429 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1032 cttctcgactgtcatctttggctgctcgaaggtcacgggcccgtcccgcgagttcaccag 973 Query: 430 cctcttgccaatgttctcgattccggtagagccgacccacttgcgcacctcatcgtcgta 489 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 972 cctcttgccaatgttctcgattccggtagagccgacccacttgcgcacctcatcgtcgta 913 Query: 490 cacccgagcacgcagagcaccgaaaaagtcaatggattgtcctgggaaggtgtcgacgat 549 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 912 cacccgagcacgcagagcaccgaaaaagtcaatggattgtcctgggaaggtgtcgacgat 853 Query: 550 cttgacgacagactcgtcactgacattgtcggtctggaagatacccttgcagacaccgat 609 ||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct: 852 ctttacgacagactcgtcacagacattgtcggtctggaagatacccttgcagacaccgat 793 Query: 610 acggtcgtcacgggtgggagcccagtagaacttctccatacgacc 654 ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 792 acggtcgtcacgggtgggagcccagtagaacttctccatacgacc 748
>gb|M55447.1|BLYRCAA2 Hordeum vulgare rubisco activase (RcaA2) mRNA, complete cds Length = 1709 Score = 817 bits (412), Expect = 0.0 Identities = 418/420 (99%) Strand = Plus / Minus Query: 235 accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 294 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1422 accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 1363 Query: 295 catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 354 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1362 catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 1303 Query: 355 cccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtc 414 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1302 cccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtc 1243 Query: 415 ccgcgagttcaccagcctcttgccaatgttctcgattccggtagagccgacccacttgcg 474 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1242 ccgcgagttcaccagcctcttgccaatgttctcgattccggtagagccgacccacttgcg 1183 Query: 475 cacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatggattgtcctgg 534 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1182 cacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatggattgtcctgg 1123 Query: 535 gaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcggtctggaagatacc 594 |||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| Sbjct: 1122 gaaggtgtcgacgatctttacgacagactcgtcacagacattgtcggtctggaagatacc 1063 Query: 595 cttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttctccatacgacc 654 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1062 cttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttctccatacgacc 1003 Score = 383 bits (193), Expect = e-103 Identities = 226/232 (97%), Gaps = 4/232 (1%) Strand = Plus / Minus Query: 10 aatgggtatactnaatat-atttagagatatattaacaaaacatgcccagcaatcgcttg 68 ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 1702 aatgggtatacacaatattatttagagatatattaacaaaacatgcccagcaatcgcttg 1643 Query: 69 gatgcgatgcggacttag-gtaggtaaaacatcagatattaaaagtggcatgcttaaaag 127 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 1642 gatgcgatgcggacttagtgtaggtaaaacatcagatattaaaagtggcatgcttaaaag 1583 Query: 128 gtgtaaaggcagctgccgt-cgtcgctccttgccgttgggtcgtagttcttggcattttg 186 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct: 1582 gtgtaaaggcagctgccgttcgtcgctccttgccgttgggtcgtagttcttggcattttg 1523 Query: 187 gtcggtgcaaccttccggca-cgggcaaagtaccttgctgtgctcctttacc 237 |||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct: 1522 gtcggtgcaaccttccggcatcgggcaaagtaccttgctgtgctcctttacc 1471
>gb|AY312573.1| Deschampsia antarctica Rubisco activase alpha form precursor (RCA1) mRNA, complete cds; nuclear gene for chloroplast product Length = 1616 Score = 749 bits (378), Expect = 0.0 Identities = 504/546 (92%) Strand = Plus / Minus Query: 109 aaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtc 168 |||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct: 1489 aaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgcggttgggtc 1430 Query: 169 gtagttcttggcattttggtcggtgcaaccttccggcacgggcaaagtaccttgctgtgc 228 | |||||||||||| ||||||| |||||||||||||| |||||||| ||||| ||||| Sbjct: 1429 gaagttcttggcatcccggtcggtacaaccttccggcacaggcaaagtgccttgttgtgc 1370 Query: 229 tcctttaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgc 288 |||||||||||||||||||||||||||||| ||||||| ||| ||||||||||||||||| Sbjct: 1369 tcctttaccgtagaaggaaccagtcttcatggcatccttgttcgcatcacccagagctgc 1310 Query: 289 ctggctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgag 348 |||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| || Sbjct: 1309 ctggctcatgtaagtgtccgcaagctgcacacgcttgacattgtcctgctcctggacaag 1250 Query: 349 catgtgcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacggg 408 |||||| |||||||| |||| |||||| || |||||||| |||||||||||||| ||||| Sbjct: 1249 catgtggccgtactccagcaacttctccaccgtcatcttgggctgctcgaaggtgacggg 1190 Query: 409 cccgtcccgcgagttcaccagcctcttgccaatgttctcgattccggtagagccgaccca 468 ||||||||||||||||||||||||||||| |||||||| |||||||| || ||||| Sbjct: 1189 tccgtcccgcgagttcaccagcctcttgccgatgttctcaattccggtggacgacaccca 1130 Query: 469 cttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatggattg 528 |||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||| || Sbjct: 1129 cttgcgcacctcgtcgtcgtacacccgagcacgcagagcaccgaagaagtcgatggactg 1070 Query: 529 tcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcggtctggaa 588 ||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| Sbjct: 1069 tcctgggaaggtgtcgacgatcttgacgacagactcgtcgctgacgttgtcggtctggaa 1010 Query: 589 gatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttctccat 648 ||||||||||||||| ||||||||||| || |||||||| |||||||| ||||||||||| Sbjct: 1009 gatacccttgcagacgccgatacggtcctcgcgggtgggcgcccagtaaaacttctccat 950 Query: 649 acgacc 654 |||||| Sbjct: 949 acgacc 944
>gb|AY206372.1| Triticum aestivum ribulose-1,5-bisphosphate carboxylase activase precursor RNA, partial cds; nuclear gene for chloroplast product Length = 850 Score = 714 bits (360), Expect = 0.0 Identities = 405/420 (96%) Strand = Plus / Minus Query: 235 accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 294 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 492 accgtagaaggtaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 433 Query: 295 catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 354 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 432 catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 373 Query: 355 cccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtc 414 ||||||||||||||||||||| |||||||||||||||||||| |||||||| || ||||| Sbjct: 372 cccgtactctagcagcttctccactgtcatctttggctgctcaaaggtcactggtccgtc 313 Query: 415 ccgcgagttcaccagcctcttgccaatgttctcgattccggtagagccgacccacttgcg 474 |||||||||||||||| ||||||||||||||||||| ||||||||| ||||||||||| Sbjct: 312 ccgcgagttcaccagcttcttgccaatgttctcgataccggtagaggtcacccacttgcg 253 Query: 475 cacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatggattgtcctgg 534 |||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 252 cacctcgtcgtcgtacacccgagcacgcagagcaccgaaaaagtcgatggattgtcctgg 193 Query: 535 gaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcggtctggaagatacc 594 |||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| Sbjct: 192 gaaggtgtcgacgatcttgacgacggactcgtcgctgacattgtcggtctggaagatacc 133 Query: 595 cttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttctccatacgacc 654 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct: 132 cttgcagacaccgatacggtcgtcgcgggtgggagcccagtagaacttctccatacgacc 73 Score = 246 bits (124), Expect = 8e-62 Identities = 189/208 (90%), Gaps = 7/208 (3%) Strand = Plus / Minus Query: 36 atatattaacaaaacatgcccagcaatcgcttggatgcgatgcgg-acttaggta----- 89 ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 746 atatattaacaaaacatgcccagcaatcgcttggatgcgatgcggtacttaggtacaaag 687 Query: 90 ggtaaaacatcagatattaaaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgt 149 | ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 686 gataaaacatcagatattaaat-tggcatgcttaaaaggtgtaaaggcagctgccgtcgt 628 Query: 150 cgctccttgccgttgggtcgtagttcttggcattttggtcggtgcaaccttccggcacgg 209 | ||||| |||||||||||| ||||||||||| | ||||||||||| ||| |||| || | Sbjct: 627 cactcctcgccgttgggtcgaagttcttggcagtctggtcggtgcatcctgccggtacag 568 Query: 210 gcaaagtaccttgctgtgctcctttacc 237 ||||||||||||||||||| |||||||| Sbjct: 567 gcaaagtaccttgctgtgcccctttacc 540
>gb|BC029790.1| Homo sapiens, clone IMAGE:5192697, mRNA Length = 1643 Score = 714 bits (360), Expect = 0.0 Identities = 405/420 (96%) Strand = Plus / Minus Query: 235 accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 294 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1342 accgtagaaggtaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 1283 Query: 295 catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 354 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1282 catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 1223 Query: 355 cccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtc 414 ||||||||||||||||||||| |||||||||||||||||||| |||||||| || ||||| Sbjct: 1222 cccgtactctagcagcttctccactgtcatctttggctgctcaaaggtcactggtccgtc 1163 Query: 415 ccgcgagttcaccagcctcttgccaatgttctcgattccggtagagccgacccacttgcg 474 |||||||||||||||| ||||||||||||||||||| ||||||||| ||||||||||| Sbjct: 1162 ccgcgagttcaccagcttcttgccaatgttctcgataccggtagaggtcacccacttgcg 1103 Query: 475 cacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatggattgtcctgg 534 |||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 1102 cacctcgtcgtcgtacacccgagcacgcagagcaccgaaaaagtcgatggattgtcctgg 1043 Query: 535 gaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcggtctggaagatacc 594 |||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| Sbjct: 1042 gaaggtgtcgacgatcttgacgacggactcgtcgctgacattgtcggtctggaagatacc 983 Query: 595 cttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttctccatacgacc 654 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct: 982 cttgcagacaccgatacggtcgtcgcgggtgggagcccagtagaacttctccatacgacc 923 Score = 246 bits (124), Expect = 8e-62 Identities = 189/208 (90%), Gaps = 7/208 (3%) Strand = Plus / Minus Query: 36 atatattaacaaaacatgcccagcaatcgcttggatgcgatgcgg-acttaggta----- 89 ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 1596 atatattaacaaaacatgcccagcaatcgcttggatgcgatgcggtacttaggtacaaag 1537 Query: 90 ggtaaaacatcagatattaaaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgt 149 | ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 1536 gataaaacatcagatattaaat-tggcatgcttaaaaggtgtaaaggcagctgccgtcgt 1478 Query: 150 cgctccttgccgttgggtcgtagttcttggcattttggtcggtgcaaccttccggcacgg 209 | ||||| |||||||||||| ||||||||||| | ||||||||||| ||| |||| || | Sbjct: 1477 cactcctcgccgttgggtcgaagttcttggcagtctggtcggtgcatcctgccggtacag 1418 Query: 210 gcaaagtaccttgctgtgctcctttacc 237 ||||||||||||||||||| |||||||| Sbjct: 1417 gcaaagtaccttgctgtgcccctttacc 1390
>gb|AY312574.1| Deschampsia antarctica Rubisco activase beta form precursor (RCA2) mRNA, complete cds; nuclear gene for chloroplast product Length = 1646 Score = 581 bits (293), Expect = e-162 Identities = 388/420 (92%) Strand = Plus / Minus Query: 235 accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 294 |||||||||||||||||||||||| ||||||| ||| ||||||||||||||||||||||| Sbjct: 1353 accgtagaaggaaccagtcttcatggcatccttgttcgcatcacccagagctgcctggct 1294 Query: 295 catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 354 |||||| ||||| |||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 1293 catgtaagtgtccgcaagctgcacacgcttgacattgtcctgctcctggacaagcatgtg 1234 Query: 355 cccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtc 414 |||||||| |||| |||||| || |||||||| |||||||||||||| ||||| ||||| Sbjct: 1233 gccgtactccagcaacttctccaccgtcatcttgggctgctcgaaggtgacgggtccgtc 1174 Query: 415 ccgcgagttcaccagcctcttgccaatgttctcgattccggtagagccgacccacttgcg 474 |||||||||||||||||||||||| |||||||| |||||||| || ||||||||||| Sbjct: 1173 ccgcgagttcaccagcctcttgccgatgttctcaattccggtggacgacacccacttgcg 1114 Query: 475 cacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatggattgtcctgg 534 ||||||| ||||||||||||||||||||||||||||||| ||||| ||||| |||||||| Sbjct: 1113 cacctcaacgtcgtacacccgagcacgcagagcaccgaagaagtcgatggactgtcctgg 1054 Query: 535 gaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcggtctggaagatacc 594 ||| ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| Sbjct: 1053 gaangtgtcgacgatcttgacgacagactcgtcgctgacgttgtcggtctggaagatacc 994 Query: 595 cttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttctccatacgacc 654 ||||||||| ||||||||||| || |||||||| |||||||||||||||||||||||||| Sbjct: 993 cttgcagacgccgatacggtcctcgcgggtgggcgcccagtagaacttctccatacgacc 934 Score = 180 bits (91), Expect = 4e-42 Identities = 171/195 (87%), Gaps = 7/195 (3%) Strand = Plus / Minus Query: 50 catgcccagcaatcgcttggatgcgatgcgga-cttaggtag-----gtaaaacatcaga 103 ||||||||||| ||||||| ||||||||||| |||||||| || |||||||||| Sbjct: 1593 catgcccagcagtcgcttgtatgcgatgcggtgcttaggtacaaagagtgaaacatcaga 1534 Query: 104 -tattaaaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgt 162 || | |||||||||||||||||||||||||||||||||||||||||||||||| || || Sbjct: 1533 ataattaaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgcggt 1474 Query: 163 tgggtcgtagttcttggcattttggtcggtgcaaccttccggcacgggcaaagtaccttg 222 ||||||| |||||||||||| ||||||| |||||||||||||| |||||||| ||||| Sbjct: 1473 tgggtcgaagttcttggcatcccggtcggtacaaccttccggcacaggcaaagtgccttg 1414 Query: 223 ctgtgctcctttacc 237 |||||||||||||| Sbjct: 1413 ttgtgctcctttacc 1399
>gb|M55449.1|BLYRCABG Hordeum vulgare subsp. vulgare ribulose 1,5-bisphosphate carboxylase activase (RcaB) gene, complete cds; and ribulose 1,5-bisphosphate carboxylase activase (RcaA) gene, alternatively spliced, complete cds Length = 8766 Score = 565 bits (285), Expect = e-158 Identities = 285/285 (100%) Strand = Plus / Minus Query: 235 accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 294 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7305 accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 7246 Query: 295 catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 354 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7245 catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 7186 Query: 355 cccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtc 414 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7185 cccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtc 7126 Query: 415 ccgcgagttcaccagcctcttgccaatgttctcgattccggtagagccgacccacttgcg 474 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7125 ccgcgagttcaccagcctcttgccaatgttctcgattccggtagagccgacccacttgcg 7066 Query: 475 cacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtc 519 ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7065 cacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtc 7021 Score = 442 bits (223), Expect = e-121 Identities = 235/238 (98%), Gaps = 1/238 (0%) Strand = Plus / Minus Query: 1 gtctttgccaa-tgggtatactnaatatatttagagatatattaacaaaacatgcccagc 59 ||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 7762 gtctttgccaaatgggtatacacaatatatttagagatatattaacaaaacatgcccagc 7703 Query: 60 aatcgcttggatgcgatgcggacttaggtaggtaaaacatcagatattaaaagtggcatg 119 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7702 aatcgcttggatgcgatgcggacttaggtaggtaaaacatcagatattaaaagtggcatg 7643 Query: 120 cttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttgg 179 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7642 cttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttgg 7583 Query: 180 cattttggtcggtgcaaccttccggcacgggcaaagtaccttgctgtgctcctttacc 237 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7582 cattttggtcggtgcaaccttccggcacgggcaaagtaccttgctgtgctcctttacc 7525 Score = 270 bits (136), Expect = 5e-69 Identities = 136/136 (100%) Strand = Plus / Minus Query: 519 caatggattgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgt 578 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6880 caatggattgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgt 6821 Query: 579 cggtctggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtaga 638 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6820 cggtctggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtaga 6761 Query: 639 acttctccatacgacc 654 |||||||||||||||| Sbjct: 6760 acttctccatacgacc 6745 Score = 129 bits (65), Expect = 1e-26 Identities = 158/189 (83%) Strand = Plus / Minus Query: 460 gccgacccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtc 519 ||||||||||||||||||||| |||||||||||||| || ||||| || ||||| ||||| Sbjct: 3812 gccgacccacttgcgcacctcgtcgtcgtacacccgtgcccgcagcgcgccgaagaagtc 3753 Query: 520 aatggattgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgtc 579 ||||| || || ||||||||||| || | | | || || | |||||| ||| ||||| Sbjct: 3752 gatggactgccccgggaaggtgtccaccagcctcaccacggcctcgtccgggacgttgtc 3693 Query: 580 ggtctggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaa 639 ||| ||||||| |||||||| || ||||| ||||| || |||||||| ||||||||||| Sbjct: 3692 ggtgcggaagatgcccttgcacacgccgatgcggtcctcgcgggtgggcgcccagtagaa 3633 Query: 640 cttctccat 648 ||||||||| Sbjct: 3632 cttctccat 3624 Score = 81.8 bits (41), Expect = 3e-12 Identities = 77/89 (86%) Strand = Plus / Minus Query: 311 agctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgtactctagcagc 370 ||||||||||||||||| || |||||||||||||| |||||||| |||||||| | ||| Sbjct: 3961 agctgcacacgcttgacgttctcctgctcctggaccagcatgtggccgtactccatgagc 3902 Query: 371 ttctcgactgtcatctttggctgctcgaa 399 ||||| | |||||||| ||||| ||||| Sbjct: 3901 ttctctatggtcatcttgggctggtcgaa 3873
>emb|AJ635203.1| Triticum durum ssp. durum partial mRNA for putative rubisco activase (rba1 gene) Length = 321 Score = 486 bits (245), Expect = e-134 Identities = 275/285 (96%) Strand = Plus / Minus Query: 235 accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 294 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 286 accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 227 Query: 295 catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 354 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 226 catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 167 Query: 355 cccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtc 414 |||||||||||||||||||||||||||||||||||||||||| |||||||| || ||||| Sbjct: 166 cccgtactctagcagcttctcgactgtcatctttggctgctcaaaggtcactggtccgtc 107 Query: 415 ccgcgagttcaccagcctcttgccaatgttctcgattccggtagagccgacccacttgcg 474 |||||||||||| ||| ||||||||||||||||||| ||||||||| ||||||||||| Sbjct: 106 ccgcgagttcacaagcttcttgccaatgttctcgataccggtagaggtcacccacttgcg 47 Query: 475 cacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtc 519 |||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 46 cacctcgtcgtcgtacacccgagcacgcagagcaccgaaaaagtc 2
>dbj|AB110180.1| Oryza sativa (japonica cultivar-group) mRNA for ribulose-bisphosphate carboxylase activase large isoform precursor protein, complete cds, clone: 13YPR038 Length = 1558 Score = 236 bits (119), Expect = 7e-59 Identities = 280/333 (84%), Gaps = 3/333 (0%) Strand = Plus / Minus Query: 118 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 177 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 1430 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1371 Query: 178 ggcattttggtcggtgcaaccttccggcacgggcaaagtac---cttgctgtgctccttt 234 |||| |||||||||||||||||||||| |||| ||| ||||||||||||||| Sbjct: 1370 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1311 Query: 235 accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 294 ||||||||||||||||||||||| || || |||||| ||||| ||||| |||| ||| Sbjct: 1310 cccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgct 1251 Query: 295 catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 354 || ||| ||||| ||||||||||||||||| || |||||||||| || ||||||| Sbjct: 1250 caagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgta 1191 Query: 355 cccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtc 414 |||||||| | ||||| |||| |||||||| ||||||||||| | || || || Sbjct: 1190 tccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccctc 1131 Query: 415 ccgcgagttcaccagcctcttgccaatgttctc 447 || |||||||||||||||||||||||||||||| Sbjct: 1130 cctcgagttcaccagcctcttgccaatgttctc 1098 Score = 182 bits (92), Expect = 1e-42 Identities = 164/188 (87%) Strand = Plus / Minus Query: 464 acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatg 523 ||||||||||||||||| |||||||| || || ||||| ||||| ||||| || || ||| Sbjct: 1081 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaagaaatcgatg 1022 Query: 524 gattgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcggtc 583 ||||| ||||||||| |||||||||||||||||| |||||| ||| |||||||| Sbjct: 1021 gattggcctgggaagctgtcgacgatcttgacgatgtcctcgtcggggacgttgtcggtg 962 Query: 584 tggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttc 643 ||||||||||||||||||| |||| ||||||||| |||||||||||||||||||||||| Sbjct: 961 cggaagatacccttgcagacgccgacacggtcgtcgcgggtgggagcccagtagaacttc 902 Query: 644 tccatacg 651 |||||||| Sbjct: 901 tccatacg 894
>dbj|AB034698.1| Oryza sativa OsrcaA1 mRNA for RuBisCO activase large isoform precursor, complete cds Length = 1623 Score = 236 bits (119), Expect = 7e-59 Identities = 280/333 (84%), Gaps = 3/333 (0%) Strand = Plus / Minus Query: 118 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 177 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 1465 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1406 Query: 178 ggcattttggtcggtgcaaccttccggcacgggcaaagtac---cttgctgtgctccttt 234 |||| |||||||||||||||||||||| |||| ||| ||||||||||||||| Sbjct: 1405 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1346 Query: 235 accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 294 ||||||||||||||||||||||| || || |||||| ||||| ||||| |||| ||| Sbjct: 1345 cccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgct 1286 Query: 295 catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 354 || ||| ||||| ||||||||||||||||| || |||||||||| || ||||||| Sbjct: 1285 caagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgta 1226 Query: 355 cccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtc 414 |||||||| | ||||| |||| |||||||| ||||||||||| | || || || Sbjct: 1225 tccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccctc 1166 Query: 415 ccgcgagttcaccagcctcttgccaatgttctc 447 || |||||||||||||||||||||||||||||| Sbjct: 1165 cctcgagttcaccagcctcttgccaatgttctc 1133 Score = 182 bits (92), Expect = 1e-42 Identities = 164/188 (87%) Strand = Plus / Minus Query: 464 acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatg 523 ||||||||||||||||| |||||||| || || ||||| ||||| ||||| || || ||| Sbjct: 1116 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaagaaatcgatg 1057 Query: 524 gattgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcggtc 583 ||||| ||||||||| |||||||||||||||||| |||||| ||| |||||||| Sbjct: 1056 gattggcctgggaagctgtcgacgatcttgacgatgtcctcgtcggggacgttgtcggtg 997 Query: 584 tggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttc 643 ||||||||||||||||||| |||| ||||||||| |||||||||||||||||||||||| Sbjct: 996 cggaagatacccttgcagacgccgacacggtcgtcgcgggtgggagcccagtagaacttc 937 Query: 644 tccatacg 651 |||||||| Sbjct: 936 tccatacg 929
>gb|U74321.1|OSU74321 Oryza sativa ribulose-1,5-bisphosphate carboxylase/oxygenase activase (rca) mRNA, complete cds Length = 1675 Score = 182 bits (92), Expect = 1e-42 Identities = 164/188 (87%) Strand = Plus / Minus Query: 464 acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatg 523 ||||||||||||||||| |||||||| || || ||||| ||||| ||||| || || ||| Sbjct: 1086 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaagaaatcgatg 1027 Query: 524 gattgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcggtc 583 ||||| ||||||||| |||||||||||||||||| |||||| ||| |||||||| Sbjct: 1026 gattggcctgggaagctgtcgacgatcttgacgatgtcctcgtcggggacgttgtcggtg 967 Query: 584 tggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttc 643 ||||||||||||||||||| |||| ||||||||| |||||||||||||||||||||||| Sbjct: 966 cggaagatacccttgcagacgccgacacggtcgtcgcgggtgggagcccagtagaacttc 907 Query: 644 tccatacg 651 |||||||| Sbjct: 906 tccatacg 899 Score = 133 bits (67), Expect = 8e-28 Identities = 88/95 (92%) Strand = Plus / Minus Query: 118 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 177 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 1520 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1461 Query: 178 ggcattttggtcggtgcaaccttccggcacgggca 212 |||| |||||||||||||||||||||| |||| Sbjct: 1460 ggcaacagggtcggtgcaaccttccggcacaggca 1426 Score = 121 bits (61), Expect = 3e-24 Identities = 175/213 (82%) Strand = Plus / Minus Query: 235 accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 294 |||||||||||||||||||||||| || || |||||| ||||| ||||| |||| ||| Sbjct: 1315 accgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgct 1256 Query: 295 catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 354 || ||| ||||| ||||||||||||||||| || |||||||||| || ||||||| Sbjct: 1255 caagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgta 1196 Query: 355 cccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtc 414 |||||||| | ||||| |||| |||||||| ||||||||||| | || || || Sbjct: 1195 tccgtactcgatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccctc 1136 Query: 415 ccgcgagttcaccagcctcttgccaatgttctc 447 || |||||||||||||||||||||||||||||| Sbjct: 1135 cctcgagttcaccagcctcttgccaatgttctc 1103
>gb|AF349638.1|AF349638 Oryza sativa ribulose-1,5-bisphosphate carboxylase activase mRNA, partial cds; nuclear gene for chloroplast product Length = 651 Score = 182 bits (92), Expect = 1e-42 Identities = 164/188 (87%) Strand = Plus / Minus Query: 464 acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatg 523 ||||||||||||||||| |||||||| || || ||||| ||||| ||||| || || ||| Sbjct: 335 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaagaaatcgatg 276 Query: 524 gattgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcggtc 583 ||||| ||||||||| |||||||||||||||||| |||||| ||| |||||||| Sbjct: 275 gattggcctgggaagctgtcgacgatcttgacgatgtcctcgtcggggacgttgtcggtg 216 Query: 584 tggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttc 643 ||||||||||||||||||| |||| ||||||||| |||||||||||||||||||||||| Sbjct: 215 cggaagatacccttgcagacgccgacacggtcgtcgcgggtgggagcccagtagaacttc 156 Query: 644 tccatacg 651 |||||||| Sbjct: 155 tccatacg 148 Score = 121 bits (61), Expect = 3e-24 Identities = 175/213 (82%) Strand = Plus / Minus Query: 235 accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 294 |||||||||||||||||||||||| || || |||||| ||||| ||||| |||| ||| Sbjct: 564 accgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgct 505 Query: 295 catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 354 || ||| ||||| ||||||||||||||||| || |||||||||| || ||||||| Sbjct: 504 caagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgta 445 Query: 355 cccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtc 414 |||||||| | ||||| |||| |||||||| ||||||||||| | || || || Sbjct: 444 tccgtactcgatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccctc 385 Query: 415 ccgcgagttcaccagcctcttgccaatgttctc 447 || |||||||||||||||||||||||||||||| Sbjct: 384 cctcgagttcaccagcctcttgccaatgttctc 352
>dbj|AK119513.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-200-F01, full insert sequence Length = 1721 Score = 182 bits (92), Expect = 1e-42 Identities = 164/188 (87%) Strand = Plus / Minus Query: 464 acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatg 523 ||||||||||||||||| |||||||| || || ||||| ||||| ||||| || || ||| Sbjct: 1129 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaagaaatcgatg 1070 Query: 524 gattgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcggtc 583 ||||| ||||||||| |||||||||||||||||| |||||| ||| |||||||| Sbjct: 1069 gattggcctgggaagctgtcgacgatcttgacgatgtcctcgtcggggacgttgtcggtg 1010 Query: 584 tggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttc 643 ||||||||||||||||||| |||| ||||||||| |||||||||||||||||||||||| Sbjct: 1009 cggaagatacccttgcagacgccgacacggtcgtcgcgggtgggagcccagtagaacttc 950 Query: 644 tccatacg 651 |||||||| Sbjct: 949 tccatacg 942 Score = 121 bits (61), Expect = 3e-24 Identities = 175/213 (82%) Strand = Plus / Minus Query: 235 accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 294 |||||||||||||||||||||||| || || |||||| ||||| ||||| |||| ||| Sbjct: 1358 accgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgct 1299 Query: 295 catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 354 || ||| ||||| ||||||||||||||||| || |||||||||| || ||||||| Sbjct: 1298 caagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgta 1239 Query: 355 cccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtc 414 |||||||| | ||||| |||| |||||||| ||||||||||| | || || || Sbjct: 1238 tccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccctc 1179 Query: 415 ccgcgagttcaccagcctcttgccaatgttctc 447 || |||||||||||||||||||||||||||||| Sbjct: 1178 cctcgagttcaccagcctcttgccaatgttctc 1146 Score = 117 bits (59), Expect = 5e-23 Identities = 87/95 (91%), Gaps = 1/95 (1%) Strand = Plus / Minus Query: 118 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 177 ||||||||||||||||||||||||||||||||||||||| |||||||||||| | ||||| Sbjct: 1562 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcg-aattctt 1504 Query: 178 ggcattttggtcggtgcaaccttccggcacgggca 212 |||| |||||||||||||||||||||| |||| Sbjct: 1503 ggcaacagggtcggtgcaaccttccggcacaggca 1469
>dbj|AK104332.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-032-F04, full insert sequence Length = 1682 Score = 182 bits (92), Expect = 1e-42 Identities = 164/188 (87%) Strand = Plus / Minus Query: 464 acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatg 523 ||||||||||||||||| |||||||| || || ||||| ||||| ||||| || || ||| Sbjct: 1080 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaagaaatcgatg 1021 Query: 524 gattgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcggtc 583 ||||| ||||||||| |||||||||||||||||| |||||| ||| |||||||| Sbjct: 1020 gattggcctgggaagctgtcgacgatcttgacgatgtcctcgtcggggacgttgtcggtg 961 Query: 584 tggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttc 643 ||||||||||||||||||| |||| ||||||||| |||||||||||||||||||||||| Sbjct: 960 cggaagatacccttgcagacgccgacacggtcgtcgcgggtgggagcccagtagaacttc 901 Query: 644 tccatacg 651 |||||||| Sbjct: 900 tccatacg 893 Score = 133 bits (67), Expect = 8e-28 Identities = 88/95 (92%) Strand = Plus / Minus Query: 118 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 177 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 1514 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1455 Query: 178 ggcattttggtcggtgcaaccttccggcacgggca 212 |||| |||||||||||||||||||||| |||| Sbjct: 1454 ggcaacagggtcggtgcaaccttccggcacaggca 1420 Score = 121 bits (61), Expect = 3e-24 Identities = 175/213 (82%) Strand = Plus / Minus Query: 235 accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 294 |||||||||||||||||||||||| || || |||||| ||||| ||||| |||| ||| Sbjct: 1309 accgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgct 1250 Query: 295 catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 354 || ||| ||||| ||||||||||||||||| || |||||||||| || ||||||| Sbjct: 1249 caagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgta 1190 Query: 355 cccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtc 414 |||||||| | ||||| |||| |||||||| ||||||||||| | || || || Sbjct: 1189 tccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccctc 1130 Query: 415 ccgcgagttcaccagcctcttgccaatgttctc 447 || |||||||||||||||||||||||||||||| Sbjct: 1129 cctcgagttcaccagcctcttgccaatgttctc 1097
>dbj|AK064986.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001C24, full insert sequence Length = 1680 Score = 182 bits (92), Expect = 1e-42 Identities = 164/188 (87%) Strand = Plus / Minus Query: 464 acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatg 523 ||||||||||||||||| |||||||| || || ||||| ||||| ||||| || || ||| Sbjct: 1118 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaagaaatcgatg 1059 Query: 524 gattgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcggtc 583 ||||| ||||||||| |||||||||||||||||| |||||| ||| |||||||| Sbjct: 1058 gattggcctgggaagctgtcgacgatcttgacgatgtcctcgtcggggacgttgtcggtg 999 Query: 584 tggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttc 643 ||||||||||||||||||| |||| ||||||||| |||||||||||||||||||||||| Sbjct: 998 cggaagatacccttgcagacgccgacacggtcgtcgcgggtgggagcccagtagaacttc 939 Query: 644 tccatacg 651 |||||||| Sbjct: 938 tccatacg 931 Score = 133 bits (67), Expect = 8e-28 Identities = 88/95 (92%) Strand = Plus / Minus Query: 118 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 177 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 1552 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1493 Query: 178 ggcattttggtcggtgcaaccttccggcacgggca 212 |||| |||||||||||||||||||||| |||| Sbjct: 1492 ggcaacagggtcggtgcaaccttccggcacaggca 1458 Score = 121 bits (61), Expect = 3e-24 Identities = 175/213 (82%) Strand = Plus / Minus Query: 235 accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 294 |||||||||||||||||||||||| || || |||||| ||||| ||||| |||| ||| Sbjct: 1347 accgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgct 1288 Query: 295 catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 354 || ||| ||||| ||||||||||||||||| || |||||||||| || ||||||| Sbjct: 1287 caagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgta 1228 Query: 355 cccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtc 414 |||||||| | ||||| |||| |||||||| ||||||||||| | || || || Sbjct: 1227 tccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccctc 1168 Query: 415 ccgcgagttcaccagcctcttgccaatgttctc 447 || |||||||||||||||||||||||||||||| Sbjct: 1167 cctcgagttcaccagcctcttgccaatgttctc 1135
>dbj|AK060847.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-E04, full insert sequence Length = 1691 Score = 182 bits (92), Expect = 1e-42 Identities = 164/188 (87%) Strand = Plus / Minus Query: 464 acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatg 523 ||||||||||||||||| |||||||| || || ||||| ||||| ||||| || || ||| Sbjct: 1117 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaagaaatcgatg 1058 Query: 524 gattgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcggtc 583 ||||| ||||||||| |||||||||||||||||| |||||| ||| |||||||| Sbjct: 1057 gattggcctgggaagctgtcgacgatcttgacgatgtcctcgtcggggacgttgtcggtg 998 Query: 584 tggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttc 643 ||||||||||||||||||| |||| ||||||||| |||||||||||||||||||||||| Sbjct: 997 cggaagatacccttgcagacgccgacacggtcgtcgcgggtgggagcccagtagaacttc 938 Query: 644 tccatacg 651 |||||||| Sbjct: 937 tccatacg 930 Score = 133 bits (67), Expect = 8e-28 Identities = 88/95 (92%) Strand = Plus / Minus Query: 118 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 177 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 1551 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1492 Query: 178 ggcattttggtcggtgcaaccttccggcacgggca 212 |||| |||||||||||||||||||||| |||| Sbjct: 1491 ggcaacagggtcggtgcaaccttccggcacaggca 1457 Score = 121 bits (61), Expect = 3e-24 Identities = 175/213 (82%) Strand = Plus / Minus Query: 235 accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 294 |||||||||||||||||||||||| || || |||||| ||||| ||||| |||| ||| Sbjct: 1346 accgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgct 1287 Query: 295 catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 354 || ||| ||||| ||||||||||||||||| || |||||||||| || ||||||| Sbjct: 1286 caagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgta 1227 Query: 355 cccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtc 414 |||||||| | ||||| |||| |||||||| ||||||||||| | || || || Sbjct: 1226 tccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccctc 1167 Query: 415 ccgcgagttcaccagcctcttgccaatgttctc 447 || |||||||||||||||||||||||||||||| Sbjct: 1166 cctcgagttcaccagcctcttgccaatgttctc 1134
>dbj|AK060841.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-D05, full insert sequence Length = 1470 Score = 182 bits (92), Expect = 1e-42 Identities = 164/188 (87%) Strand = Plus / Minus Query: 464 acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatg 523 ||||||||||||||||| |||||||| || || ||||| ||||| ||||| || || ||| Sbjct: 901 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaagaaatcgatg 842 Query: 524 gattgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcggtc 583 ||||| ||||||||| |||||||||||||||||| |||||| ||| |||||||| Sbjct: 841 gattggcctgggaagctgtcgacgatcttgacgatgtcctcgtcggggacgttgtcggtg 782 Query: 584 tggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttc 643 ||||||||||||||||||| |||| ||||||||| |||||||||||||||||||||||| Sbjct: 781 cggaagatacccttgcagacgccgacacggtcgtcgcgggtgggagcccagtagaacttc 722 Query: 644 tccatacg 651 |||||||| Sbjct: 721 tccatacg 714 Score = 133 bits (67), Expect = 8e-28 Identities = 88/95 (92%) Strand = Plus / Minus Query: 118 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 177 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 1335 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1276 Query: 178 ggcattttggtcggtgcaaccttccggcacgggca 212 |||| |||||||||||||||||||||| |||| Sbjct: 1275 ggcaacagggtcggtgcaaccttccggcacaggca 1241 Score = 121 bits (61), Expect = 3e-24 Identities = 175/213 (82%) Strand = Plus / Minus Query: 235 accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 294 |||||||||||||||||||||||| || || |||||| ||||| ||||| |||| ||| Sbjct: 1130 accgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgct 1071 Query: 295 catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 354 || ||| ||||| ||||||||||||||||| || |||||||||| || ||||||| Sbjct: 1070 caagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgta 1011 Query: 355 cccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtc 414 |||||||| | ||||| |||| |||||||| ||||||||||| | || || || Sbjct: 1010 tccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccctc 951 Query: 415 ccgcgagttcaccagcctcttgccaatgttctc 447 || |||||||||||||||||||||||||||||| Sbjct: 950 cctcgagttcaccagcctcttgccaatgttctc 918
>dbj|AB034748.1| Oryza sativa OsrcaA2 mRNA for RuBisCO activase small isoform precursor, complete cds Length = 1706 Score = 182 bits (92), Expect = 1e-42 Identities = 164/188 (87%) Strand = Plus / Minus Query: 464 acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatg 523 ||||||||||||||||| |||||||| || || ||||| ||||| ||||| || || ||| Sbjct: 1122 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaagaaatcgatg 1063 Query: 524 gattgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcggtc 583 ||||| ||||||||| |||||||||||||||||| |||||| ||| |||||||| Sbjct: 1062 gattggcctgggaagctgtcgacgatcttgacgatgtcctcgtcggggacgttgtcggtg 1003 Query: 584 tggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttc 643 ||||||||||||||||||| |||| ||||||||| |||||||||||||||||||||||| Sbjct: 1002 cggaagatacccttgcagacgccgacacggtcgtcgcgggtgggagcccagtagaacttc 943 Query: 644 tccatacg 651 |||||||| Sbjct: 942 tccatacg 935 Score = 133 bits (67), Expect = 8e-28 Identities = 88/95 (92%) Strand = Plus / Minus Query: 118 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 177 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 1556 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1497 Query: 178 ggcattttggtcggtgcaaccttccggcacgggca 212 |||| |||||||||||||||||||||| |||| Sbjct: 1496 ggcaacagggtcggtgcaaccttccggcacaggca 1462 Score = 121 bits (61), Expect = 3e-24 Identities = 175/213 (82%) Strand = Plus / Minus Query: 235 accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 294 |||||||||||||||||||||||| || || |||||| ||||| ||||| |||| ||| Sbjct: 1351 accgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgct 1292 Query: 295 catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 354 || ||| ||||| ||||||||||||||||| || |||||||||| || ||||||| Sbjct: 1291 caagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgta 1232 Query: 355 cccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtc 414 |||||||| | ||||| |||| |||||||| ||||||||||| | || || || Sbjct: 1231 tccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccctc 1172 Query: 415 ccgcgagttcaccagcctcttgccaatgttctc 447 || |||||||||||||||||||||||||||||| Sbjct: 1171 cctcgagttcaccagcctcttgccaatgttctc 1139
>gb|AF251264.1|AF251264 Triticum aestivum ribulose bisphosphate carboxylase activase B (RcaB) mRNA, complete cds; nuclear gene for chloroplast product Length = 1525 Score = 170 bits (86), Expect = 4e-39 Identities = 275/338 (81%) Strand = Plus / Minus Query: 311 agctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgtactctagcagc 370 |||||||| ||||| || || |||||||||||||| |||||||| |||||||| | ||| Sbjct: 1242 agctgcacgcgcttcacgttctcctgctcctggaccagcatgtggccgtactccatgagc 1183 Query: 371 ttctcgactgtcatctttggctgctcgaaggtcacgggcccgtcccgcgagttcaccagc 430 ||||||| |||||||| ||||| ||||| ||| ||||| |||| ||||| || ||| Sbjct: 1182 ttctcgatggtcatcttgggctggtcgaacgtcggcggcccctccctggagttgacgagc 1123 Query: 431 ctcttgccaatgttctcgattccggtagagccgacccacttgcgcacctcatcgtcgtac 490 | |||| |||||||||| ||| | ||||||||||||||||||||| ||||||||| Sbjct: 1122 cgcttggagatgttctcgacgccgatctcgccgacccacttgcgcacctcgtcgtcgtac 1063 Query: 491 acccgagcacgcagagcaccgaaaaagtcaatggattgtcctgggaaggtgtcgacgatc 550 ||||| || ||||| || ||||| ||||| ||||| || || ||||||||||| || | | Sbjct: 1062 acccgcgcccgcagcgcgccgaagaagtcgatggactgccccgggaaggtgtccaccagc 1003 Query: 551 ttgacgacagactcgtcactgacattgtcggtctggaagatacccttgcagacaccgata 610 | || || | |||||| ||| |||||||| ||||||| |||||||| || ||||| Sbjct: 1002 ctcaccacggcctcgtcggggacgttgtcggtgcggaagatgcccttgcacacgccgatg 943 Query: 611 cggtcgtcacgggtgggagcccagtagaacttctccat 648 ||||| || |||||||| |||||||||||||||||||| Sbjct: 942 cggtcctcccgggtgggcgcccagtagaacttctccat 905
>gb|AC137064.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0003C04 map S10003, complete sequence Length = 119238 Score = 141 bits (71), Expect = 3e-30 Identities = 116/131 (88%) Strand = Plus / Plus Query: 521 atggattgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcg 580 |||||||| ||||||||| |||||||||||||||||| |||||| ||| |||||| Sbjct: 108688 atggattggcctgggaagctgtcgacgatcttgacgatgtcctcgtcggggacgttgtcg 108747 Query: 581 gtctggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaac 640 || ||||||||||||||||||| |||| ||||||||| ||||||||||||||||||||| Sbjct: 108748 gtgcggaagatacccttgcagacgccgacacggtcgtcgcgggtgggagcccagtagaac 108807 Query: 641 ttctccatacg 651 ||||||||||| Sbjct: 108808 ttctccatacg 108818 Score = 133 bits (67), Expect = 8e-28 Identities = 88/95 (92%) Strand = Plus / Plus Query: 118 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 177 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 107158 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 107217 Query: 178 ggcattttggtcggtgcaaccttccggcacgggca 212 |||| |||||||||||||||||||||| |||| Sbjct: 107218 ggcaacagggtcggtgcaaccttccggcacaggca 107252 Score = 121 bits (61), Expect = 3e-24 Identities = 175/213 (82%) Strand = Plus / Plus Query: 235 accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 294 |||||||||||||||||||||||| || || |||||| ||||| ||||| |||| ||| Sbjct: 108310 accgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgct 108369 Query: 295 catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 354 || ||| ||||| ||||||||||||||||| || |||||||||| || ||||||| Sbjct: 108370 caagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgta 108429 Query: 355 cccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtc 414 |||||||| | ||||| |||| |||||||| ||||||||||| | || || || Sbjct: 108430 tccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccctc 108489 Query: 415 ccgcgagttcaccagcctcttgccaatgttctc 447 || |||||||||||||||||||||||||||||| Sbjct: 108490 cctcgagttcaccagcctcttgccaatgttctc 108522 Score = 56.0 bits (28), Expect = 2e-04 Identities = 55/64 (85%) Strand = Plus / Plus Query: 585 ggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttct 644 ||||||| ||| |||| || || || ||||| || ||||||||||||||||||||||| | Sbjct: 112456 ggaagatgcccctgcacacgccaatgcggtcctcgcgggtgggagcccagtagaacttgt 112515 Query: 645 ccat 648 |||| Sbjct: 112516 ccat 112519 Score = 54.0 bits (27), Expect = 6e-04 Identities = 63/75 (84%) Strand = Plus / Plus Query: 136 gcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgca 195 ||||||||||||||||||||| || || ||||||||||| ||| |||||||||||| Sbjct: 112053 gcagctgccgtcgtcgctcctggcggtagggtcgtagttggcggcgcgttggtcggtgca 112112 Query: 196 accttccggcacggg 210 || |||||||||| Sbjct: 112113 tcccgccggcacggg 112127 Score = 52.0 bits (26), Expect = 0.002 Identities = 44/50 (88%) Strand = Plus / Plus Query: 464 acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaa 513 ||||||||||||||||| |||||||| || || ||||| ||||| ||||| Sbjct: 108539 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaa 108588 Score = 42.1 bits (21), Expect = 2.3 Identities = 27/29 (93%) Strand = Plus / Plus Query: 419 gagttcaccagcctcttgccaatgttctc 447 ||||||||||||||| |||| |||||||| Sbjct: 112324 gagttcaccagcctcctgccgatgttctc 112352
>gb|AC133008.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0026K20 map S10559, complete sequence Length = 115996 Score = 141 bits (71), Expect = 3e-30 Identities = 116/131 (88%) Strand = Plus / Plus Query: 521 atggattgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcg 580 |||||||| ||||||||| |||||||||||||||||| |||||| ||| |||||| Sbjct: 30565 atggattggcctgggaagctgtcgacgatcttgacgatgtcctcgtcggggacgttgtcg 30624 Query: 581 gtctggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaac 640 || ||||||||||||||||||| |||| ||||||||| ||||||||||||||||||||| Sbjct: 30625 gtgcggaagatacccttgcagacgccgacacggtcgtcgcgggtgggagcccagtagaac 30684 Query: 641 ttctccatacg 651 ||||||||||| Sbjct: 30685 ttctccatacg 30695 Score = 133 bits (67), Expect = 8e-28 Identities = 88/95 (92%) Strand = Plus / Plus Query: 118 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 177 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 29039 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 29098 Query: 178 ggcattttggtcggtgcaaccttccggcacgggca 212 |||| |||||||||||||||||||||| |||| Sbjct: 29099 ggcaacagggtcggtgcaaccttccggcacaggca 29133 Score = 121 bits (61), Expect = 3e-24 Identities = 175/213 (82%) Strand = Plus / Plus Query: 235 accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 294 |||||||||||||||||||||||| || || |||||| ||||| ||||| |||| ||| Sbjct: 30187 accgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgct 30246 Query: 295 catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 354 || ||| ||||| ||||||||||||||||| || |||||||||| || ||||||| Sbjct: 30247 caagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgta 30306 Query: 355 cccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtc 414 |||||||| | ||||| |||| |||||||| ||||||||||| | || || || Sbjct: 30307 tccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccctc 30366 Query: 415 ccgcgagttcaccagcctcttgccaatgttctc 447 || |||||||||||||||||||||||||||||| Sbjct: 30367 cctcgagttcaccagcctcttgccaatgttctc 30399 Score = 56.0 bits (28), Expect = 2e-04 Identities = 55/64 (85%) Strand = Plus / Plus Query: 585 ggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttct 644 ||||||| ||| |||| || || || ||||| || ||||||||||||||||||||||| | Sbjct: 34333 ggaagatgcccctgcacacgccaatgcggtcctcgcgggtgggagcccagtagaacttgt 34392 Query: 645 ccat 648 |||| Sbjct: 34393 ccat 34396 Score = 54.0 bits (27), Expect = 6e-04 Identities = 63/75 (84%) Strand = Plus / Plus Query: 136 gcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgca 195 ||||||||||||||||||||| || || ||||||||||| ||| |||||||||||| Sbjct: 33930 gcagctgccgtcgtcgctcctggcggtagggtcgtagttggcggcgcgttggtcggtgca 33989 Query: 196 accttccggcacggg 210 || |||||||||| Sbjct: 33990 tcccgccggcacggg 34004 Score = 52.0 bits (26), Expect = 0.002 Identities = 44/50 (88%) Strand = Plus / Plus Query: 464 acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaa 513 ||||||||||||||||| |||||||| || || ||||| ||||| ||||| Sbjct: 30416 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaa 30465 Score = 42.1 bits (21), Expect = 2.3 Identities = 27/29 (93%) Strand = Plus / Plus Query: 419 gagttcaccagcctcttgccaatgttctc 447 ||||||||||||||| |||| |||||||| Sbjct: 34201 gagttcaccagcctcctgccgatgttctc 34229
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 141 bits (71), Expect = 3e-30 Identities = 116/131 (88%) Strand = Plus / Plus Query: 521 atggattgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcg 580 |||||||| ||||||||| |||||||||||||||||| |||||| ||| |||||| Sbjct: 28303827 atggattggcctgggaagctgtcgacgatcttgacgatgtcctcgtcggggacgttgtcg 28303886 Query: 581 gtctggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaac 640 || ||||||||||||||||||| |||| ||||||||| ||||||||||||||||||||| Sbjct: 28303887 gtgcggaagatacccttgcagacgccgacacggtcgtcgcgggtgggagcccagtagaac 28303946 Query: 641 ttctccatacg 651 ||||||||||| Sbjct: 28303947 ttctccatacg 28303957 Score = 133 bits (67), Expect = 8e-28 Identities = 88/95 (92%) Strand = Plus / Plus Query: 118 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 177 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 28302301 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 28302360 Query: 178 ggcattttggtcggtgcaaccttccggcacgggca 212 |||| |||||||||||||||||||||| |||| Sbjct: 28302361 ggcaacagggtcggtgcaaccttccggcacaggca 28302395 Score = 121 bits (61), Expect = 3e-24 Identities = 175/213 (82%) Strand = Plus / Plus Query: 235 accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 294 |||||||||||||||||||||||| || || |||||| ||||| ||||| |||| ||| Sbjct: 28303449 accgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgct 28303508 Query: 295 catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 354 || ||| ||||| ||||||||||||||||| || |||||||||| || ||||||| Sbjct: 28303509 caagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgta 28303568 Query: 355 cccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtc 414 |||||||| | ||||| |||| |||||||| ||||||||||| | || || || Sbjct: 28303569 tccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccctc 28303628 Query: 415 ccgcgagttcaccagcctcttgccaatgttctc 447 || |||||||||||||||||||||||||||||| Sbjct: 28303629 cctcgagttcaccagcctcttgccaatgttctc 28303661 Score = 56.0 bits (28), Expect = 2e-04 Identities = 55/64 (85%) Strand = Plus / Plus Query: 585 ggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttct 644 ||||||| ||| |||| || || || ||||| || ||||||||||||||||||||||| | Sbjct: 28307595 ggaagatgcccctgcacacgccaatgcggtcctcgcgggtgggagcccagtagaacttgt 28307654 Query: 645 ccat 648 |||| Sbjct: 28307655 ccat 28307658 Score = 54.0 bits (27), Expect = 6e-04 Identities = 63/75 (84%) Strand = Plus / Plus Query: 136 gcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgca 195 ||||||||||||||||||||| || || ||||||||||| ||| |||||||||||| Sbjct: 28307192 gcagctgccgtcgtcgctcctggcggtagggtcgtagttggcggcgcgttggtcggtgca 28307251 Query: 196 accttccggcacggg 210 || |||||||||| Sbjct: 28307252 tcccgccggcacggg 28307266 Score = 52.0 bits (26), Expect = 0.002 Identities = 44/50 (88%) Strand = Plus / Plus Query: 464 acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaa 513 ||||||||||||||||| |||||||| || || ||||| ||||| ||||| Sbjct: 28303678 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaa 28303727 Score = 42.1 bits (21), Expect = 2.3 Identities = 27/29 (93%) Strand = Plus / Plus Query: 419 gagttcaccagcctcttgccaatgttctc 447 ||||||||||||||| |||| |||||||| Sbjct: 28307463 gagttcaccagcctcctgccgatgttctc 28307491
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 141 bits (71), Expect = 3e-30 Identities = 116/131 (88%) Strand = Plus / Plus Query: 521 atggattgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcg 580 |||||||| ||||||||| |||||||||||||||||| |||||| ||| |||||| Sbjct: 28286276 atggattggcctgggaagctgtcgacgatcttgacgatgtcctcgtcggggacgttgtcg 28286335 Query: 581 gtctggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaac 640 || ||||||||||||||||||| |||| ||||||||| ||||||||||||||||||||| Sbjct: 28286336 gtgcggaagatacccttgcagacgccgacacggtcgtcgcgggtgggagcccagtagaac 28286395 Query: 641 ttctccatacg 651 ||||||||||| Sbjct: 28286396 ttctccatacg 28286406 Score = 133 bits (67), Expect = 8e-28 Identities = 88/95 (92%) Strand = Plus / Plus Query: 118 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 177 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 28284750 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 28284809 Query: 178 ggcattttggtcggtgcaaccttccggcacgggca 212 |||| |||||||||||||||||||||| |||| Sbjct: 28284810 ggcaacagggtcggtgcaaccttccggcacaggca 28284844 Score = 121 bits (61), Expect = 3e-24 Identities = 175/213 (82%) Strand = Plus / Plus Query: 235 accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 294 |||||||||||||||||||||||| || || |||||| ||||| ||||| |||| ||| Sbjct: 28285898 accgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgct 28285957 Query: 295 catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 354 || ||| ||||| ||||||||||||||||| || |||||||||| || ||||||| Sbjct: 28285958 caagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgta 28286017 Query: 355 cccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtc 414 |||||||| | ||||| |||| |||||||| ||||||||||| | || || || Sbjct: 28286018 tccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccctc 28286077 Query: 415 ccgcgagttcaccagcctcttgccaatgttctc 447 || |||||||||||||||||||||||||||||| Sbjct: 28286078 cctcgagttcaccagcctcttgccaatgttctc 28286110 Score = 56.0 bits (28), Expect = 2e-04 Identities = 55/64 (85%) Strand = Plus / Plus Query: 585 ggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttct 644 ||||||| ||| |||| || || || ||||| || ||||||||||||||||||||||| | Sbjct: 28290044 ggaagatgcccctgcacacgccaatgcggtcctcgcgggtgggagcccagtagaacttgt 28290103 Query: 645 ccat 648 |||| Sbjct: 28290104 ccat 28290107 Score = 54.0 bits (27), Expect = 6e-04 Identities = 63/75 (84%) Strand = Plus / Plus Query: 136 gcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgca 195 ||||||||||||||||||||| || || ||||||||||| ||| |||||||||||| Sbjct: 28289641 gcagctgccgtcgtcgctcctggcggtagggtcgtagttggcggcgcgttggtcggtgca 28289700 Query: 196 accttccggcacggg 210 || |||||||||| Sbjct: 28289701 tcccgccggcacggg 28289715 Score = 52.0 bits (26), Expect = 0.002 Identities = 44/50 (88%) Strand = Plus / Plus Query: 464 acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaa 513 ||||||||||||||||| |||||||| || || ||||| ||||| ||||| Sbjct: 28286127 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaa 28286176 Score = 42.1 bits (21), Expect = 2.3 Identities = 27/29 (93%) Strand = Plus / Plus Query: 419 gagttcaccagcctcttgccaatgttctc 447 ||||||||||||||| |||| |||||||| Sbjct: 28289912 gagttcaccagcctcctgccgatgttctc 28289940
>gb|M55448.1|BLYRCAB Hordeum vulgare rubisco activase (RcaB) mRNA, complete cds Length = 1656 Score = 129 bits (65), Expect = 1e-26 Identities = 158/189 (83%) Strand = Plus / Minus Query: 460 gccgacccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtc 519 ||||||||||||||||||||| |||||||||||||| || ||||| || ||||| ||||| Sbjct: 1243 gccgacccacttgcgcacctcgtcgtcgtacacccgtgcccgcagcgcgccgaagaagtc 1184 Query: 520 aatggattgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgtc 579 ||||| || || ||||||||||| || | | | || || | |||||| ||| ||||| Sbjct: 1183 gatggactgccccgggaaggtgtccaccagcctcaccacggcctcgtccgggacgttgtc 1124 Query: 580 ggtctggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaa 639 ||| ||||||| |||||||| || ||||| ||||| || |||||||| ||||||||||| Sbjct: 1123 ggtgcggaagatgcccttgcacacgccgatgcggtcctcgcgggtgggcgcccagtagaa 1064 Query: 640 cttctccat 648 ||||||||| Sbjct: 1063 cttctccat 1055 Score = 81.8 bits (41), Expect = 3e-12 Identities = 77/89 (86%) Strand = Plus / Minus Query: 311 agctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgtactctagcagc 370 ||||||||||||||||| || |||||||||||||| |||||||| |||||||| | ||| Sbjct: 1392 agctgcacacgcttgacgttctcctgctcctggaccagcatgtggccgtactccatgagc 1333 Query: 371 ttctcgactgtcatctttggctgctcgaa 399 ||||| | |||||||| ||||| ||||| Sbjct: 1332 ttctctatggtcatcttgggctggtcgaa 1304
>gb|DQ359157.1| Oryza sativa (japonica cultivar-group) chloroplast RuBisCO small isoform precursor, mRNA, partial cds; nuclear gene for chloroplast product Length = 93 Score = 121 bits (61), Expect = 3e-24 Identities = 82/89 (92%) Strand = Plus / Minus Query: 124 aaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcatt 183 ||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| Sbjct: 93 aaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttcttggcaac 34 Query: 184 ttggtcggtgcaaccttccggcacgggca 212 |||||||||||||||||||||| |||| Sbjct: 33 agggtcggtgcaaccttccggcacaggca 5
>gb|AF338238.1|AF338238 Zantedeschia aethiopica rubisco activase (rca2) mRNA, partial cds Length = 1436 Score = 119 bits (60), Expect = 1e-23 Identities = 165/200 (82%) Strand = Plus / Minus Query: 239 tagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatg 298 |||||||| |||||||| ||||| ||||| || || ||||| |||||||||| ||||| | Sbjct: 1000 tagaaggatccagtcttgatcgcgtcctgattggcgtcaccaagagctgcctcgctcagg 941 Query: 299 taggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccg 358 || |||| || |||||||| | ||| || || ||||||||||| || ||||||| ||| Sbjct: 940 tacttgtcggccagctgcaccctcttcacgttctcctgctcctgcaccagcatgttgccg 881 Query: 359 tactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtcccgc 418 ||||| |||||||| || | |||||||| |||||| |||| ||| ||||| ||| || Sbjct: 880 tactccagcagcttgtccagggtcatcttgggctgcgcgaacgtcggcggcccctccagc 821 Query: 419 gagttcaccagcctcttgcc 438 |||||||||||||||||||| Sbjct: 820 gagttcaccagcctcttgcc 801 Score = 113 bits (57), Expect = 7e-22 Identities = 156/189 (82%) Strand = Plus / Minus Query: 466 ccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatgga 525 |||||| | |||||| |||||||| |||| || | ||| |||||||| ||||||||||| Sbjct: 773 ccacttcctcacctcgtcgtcgtagaccctcgccctcagtgcaccgaagaagtcaatgga 714 Query: 526 ttgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcggtctg 585 ||| || |||||||||||||||| ||||| |||| ||| | ||| ||||||| | Sbjct: 713 ttggccggggaaggtgtcgacgagcttgatgacatcctccttggggacgttgtcggacct 654 Query: 586 gaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttctc 645 ||||||||| ||||||| |||| ||||| || | |||||||||||||||||||||||| Sbjct: 653 gaagataccggtgcagacgccgacccggtcatccctggtgggagcccagtagaacttctc 594 Query: 646 catacgacc 654 ||||||||| Sbjct: 593 catacgacc 585 Score = 67.9 bits (34), Expect = 4e-08 Identities = 64/74 (86%) Strand = Plus / Minus Query: 128 gtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttgg 187 ||||| ||||||||||| ||||||||||| ||||| |||||| |||| ||||||| || Sbjct: 1149 gtgtacaggcagctgccatcgtcgctcctggccgtcgggtcgaagttggtggcattccgg 1090 Query: 188 tcggtgcaaccttc 201 ||||| |||||||| Sbjct: 1089 tcggtacaaccttc 1076
>gb|AF338237.1|AF338237 Zantedeschia aethiopica rubisco activase (rca1) mRNA, partial cds Length = 1597 Score = 119 bits (60), Expect = 1e-23 Identities = 165/200 (82%) Strand = Plus / Minus Query: 239 tagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatg 298 |||||||| |||||||| ||||| ||||| || || ||||| |||||||||| ||||| | Sbjct: 1194 tagaaggatccagtcttgatcgcgtcctgattggcgtcaccaagagctgcctcgctcagg 1135 Query: 299 taggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccg 358 || |||| || |||||||| | ||| || || ||||||||||| || ||||||| ||| Sbjct: 1134 tacttgtcggccagctgcaccctcttcacgttctcctgctcctgcaccagcatgttgccg 1075 Query: 359 tactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtcccgc 418 ||||| |||||||| || | |||||||| |||||| |||| ||| ||||| ||| || Sbjct: 1074 tactccagcagcttgtccagggtcatcttgggctgcgcgaacgtcggcggcccctccagc 1015 Query: 419 gagttcaccagcctcttgcc 438 |||||||||||||||||||| Sbjct: 1014 gagttcaccagcctcttgcc 995 Score = 113 bits (57), Expect = 7e-22 Identities = 156/189 (82%) Strand = Plus / Minus Query: 466 ccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatgga 525 |||||| | |||||| |||||||| |||| || | ||| |||||||| ||||||||||| Sbjct: 967 ccacttcctcacctcgtcgtcgtagaccctcgccctcagtgcaccgaagaagtcaatgga 908 Query: 526 ttgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcggtctg 585 ||| || |||||||||||||||| ||||| |||| ||| | ||| ||||||| | Sbjct: 907 ttggccggggaaggtgtcgacgagcttgatgacatcctccttggggacgttgtcggacct 848 Query: 586 gaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttctc 645 ||||||||| ||||||| |||| ||||| || | |||||||||||||||||||||||| Sbjct: 847 gaagataccggtgcagacgccgacccggtcatccctggtgggagcccagtagaacttctc 788 Query: 646 catacgacc 654 ||||||||| Sbjct: 787 catacgacc 779 Score = 67.9 bits (34), Expect = 4e-08 Identities = 64/74 (86%) Strand = Plus / Minus Query: 128 gtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttgg 187 ||||| ||||||||||| ||||||||||| ||||| |||||| |||| ||||||| || Sbjct: 1305 gtgtacaggcagctgccatcgtcgctcctggccgtcgggtcgaagttggtggcattccgg 1246 Query: 188 tcggtgcaaccttc 201 ||||| |||||||| Sbjct: 1245 tcggtacaaccttc 1232
>gb|AY117142.1| Chenopodium quinoa rubisco activase (rca) mRNA, complete cds Length = 1809 Score = 113 bits (57), Expect = 7e-22 Identities = 126/149 (84%) Strand = Plus / Minus Query: 506 gcaccgaaaaagtcaatggattgtcctgggaaggtgtcgacgatcttgacgacagactcg 565 |||||||| || ||||| ||||| || |||||||||||||||| |||||| || || Sbjct: 1164 gcaccgaagaaatcaatagattggccagggaaggtgtcgacgagcttgacaacgtggtcc 1105 Query: 566 tcactgacattgtcggtctggaagatacccttgcagacaccgatacggtcgtcacgggtg 625 ||| |||||||||||| ||||||||| || |||||||||||||| ||||||||| Sbjct: 1104 tcaggaacattgtcggtcctgaagataccggtggcaacaccgatacggtcctcacgggtg 1045 Query: 626 ggagcccagtagaacttctccatacgacc 654 ||||||||||||||||||||||||||||| Sbjct: 1044 ggagcccagtagaacttctccatacgacc 1016
>gb|AF338240.1|AF338240 Zantedeschia aethiopica rubisco activase (rca4) mRNA, partial cds Length = 1674 Score = 113 bits (57), Expect = 7e-22 Identities = 156/189 (82%) Strand = Plus / Minus Query: 466 ccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatgga 525 |||||| | |||||| |||||||| |||| || | ||| |||||||| ||||||||||| Sbjct: 1074 ccacttcctcacctcgtcgtcgtagaccctcgccctcagtgcaccgaagaagtcaatgga 1015 Query: 526 ttgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcggtctg 585 ||| || |||||||||||||||| ||||| |||| ||| | ||| ||||||| | Sbjct: 1014 ttggccggggaaggtgtcgacgagcttgatgacatcctccttggggacgttgtcggacct 955 Query: 586 gaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttctc 645 ||||||||| ||||||| |||| ||||| || | |||||||||||||||||||||||| Sbjct: 954 gaagataccggtgcagacgccgacccggtcatccctggtgggagcccagtagaacttctc 895 Query: 646 catacgacc 654 ||||||||| Sbjct: 894 catacgacc 886 Score = 97.6 bits (49), Expect = 4e-17 Identities = 160/197 (81%) Strand = Plus / Minus Query: 239 tagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatg 298 |||||||| |||||||| ||||| ||||| || || ||||| |||||||||| ||||| | Sbjct: 1301 tagaaggatccagtcttgatcgcgtcctgattggcgtcaccaagagctgcctcgctcagg 1242 Query: 299 taggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccg 358 || |||| || |||||||| | ||| || || ||||| ||||| || ||||| | ||| Sbjct: 1241 tacttgtcggccagctgcaccctcttcacgttctcctgttcctgcaccagcatattgccg 1182 Query: 359 tactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtcccgc 418 ||||| |||||||| || | |||||||| |||||| |||| ||| ||||| ||| || Sbjct: 1181 tactccagcagcttgtccagggtcatcttgggctgcgcgaacgtcggcggcccctccagc 1122 Query: 419 gagttcaccagcctctt 435 ||||||||||||||||| Sbjct: 1121 gagttcaccagcctctt 1105 Score = 67.9 bits (34), Expect = 4e-08 Identities = 64/74 (86%) Strand = Plus / Minus Query: 128 gtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttgg 187 ||||| ||||||||||| ||||||||||| ||||| |||||| |||| ||||||| || Sbjct: 1450 gtgtacaggcagctgccatcgtcgctcctggccgtcgggtcgaagttggtggcattccgg 1391 Query: 188 tcggtgcaaccttc 201 ||||| |||||||| Sbjct: 1390 tcggtacaaccttc 1377
>gb|AF338239.1|AF338239 Zantedeschia aethiopica rubisco activase (rca3) mRNA, partial cds Length = 1494 Score = 113 bits (57), Expect = 7e-22 Identities = 156/189 (82%) Strand = Plus / Minus Query: 466 ccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatgga 525 |||||| | |||||| |||||||| |||| || | ||| |||||||| ||||||||||| Sbjct: 937 ccacttcctcacctcgtcgtcgtagaccctcgccctcagtgcaccgaagaagtcaatgga 878 Query: 526 ttgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcggtctg 585 ||| || |||||||||||||||| ||||| |||| ||| | ||| ||||||| | Sbjct: 877 ttggccggggaaggtgtcgacgagcttgatgacatcctccttggggacgttgtcggacct 818 Query: 586 gaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttctc 645 ||||||||| ||||||| |||| ||||| || | |||||||||||||||||||||||| Sbjct: 817 gaagataccggtgcagacgccgacccggtcatccctggtgggagcccagtagaacttctc 758 Query: 646 catacgacc 654 ||||||||| Sbjct: 757 catacgacc 749 Score = 97.6 bits (49), Expect = 4e-17 Identities = 160/197 (81%) Strand = Plus / Minus Query: 239 tagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatg 298 |||||||| |||||||| ||||| ||||| || || ||||| |||||||||| ||||| | Sbjct: 1164 tagaaggatccagtcttgatcgcgtcctgattggcgtcaccaagagctgcctcgctcagg 1105 Query: 299 taggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccg 358 || |||| || |||||||| | ||| || || ||||| ||||| || ||||| | ||| Sbjct: 1104 tacttgtcggccagctgcaccctcttcacgttctcctgttcctgcaccagcatattgccg 1045 Query: 359 tactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtcccgc 418 ||||| |||||||| || | |||||||| |||||| |||| ||| ||||| ||| || Sbjct: 1044 tactccagcagcttgtccagggtcatcttgggctgcgcgaacgtcggcggcccctccagc 985 Query: 419 gagttcaccagcctctt 435 ||||||||||||||||| Sbjct: 984 gagttcaccagcctctt 968 Score = 67.9 bits (34), Expect = 4e-08 Identities = 64/74 (86%) Strand = Plus / Minus Query: 128 gtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttgg 187 ||||| ||||||||||| ||||||||||| ||||| |||||| |||| ||||||| || Sbjct: 1275 gtgtacaggcagctgccatcgtcgctcctggccgtcgggtcgaagttggtggcattccgg 1216 Query: 188 tcggtgcaaccttc 201 ||||| |||||||| Sbjct: 1215 tcggtacaaccttc 1202
>ref|NM_179989.1| Arabidopsis thaliana RCA (RUBISCO ACTIVASE) AT2G39730 (RCA) transcript variant AT2G39730.2 mRNA, complete cds Length = 1815 Score = 107 bits (54), Expect = 5e-20 Identities = 63/66 (95%) Strand = Plus / Minus Query: 586 gaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttctc 645 |||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||| Sbjct: 1134 gaagatacccttgcagacaccgatacggtcttcacgggtcggggcccagtagaacttctc 1075 Query: 646 catacg 651 |||||| Sbjct: 1074 catacg 1069
>ref|NM_179990.1| Arabidopsis thaliana RCA (RUBISCO ACTIVASE) AT2G39730 (RCA) transcript variant AT2G39730.3 mRNA, complete cds Length = 1928 Score = 107 bits (54), Expect = 5e-20 Identities = 63/66 (95%) Strand = Plus / Minus Query: 586 gaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttctc 645 |||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||| Sbjct: 1134 gaagatacccttgcagacaccgatacggtcttcacgggtcggggcccagtagaacttctc 1075 Query: 646 catacg 651 |||||| Sbjct: 1074 catacg 1069
>ref|NM_129531.2| Arabidopsis thaliana RCA (RUBISCO ACTIVASE) AT2G39730 (RCA) transcript variant AT2G39730.1 mRNA, complete cds Length = 1833 Score = 107 bits (54), Expect = 5e-20 Identities = 63/66 (95%) Strand = Plus / Minus Query: 586 gaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttctc 645 |||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||| Sbjct: 1163 gaagatacccttgcagacaccgatacggtcttcacgggtcggggcccagtagaacttctc 1104 Query: 646 catacg 651 |||||| Sbjct: 1103 catacg 1098
>gb|BT000710.1| Arabidopsis thaliana clone RAFL09-90-K08 (R19890) unknown protein (At2g39730) mRNA, complete cds Length = 1697 Score = 107 bits (54), Expect = 5e-20 Identities = 63/66 (95%) Strand = Plus / Minus Query: 586 gaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttctc 645 |||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||| Sbjct: 1045 gaagatacccttgcagacaccgatacggtcttcacgggtcggggcccagtagaacttctc 986 Query: 646 catacg 651 |||||| Sbjct: 985 catacg 980
>gb|BT000613.1| Arabidopsis thaliana Rubsico activase (At2g39730/T5I7.3) mRNA, complete cds Length = 1425 Score = 107 bits (54), Expect = 5e-20 Identities = 63/66 (95%) Strand = Plus / Minus Query: 586 gaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttctc 645 |||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||| Sbjct: 960 gaagatacccttgcagacaccgatacggtcttcacgggtcggggcccagtagaacttctc 901 Query: 646 catacg 651 |||||| Sbjct: 900 catacg 895
>gb|AC003000.3| Arabidopsis thaliana chromosome 2 clone T5I7 map CIC10A06, complete sequence Length = 92624 Score = 107 bits (54), Expect = 5e-20 Identities = 63/66 (95%) Strand = Plus / Plus Query: 586 gaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttctc 645 |||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||| Sbjct: 14154 gaagatacccttgcagacaccgatacggtcttcacgggtcggggcccagtagaacttctc 14213 Query: 646 catacg 651 |||||| Sbjct: 14214 catacg 14219
>gb|AY056108.1| Arabidopsis thaliana At2g39730/T5I7.3_ mRNA, complete cds Length = 1674 Score = 107 bits (54), Expect = 5e-20 Identities = 63/66 (95%) Strand = Plus / Minus Query: 586 gaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttctc 645 |||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||| Sbjct: 1048 gaagatacccttgcagacaccgatacggtcttcacgggtcggggcccagtagaacttctc 989 Query: 646 catacg 651 |||||| Sbjct: 988 catacg 983
>gb|AY052703.1| Arabidopsis thaliana At2g39730/T5I7.3 mRNA, complete cds Length = 1693 Score = 107 bits (54), Expect = 5e-20 Identities = 63/66 (95%) Strand = Plus / Minus Query: 586 gaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttctc 645 |||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||| Sbjct: 1037 gaagatacccttgcagacaccgatacggtcttcacgggtcggggcccagtagaacttctc 978 Query: 646 catacg 651 |||||| Sbjct: 977 catacg 972
>gb|AY052290.1| Arabidopsis thaliana At2g39730/T5I7.3 mRNA, complete cds Length = 1655 Score = 107 bits (54), Expect = 5e-20 Identities = 63/66 (95%) Strand = Plus / Minus Query: 586 gaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttctc 645 |||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||| Sbjct: 1045 gaagatacccttgcagacaccgatacggtcttcacgggtcggggcccagtagaacttctc 986 Query: 646 catacg 651 |||||| Sbjct: 985 catacg 980
>gb|AF325049.2|AF325049 Arabidopsis thaliana At2g39730 (At2g39730/T5I7.3) mRNA, complete cds Length = 1674 Score = 107 bits (54), Expect = 5e-20 Identities = 63/66 (95%) Strand = Plus / Minus Query: 586 gaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttctc 645 |||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||| Sbjct: 1048 gaagatacccttgcagacaccgatacggtcttcacgggtcggggcccagtagaacttctc 989 Query: 646 catacg 651 |||||| Sbjct: 988 catacg 983
>gb|AY088487.1| Arabidopsis thaliana clone 7114 mRNA, complete sequence Length = 1787 Score = 107 bits (54), Expect = 5e-20 Identities = 63/66 (95%) Strand = Plus / Minus Query: 586 gaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttctc 645 |||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||| Sbjct: 1163 gaagatacccttgcagacaccgatacggtcttcacgggtcggggcccagtagaacttctc 1104 Query: 646 catacg 651 |||||| Sbjct: 1103 catacg 1098
>gb|M86720.1|ATHRBCOALP Arabidopisis thaliana ribulose bisphosphate carboxylase/oxygenase activase (rca) gene, complete cds Length = 3974 Score = 107 bits (54), Expect = 5e-20 Identities = 63/66 (95%) Strand = Plus / Minus Query: 586 gaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttctc 645 |||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||| Sbjct: 3129 gaagatacccttgcagacaccgatacggtcttcacgggtcggggcccagtagaacttctc 3070 Query: 646 catacg 651 |||||| Sbjct: 3069 catacg 3064
>gb|DQ023668.1| Oryza sativa (indica cultivar-group) cultivar Tetep genomic sequence Length = 234 Score = 101 bits (51), Expect = 3e-18 Identities = 84/95 (88%) Strand = Plus / Minus Query: 118 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 177 |||||||||| | |||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 135 tgcttaaaagttttaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 76 Query: 178 ggcattttggtcggtgcaaccttccggcacgggca 212 |||| |||||| |||||||||||||| |||| Sbjct: 75 ggcaacagggtcgggtcaaccttccggcacaggca 41
>gb|AF305876.2| Zea mays ribulose 1,5-bisphosphate carboxylase/oxygenase activase precursor, mRNA, partial cds Length = 1336 Score = 97.6 bits (49), Expect = 4e-17 Identities = 142/173 (82%) Strand = Plus / Minus Query: 476 acctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatggattgtcctggg 535 ||||| |||||||| ||||| |||||||| || ||||| ||||| ||||| || || ||| Sbjct: 683 acctcgtcgtcgtagacccgggcacgcagcgcgccgaagaagtcgatggactggccaggg 624 Query: 536 aaggtgtcgacgatcttgacgacagactcgtcactgacattgtcggtctggaagataccc 595 ||||||||||| | || |||||| ||| || ||| |||||| ||||||| ||| Sbjct: 623 aaggtgtcgaccagctggacgacgtgctcctcgtcgacgccgtcggtgcggaagatgccc 564 Query: 596 ttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttctccat 648 |||||||| ||||| ||||| || |||||||| |||||||||||||||||||| Sbjct: 563 ttgcagacgccgatgcggtcctcgcgggtgggcgcccagtagaacttctccat 511 Score = 95.6 bits (48), Expect = 2e-16 Identities = 132/160 (82%) Strand = Plus / Minus Query: 240 agaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatgt 299 ||||||| ||||||||||| || |||| ||| || ||||| ||||| |||| | | | || Sbjct: 919 agaaggagccagtcttcatggcgtcctcgttggcttcaccaagagcagcctcgttgaggt 860 Query: 300 aggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgt 359 | ||||||||||||||||||||||||| || ||||||||| || |||||||| |||| Sbjct: 859 acttgtcagcaagctgcacacgcttgacgttctcctgctccgccaccagcatgtgtccgt 800 Query: 360 actctagcagcttctcgactgtcatctttggctgctcgaa 399 |||| | |||||||||| || ||||| ||||||||||| Sbjct: 799 actccaagagcttctcgatcgttatcttgggctgctcgaa 760
>gb|AF084478.3| Zea mays ribulose-1,5-bisphosphate carboxylase/oxygenase activase precursor (rca1) mRNA, complete cds Length = 1424 Score = 95.6 bits (48), Expect = 2e-16 Identities = 132/160 (82%) Strand = Plus / Minus Query: 240 agaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatgt 299 ||||||| ||||||||||| || |||| ||| || ||||| ||||| |||| | | | || Sbjct: 1314 agaaggagccagtcttcatggcgtcctcgttggcttcaccaagagcagcctcgttgaggt 1255 Query: 300 aggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgt 359 | ||||||||||||||||||||||||| || ||||||||| || |||||||| |||| Sbjct: 1254 acttgtcagcaagctgcacacgcttgacgttctcctgctccgccaccagcatgtgtccgt 1195 Query: 360 actctagcagcttctcgactgtcatctttggctgctcgaa 399 |||| | |||||||||| || ||||| ||||||||||| Sbjct: 1194 actccaagagcttctcgatcgttatcttgggctgctcgaa 1155 Score = 89.7 bits (45), Expect = 1e-14 Identities = 141/173 (81%) Strand = Plus / Minus Query: 476 acctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatggattgtcctggg 535 ||||| |||||||| ||||| |||||||| || ||||| || || ||||| || || ||| Sbjct: 1078 acctcgtcgtcgtagacccgggcacgcagcgcgccgaagaaatcgatggactggccaggg 1019 Query: 536 aaggtgtcgacgatcttgacgacagactcgtcactgacattgtcggtctggaagataccc 595 ||||||||||| | || |||||| ||| || ||| |||||| ||||||| ||| Sbjct: 1018 aaggtgtcgaccagctggacgacgtgctcctcgtcgacgccgtcggtgcggaagatgccc 959 Query: 596 ttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttctccat 648 |||||||| ||||| ||||| || |||||||| |||||||||||||||||||| Sbjct: 958 ttgcagacgccgatgcggtcctcgcgggtgggcgcccagtagaacttctccat 906
>gb|S45033.1| rubisco activase, ribulosebisphosphate carboxylase/oxygenase activase {alternatively spliced} [spinach, Genomic, 3691 nt] Length = 3691 Score = 95.6 bits (48), Expect = 2e-16 Identities = 54/56 (96%) Strand = Plus / Minus Query: 599 cagacaccgatacggtcgtcacgggtgggagcccagtagaacttctccatacgacc 654 |||||||| |||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 2813 cagacaccaatacggtcctcacgggtgggagcccagtagaacttctccatacgacc 2758
>gb|AY110044.1| Zea mays CL1146_1 mRNA sequence Length = 1750 Score = 95.6 bits (48), Expect = 2e-16 Identities = 132/160 (82%) Strand = Plus / Minus Query: 240 agaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatgt 299 ||||||| ||||||||||| || |||| ||| || ||||| ||||| |||| | | | || Sbjct: 1314 agaaggagccagtcttcatggcgtcctcgttggcttcaccaagagcagcctcgttgaggt 1255 Query: 300 aggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgt 359 | ||||||||||||||||||||||||| || ||||||||| || |||||||| |||| Sbjct: 1254 acttgtcagcaagctgcacacgcttgacgttctcctgctccgccaccagcatgtgtccgt 1195 Query: 360 actctagcagcttctcgactgtcatctttggctgctcgaa 399 |||| | |||||||||| || ||||| ||||||||||| Sbjct: 1194 actccaagagcttctcgatcgttatcttgggctgctcgaa 1155 Score = 79.8 bits (40), Expect = 1e-11 Identities = 58/64 (90%) Strand = Plus / Minus Query: 585 ggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttct 644 ||||||| ||||||||||| ||||| ||||| || |||||||| |||||||||||||||| Sbjct: 969 ggaagatgcccttgcagacgccgatgcggtcctcgcgggtgggcgcccagtagaacttct 910 Query: 645 ccat 648 |||| Sbjct: 909 ccat 906
>gb|J03610.1|SPIRBCO Spinach rubisco activase mRNA, complete cds Length = 1832 Score = 95.6 bits (48), Expect = 2e-16 Identities = 54/56 (96%) Strand = Plus / Minus Query: 599 cagacaccgatacggtcgtcacgggtgggagcccagtagaacttctccatacgacc 654 |||||||| |||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 1185 cagacaccaatacggtcctcacgggtgggagcccagtagaacttctccatacgacc 1130 Score = 44.1 bits (22), Expect = 0.57 Identities = 58/70 (82%) Strand = Plus / Minus Query: 479 tcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatggattgtcctgggaag 538 ||||||||||| || ||||| | || || ||||||||||| || |||||||| |||||| Sbjct: 1305 tcatcgtcgtatacacgagccctcaacgctccgaaaaagtcgatagattgtccagggaag 1246 Query: 539 gtgtcgacga 548 | ||| |||| Sbjct: 1245 gcgtcaacga 1236
>gb|DQ430613.1| Sorghum propinquum locus S10003 genomic sequence Length = 619 Score = 85.7 bits (43), Expect = 2e-13 Identities = 136/167 (81%) Strand = Plus / Minus Query: 482 tcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatggattgtcctgggaaggtg 541 |||||||||||||| || || || || ||||| ||||| ||||| || || ||||||| | Sbjct: 618 tcgtcgtacacccgggcgcggagggcgccgaagaagtcgatggactggcccgggaaggcg 559 Query: 542 tcgacgatcttgacgacagactcgtcactgacattgtcggtctggaagatacccttgcag 601 ||||||| || |||||| |||||| ||| |||||| ||||||| |||||||| Sbjct: 558 tcgacgagctggacgacgtgctcgtcggggacgccgtcggtgcggaagatgcccttgcac 499 Query: 602 acaccgatacggtcgtcacgggtgggagcccagtagaacttctccat 648 || ||||| |||||||| |||||||| |||||||||||||| ||||| Sbjct: 498 acgccgatgcggtcgtcgcgggtgggcgcccagtagaacttgtccat 452
>emb|X60093.1|BPNIR1 B.pendula mRNA for nitrite reductase Length = 2472 Score = 79.8 bits (40), Expect = 1e-11 Identities = 97/116 (83%) Strand = Plus / Minus Query: 257 atcgcatcctggttagcatcacccagagctgcctggctcatgtaggtgtcagcaagctgc 316 |||| ||||| ||| ||||| || |||||||| ||||||| ||| ||||| || || || Sbjct: 118 atcgaatcctcgtttgcatctccaagagctgcttggctcaagtacgtgtctgccagttga 59 Query: 317 acacgcttgacattgtcctgctcctggacgagcatgtgcccgtactctagcagctt 372 || | ||| |||||||||||||||||||| ||||||| || |||||||||||||| Sbjct: 58 actctcttcacattgtcctgctcctggacaagcatgtttccatactctagcagctt 3
>gb|AF173678.1|AF173678 Beta vulgaris clone RAC109UNI ribulose bisphosphate carboxylase activase (Rca) gene, partial sequence Length = 648 Score = 79.8 bits (40), Expect = 1e-11 Identities = 73/84 (86%) Strand = Plus / Minus Query: 571 gacattgtcggtctggaagatacccttgcagacaccgatacggtcgtcacgggtgggagc 630 ||||||||| ||| ||||||||| |||| ||||| |||||||| ||||| ||||| || Sbjct: 248 gacattgtcagtcctgaagataccagtgcaaacaccaatacggtcctcacgagtgggtgc 189 Query: 631 ccagtagaacttctccatacgacc 654 ||||||||| |||||||||||||| Sbjct: 188 ccagtagaatttctccatacgacc 165
>gb|AY312576.1| Larrea tridentata Rubisco activase beta form precursor (RCA2) mRNA, complete cds; nuclear gene for chloroplast product Length = 1694 Score = 77.8 bits (39), Expect = 4e-11 Identities = 72/83 (86%) Strand = Plus / Minus Query: 572 acattgtcggtctggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcc 631 |||||||| ||| ||| ||||||||||||||||| |||||||| || | ||| |||||| Sbjct: 1043 acattgtcagtcctgaaaatacccttgcagacaccaatacggtcttccctggtaggagcc 984 Query: 632 cagtagaacttctccatacgacc 654 |||||||| || ||||||||||| Sbjct: 983 cagtagaatttttccatacgacc 961 Score = 44.1 bits (22), Expect = 0.57 Identities = 43/50 (86%) Strand = Plus / Minus Query: 260 gcatcctggttagcatcacccagagctgcctggctcatgtaggtgtcagc 309 |||||||||||||||||||| || || |||| |||||||| ||||||| Sbjct: 1355 gcatcctggttagcatcaccaagggcagcctcactcatgtacttgtcagc 1306
>gb|DQ430604.1| Sorghum bicolor voucher NSL56174 locus S10003 genomic sequence Length = 627 Score = 77.8 bits (39), Expect = 4e-11 Identities = 135/167 (80%) Strand = Plus / Minus Query: 482 tcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatggattgtcctgggaaggtg 541 |||||||||||||| || || || || ||||| ||||| ||||| || || ||||||| | Sbjct: 626 tcgtcgtacacccgggcgcggagggcgccgaagaagtcgatggactggcccgggaaggcg 567 Query: 542 tcgacgatcttgacgacagactcgtcactgacattgtcggtctggaagatacccttgcag 601 ||||||| || |||||| |||||| ||| |||||| ||||||| |||||||| Sbjct: 566 tcgacgagctggacgacgtgctcgtcggggacgccgtcggtgcggaagatgcccttgcac 507 Query: 602 acaccgatacggtcgtcacgggtgggagcccagtagaacttctccat 648 || ||||| ||||| || |||||||| |||||||||||||| ||||| Sbjct: 506 acgccgatgcggtcctcccgggtgggcgcccagtagaacttgtccat 460
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 77.8 bits (39), Expect = 4e-11 Identities = 81/95 (85%) Strand = Plus / Minus Query: 118 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 177 |||||| ||||||||||||||| ||| ||||| |||| | ||||||||||| |||| || Sbjct: 4541413 tgcttagaaggtgtaaaggcagatgctgtcgttgctcatcgccgttgggtcaaagttgtt 4541354 Query: 178 ggcattttggtcggtgcaaccttccggcacgggca 212 |||| |||||||||||||||||||||| |||| Sbjct: 4541353 ggcaacagggtcggtgcaaccttccggcacaggca 4541319
>dbj|AP005592.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0638A12 Length = 140731 Score = 77.8 bits (39), Expect = 4e-11 Identities = 81/95 (85%) Strand = Plus / Minus Query: 118 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 177 |||||| ||||||||||||||| ||| ||||| |||| | ||||||||||| |||| || Sbjct: 84787 tgcttagaaggtgtaaaggcagatgctgtcgttgctcatcgccgttgggtcaaagttgtt 84728 Query: 178 ggcattttggtcggtgcaaccttccggcacgggca 212 |||| |||||||||||||||||||||| |||| Sbjct: 84727 ggcaacagggtcggtgcaaccttccggcacaggca 84693
>emb|Z21794.1|MDRBSCACA M.domestica ribulose-1,5-bisphosphate carboxylase/oxygenase activase mRNA Length = 1853 Score = 75.8 bits (38), Expect = 2e-10 Identities = 53/58 (91%) Strand = Plus / Minus Query: 597 tgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttctccatacgacc 654 ||||||| || ||||| || || ||||||||||||||||||||||||||||||||||| Sbjct: 1034 tgcagactccaatacgatcttcgcgggtgggagcccagtagaacttctccatacgacc 977 Score = 56.0 bits (28), Expect = 2e-04 Identities = 106/132 (80%) Strand = Plus / Minus Query: 268 gttagcatcacccagagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgac 327 |||||||||||| ||||| |||| ||||| ||| | ||||| | || || | ||| || Sbjct: 1363 gttagcatcaccaagagcagcctcgctcaagtacttatcagccaattgaactctcttcac 1304 Query: 328 attgtcctgctcctggacgagcatgtgcccgtactctagcagcttctcgactgtcatctt 387 ||| || ||||| ||||| ||||||| |||||||| || ||||| |||| |||||||| Sbjct: 1303 attctcttgctcttggacaagcatgtttccgtactcgaggagcttttcgatagtcatctt 1244 Query: 388 tggctgctcgaa 399 ||||||||||| Sbjct: 1243 cggctgctcgaa 1232 Score = 44.1 bits (22), Expect = 0.57 Identities = 64/78 (82%) Strand = Plus / Minus Query: 466 ccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatgga 525 |||||| | ||| ||||||||||| |||| ||| | || ||||| || || ||||| || Sbjct: 1165 ccacttcctcacttcatcgtcgtaaaccctagccctcaaggcaccaaagaaatcaataga 1106 Query: 526 ttgtcctgggaaggtgtc 543 ||| |||||||||||||| Sbjct: 1105 ttggcctgggaaggtgtc 1088
>gb|DQ430612.1| Sorghum bicolor voucher PI585454 locus S10003 genomic sequence Length = 637 Score = 71.9 bits (36), Expect = 3e-09 Identities = 57/64 (89%) Strand = Plus / Minus Query: 585 ggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttct 644 ||||||| |||||||| || ||||| |||||||| |||||||| |||||||||||||| | Sbjct: 533 ggaagatgcccttgcacacgccgatgcggtcgtcgcgggtgggcgcccagtagaacttgt 474 Query: 645 ccat 648 |||| Sbjct: 473 ccat 470
>gb|DQ430611.1| Sorghum bicolor voucher PI267539 locus S10003 genomic sequence Length = 633 Score = 71.9 bits (36), Expect = 3e-09 Identities = 57/64 (89%) Strand = Plus / Minus Query: 585 ggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttct 644 ||||||| |||||||| || ||||| |||||||| |||||||| |||||||||||||| | Sbjct: 529 ggaagatgcccttgcacacgccgatgcggtcgtcgcgggtgggcgcccagtagaacttgt 470 Query: 645 ccat 648 |||| Sbjct: 469 ccat 466
>gb|DQ430610.1| Sorghum bicolor voucher PI267408 locus S10003 genomic sequence Length = 635 Score = 71.9 bits (36), Expect = 3e-09 Identities = 57/64 (89%) Strand = Plus / Minus Query: 585 ggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttct 644 ||||||| |||||||| || ||||| |||||||| |||||||| |||||||||||||| | Sbjct: 531 ggaagatgcccttgcacacgccgatgcggtcgtcgcgggtgggcgcccagtagaacttgt 472 Query: 645 ccat 648 |||| Sbjct: 471 ccat 468
>gb|DQ430609.1| Sorghum bicolor voucher PI221607 locus S10003 genomic sequence Length = 635 Score = 71.9 bits (36), Expect = 3e-09 Identities = 57/64 (89%) Strand = Plus / Minus Query: 585 ggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttct 644 ||||||| |||||||| || ||||| |||||||| |||||||| |||||||||||||| | Sbjct: 531 ggaagatgcccttgcacacgccgatgcggtcgtcgcgggtgggcgcccagtagaacttgt 472 Query: 645 ccat 648 |||| Sbjct: 471 ccat 468
>gb|DQ430608.1| Sorghum bicolor voucher PI152702 locus S10003 genomic sequence Length = 639 Score = 71.9 bits (36), Expect = 3e-09 Identities = 57/64 (89%) Strand = Plus / Minus Query: 585 ggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttct 644 ||||||| |||||||| || ||||| |||||||| |||||||| |||||||||||||| | Sbjct: 535 ggaagatgcccttgcacacgccgatgcggtcgtcgcgggtgggcgcccagtagaacttgt 476 Query: 645 ccat 648 |||| Sbjct: 475 ccat 472
>gb|DQ430607.1| Sorghum bicolor voucher NSL92371 locus S10003 genomic sequence Length = 633 Score = 71.9 bits (36), Expect = 3e-09 Identities = 57/64 (89%) Strand = Plus / Minus Query: 585 ggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttct 644 ||||||| |||||||| || ||||| |||||||| |||||||| |||||||||||||| | Sbjct: 529 ggaagatgcccttgcacacgccgatgcggtcgtcgcgggtgggcgcccagtagaacttgt 470 Query: 645 ccat 648 |||| Sbjct: 469 ccat 466
>gb|DQ430606.1| Sorghum bicolor voucher NSL77217 locus S10003 genomic sequence Length = 635 Score = 71.9 bits (36), Expect = 3e-09 Identities = 57/64 (89%) Strand = Plus / Minus Query: 585 ggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttct 644 ||||||| |||||||| || ||||| |||||||| |||||||| |||||||||||||| | Sbjct: 531 ggaagatgcccttgcacacgccgatgcggtcgtcgcgggtgggcgcccagtagaacttgt 472 Query: 645 ccat 648 |||| Sbjct: 471 ccat 468
>gb|DQ430605.1| Sorghum bicolor voucher NSL77034 locus S10003 genomic sequence Length = 633 Score = 71.9 bits (36), Expect = 3e-09 Identities = 57/64 (89%) Strand = Plus / Minus Query: 585 ggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttct 644 ||||||| |||||||| || ||||| |||||||| |||||||| |||||||||||||| | Sbjct: 529 ggaagatgcccttgcacacgccgatgcggtcgtcgcgggtgggcgcccagtagaacttgt 470 Query: 645 ccat 648 |||| Sbjct: 469 ccat 466
>gb|DQ430603.1| Sorghum bicolor voucher NSL56003 locus S10003 genomic sequence Length = 635 Score = 71.9 bits (36), Expect = 3e-09 Identities = 57/64 (89%) Strand = Plus / Minus Query: 585 ggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttct 644 ||||||| |||||||| || ||||| |||||||| |||||||| |||||||||||||| | Sbjct: 531 ggaagatgcccttgcacacgccgatgcggtcgtcgcgggtgggcgcccagtagaacttgt 472 Query: 645 ccat 648 |||| Sbjct: 471 ccat 468
>gb|DQ430602.1| Sorghum bicolor voucher NSL55243 locus S10003 genomic sequence Length = 635 Score = 71.9 bits (36), Expect = 3e-09 Identities = 57/64 (89%) Strand = Plus / Minus Query: 585 ggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttct 644 ||||||| |||||||| || ||||| |||||||| |||||||| |||||||||||||| | Sbjct: 531 ggaagatgcccttgcacacgccgatgcggtcgtcgcgggtgggcgcccagtagaacttgt 472 Query: 645 ccat 648 |||| Sbjct: 471 ccat 468
>gb|DQ430601.1| Sorghum bicolor voucher NSL51365 locus S10003 genomic sequence Length = 635 Score = 71.9 bits (36), Expect = 3e-09 Identities = 57/64 (89%) Strand = Plus / Minus Query: 585 ggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttct 644 ||||||| |||||||| || ||||| |||||||| |||||||| |||||||||||||| | Sbjct: 531 ggaagatgcccttgcacacgccgatgcggtcgtcgcgggtgggcgcccagtagaacttgt 472 Query: 645 ccat 648 |||| Sbjct: 471 ccat 468
>gb|DQ430600.1| Sorghum bicolor voucher NSL51030 locus S10003 genomic sequence Length = 637 Score = 71.9 bits (36), Expect = 3e-09 Identities = 57/64 (89%) Strand = Plus / Minus Query: 585 ggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttct 644 ||||||| |||||||| || ||||| |||||||| |||||||| |||||||||||||| | Sbjct: 533 ggaagatgcccttgcacacgccgatgcggtcgtcgcgggtgggcgcccagtagaacttgt 474 Query: 645 ccat 648 |||| Sbjct: 473 ccat 470
>gb|DQ430599.1| Sorghum bicolor voucher NSL50875 locus S10003 genomic sequence Length = 635 Score = 71.9 bits (36), Expect = 3e-09 Identities = 57/64 (89%) Strand = Plus / Minus Query: 585 ggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttct 644 ||||||| |||||||| || ||||| |||||||| |||||||| |||||||||||||| | Sbjct: 531 ggaagatgcccttgcacacgccgatgcggtcgtcgcgggtgggcgcccagtagaacttgt 472 Query: 645 ccat 648 |||| Sbjct: 471 ccat 468
>gb|DQ430598.1| Sorghum bicolor voucher BTx623 locus S10003 genomic sequence Length = 639 Score = 71.9 bits (36), Expect = 3e-09 Identities = 57/64 (89%) Strand = Plus / Minus Query: 585 ggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttct 644 ||||||| |||||||| || ||||| |||||||| |||||||| |||||||||||||| | Sbjct: 535 ggaagatgcccttgcacacgccgatgcggtcgtcgcgggtgggcgcccagtagaacttgt 476 Query: 645 ccat 648 |||| Sbjct: 475 ccat 472
>emb|Z14981.1|NTRCATA1 N.tabacum Rca mRNA for ribulosebisphosphate carboxylase activase (pTA1.1) Length = 1011 Score = 71.9 bits (36), Expect = 3e-09 Identities = 144/180 (80%) Strand = Plus / Minus Query: 475 cacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatggattgtcctgg 534 ||||||||| ||||| || || || | ||||||||| || |||||||| |||||||| || Sbjct: 462 cacctcatcatcgtatactcgtgccctcagagcaccaaagaagtcaatagattgtccagg 403 Query: 535 gaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcggtctggaagatacc 594 |||||| ||||| ||||| || |||| || ||| || ||||||||| ||| ||||| Sbjct: 402 gaaggtatcgacaatctttacaacagcttcctcaggcacgttgtcggtcctgaaaatacc 343 Query: 595 cttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttctccatacgacc 654 |||||| ||||| || | || || | || || ||||| |||||||||||||||||||| Sbjct: 342 cttgcaaacaccaattctatcttccctagttggtgcccaatagaacttctccatacgacc 283
>gb|DQ124098.1| Coffea arabica clone MN-SSH2-F02 mRNA sequence Length = 253 Score = 67.9 bits (34), Expect = 4e-08 Identities = 52/58 (89%) Strand = Plus / Minus Query: 597 tgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttctccatacgacc 654 |||||||||| ||||| ||||| ||||| || ||||||||||| |||||||||||||| Sbjct: 143 tgcagacaccaatacgatcgtcgcgggttggtgcccagtagaatttctccatacgacc 86
>gb|AF329934.1|AF329934 Gossypium hirsutum ribulose-1,5-bisphosphate carboxylase/oxygenase activase 1 mRNA, complete cds Length = 1559 Score = 67.9 bits (34), Expect = 4e-08 Identities = 40/42 (95%) Strand = Plus / Minus Query: 502 cagagcaccgaaaaagtcaatggattgtcctgggaaggtgtc 543 ||||||||||||||||||||||||||| || ||||||||||| Sbjct: 1113 cagagcaccgaaaaagtcaatggattggcccgggaaggtgtc 1072 Score = 54.0 bits (27), Expect = 6e-04 Identities = 69/83 (83%) Strand = Plus / Minus Query: 572 acattgtcggtctggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcc 631 |||||||||||| ||| ||||| |||| |||||||| | || || | |||||| ||| Sbjct: 1043 acattgtcggtcctgaaaatacctgtgcaaacaccgatcctatcttccctggtgggtgcc 984 Query: 632 cagtagaacttctccatacgacc 654 ||||| ||||||||||||||||| Sbjct: 983 cagtaaaacttctccatacgacc 961
>gb|AF052424.1|AF052424 Datisca glomerata rubisco activase precursor, gene, partial cds Length = 1216 Score = 65.9 bits (33), Expect = 2e-07 Identities = 60/69 (86%) Strand = Plus / Minus Query: 586 gaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttctc 645 ||||||||| |||||||||| || ||||| || | |||||| ||||||||||| ||||| Sbjct: 872 gaagataccagtgcagacaccaattcggtcttctctggtgggcgcccagtagaatttctc 813 Query: 646 catacgacc 654 ||||||||| Sbjct: 812 catacgacc 804
>gb|AF047352.1|AF047352 Datisca glomerata rubisco activase precursor, mRNA, complete cds Length = 1634 Score = 65.9 bits (33), Expect = 2e-07 Identities = 60/69 (86%) Strand = Plus / Minus Query: 586 gaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttctc 645 ||||||||| |||||||||| || ||||| || | |||||| ||||||||||| ||||| Sbjct: 1045 gaagataccagtgcagacaccaattcggtcttctctggtgggcgcccagtagaatttctc 986 Query: 646 catacgacc 654 ||||||||| Sbjct: 985 catacgacc 977
>gb|AY312575.1| Larrea tridentata Rubisco activase alpha form precursor (RCA1) mRNA, complete cds; nuclear gene for chloroplast product Length = 1724 Score = 63.9 bits (32), Expect = 6e-07 Identities = 50/56 (89%) Strand = Plus / Minus Query: 596 ttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttctccatacg 651 ||||||||||| |||||||| || | |||||| ||||||||||| ||||||||||| Sbjct: 1019 ttgcagacaccaatacggtcctccctggtgggtgcccagtagaatttctccatacg 964 Score = 40.1 bits (20), Expect = 8.9 Identities = 68/84 (80%) Strand = Plus / Minus Query: 269 ttagcatcacccagagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgaca 328 ||||||||||| ||||| |||| | |||||| ||||||| | || || | |||||| Sbjct: 1346 ttagcatcaccaagagcagcctcggacatgtatttgtcagctaattgaactctcttgacg 1287 Query: 329 ttgtcctgctcctggacgagcatg 352 || |||||||||||||| |||||| Sbjct: 1286 ttctcctgctcctggacaagcatg 1263
>gb|BT012795.1| Lycopersicon esculentum clone 113794R, mRNA sequence Length = 1519 Score = 60.0 bits (30), Expect = 1e-05 Identities = 48/54 (88%) Strand = Plus / Minus Query: 502 cagagcaccgaaaaagtcaatggattgtcctgggaaggtgtcgacgatcttgac 555 |||||||||||| || ||||| |||||||| |||||| | |||||||||||||| Sbjct: 1126 cagagcaccgaagaaatcaatagattgtccagggaagctatcgacgatcttgac 1073 Score = 44.1 bits (22), Expect = 0.57 Identities = 25/26 (96%) Strand = Plus / Minus Query: 629 gcccagtagaacttctccatacgacc 654 ||||||||||| |||||||||||||| Sbjct: 999 gcccagtagaatttctccatacgacc 974
>gb|AY461703.1| Chlamydomonas reinhardtii rubisco activase (Rca) gene, complete cds Length = 4500 Score = 60.0 bits (30), Expect = 1e-05 Identities = 54/62 (87%) Strand = Plus / Minus Query: 482 tcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatggattgtcctgggaaggtg 541 ||||||||||| || |||||||| || ||||| ||||||||||| || || ||||||||| Sbjct: 2723 tcgtcgtacacgcgggcacgcagggcgccgaagaagtcaatggactggccggggaaggtg 2664 Query: 542 tc 543 || Sbjct: 2663 tc 2662
>gb|AY130300.1| Medicago sativa rubisco activase (Rca) mRNA, partial cds Length = 1063 Score = 60.0 bits (30), Expect = 1e-05 Identities = 51/58 (87%) Strand = Plus / Minus Query: 597 tgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttctccatacgacc 654 |||||||||| ||||| || || | || ||||||||||||||||||||||||||||| Sbjct: 456 tgcagacaccaatacgatcttctctagtaggagcccagtagaacttctccatacgacc 399 Score = 48.1 bits (24), Expect = 0.037 Identities = 75/92 (81%) Strand = Plus / Minus Query: 464 acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatg 523 |||||||| | ||| ||||| |||||||| | ||| | || |||||||| || || ||| Sbjct: 589 acccacttcctcacttcatcatcgtacactctagccctcaatgcaccgaagaaatcgatg 530 Query: 524 gattgtcctgggaaggtgtcgacgatcttgac 555 ||||| || ||||||||||| || |||||||| Sbjct: 529 gattggccagggaaggtgtcaacaatcttgac 498
>gb|AF329935.1|AF329935 Gossypium hirsutum ribulose-1,5-bisphosphate carboxylase/oxygenase activase 2 mRNA, partial cds Length = 1462 Score = 60.0 bits (30), Expect = 1e-05 Identities = 66/78 (84%) Strand = Plus / Minus Query: 577 gtcggtctggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagta 636 ||||||| ||| ||||| ||||| ||||||||||||||||| | || || |||||||| Sbjct: 853 gtcggtcctgaaaatacctttgcaaacaccgatacggtcgtccctagttggtgcccagta 794 Query: 637 gaacttctccatacgacc 654 || |||||||||||||| Sbjct: 793 aaatttctccatacgacc 776 Score = 48.1 bits (24), Expect = 0.037 Identities = 54/64 (84%) Strand = Plus / Minus Query: 485 tcgtacacccgagcacgcagagcaccgaaaaagtcaatggattgtcctgggaaggtgtcg 544 ||||| |||||||| | || |||||||| || || |||||||| || |||||||||||| Sbjct: 945 tcgtaaacccgagccctcaaggcaccgaagaaatcgatggattggccggggaaggtgtcg 886 Query: 545 acga 548 |||| Sbjct: 885 acga 882
>emb|Y10657.1|CLRCAGENE C.littorale rca gene Length = 2513 Score = 60.0 bits (30), Expect = 1e-05 Identities = 57/66 (86%) Strand = Plus / Minus Query: 583 ctggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaactt 642 ||||||||| ||| ||||||| ||||| ||||| ||||||||||| ||||||| |||| Sbjct: 1861 ctggaagattcccatgcagacgccgatgcggtcctcacgggtggggttccagtagtactt 1802 Query: 643 ctccat 648 |||||| Sbjct: 1801 ctccat 1796 Score = 42.1 bits (21), Expect = 2.3 Identities = 27/29 (93%) Strand = Plus / Minus Query: 311 agctgcacacgcttgacattgtcctgctc 339 |||||||| ||||||||||| |||||||| Sbjct: 2133 agctgcacgcgcttgacattctcctgctc 2105
>gb|M62962.1|CRERBCOA C.reinhardtii ribulose 1,5-bisphosphate carboxylase/oxygenase activase mRNA, complete cds Length = 1693 Score = 60.0 bits (30), Expect = 1e-05 Identities = 54/62 (87%) Strand = Plus / Minus Query: 482 tcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatggattgtcctgggaaggtg 541 ||||||||||| || |||||||| || ||||| ||||||||||| || || ||||||||| Sbjct: 1033 tcgtcgtacacgcgggcacgcagggcgccgaagaagtcaatggactggccggggaaggtg 974 Query: 542 tc 543 || Sbjct: 973 tc 972
>gb|AF041068.1|AF041068 Phaseolus vulgaris rubisco activase (Rca1) mRNA, complete cds Length = 1627 Score = 58.0 bits (29), Expect = 4e-05 Identities = 65/77 (84%) Strand = Plus / Minus Query: 578 tcggtctggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtag 637 |||||| |||| || |||||||| ||||| || ||||| || | || || ||||||||| Sbjct: 1042 tcggtccggaaaattcccttgcaaacaccaatgcggtcttcccttgttggtgcccagtag 983 Query: 638 aacttctccatacgacc 654 ||||||||||||||||| Sbjct: 982 aacttctccatacgacc 966
>emb|Z14980.1|NTRCAJQ4 N.tabacum Rca gene for ribulose bisphosphate carboxylase activase (pJQ4) Length = 1655 Score = 56.0 bits (28), Expect = 2e-04 Identities = 142/180 (78%) Strand = Plus / Minus Query: 475 cacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatggattgtcctgg 534 ||||||||| ||||| || || || | ||||||||| || |||||||| |||||||| || Sbjct: 1106 cacctcatcatcgtatactcgtgccctcagagcaccaaagaagtcaatagattgtccagg 1047 Query: 535 gaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcggtctggaagatacc 594 |||||| ||||| ||||| | || | || ||| || ||||||||| ||| ||||| Sbjct: 1046 gaaggtatcgacaatctttataacggcttcctcaggcacgttgtcggtcctgaaaatacc 987 Query: 595 cttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttctccatacgacc 654 |||||| ||||| || | || || | || || ||||| |||||||||||||||||||| Sbjct: 986 cttgcaaacaccaattctatcttccctagttggtgcccaatagaacttctccatacgacc 927
>gb|DQ233255.1| Gossypium hirsutum ribulose-1,5-bisphosphate carboxylase/oxygenase activase alpha 2 mRNA, complete cds Length = 1433 Score = 52.0 bits (26), Expect = 0.002 Identities = 65/78 (83%) Strand = Plus / Minus Query: 577 gtcggtctggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagta 636 ||||||| ||| ||||| ||||| ||||||| ||||||||| | || || |||||||| Sbjct: 852 gtcggtcctgaaaatacctttgcaaacaccgacacggtcgtccctagttggtgcccagta 793 Query: 637 gaacttctccatacgacc 654 || |||||||||||||| Sbjct: 792 aaatttctccatacgacc 775 Score = 48.1 bits (24), Expect = 0.037 Identities = 54/64 (84%) Strand = Plus / Minus Query: 485 tcgtacacccgagcacgcagagcaccgaaaaagtcaatggattgtcctgggaaggtgtcg 544 ||||| |||||||| | || |||||||| || || |||||||| || |||||||||||| Sbjct: 944 tcgtaaacccgagccctcaaggcaccgaagaaatcgatggattggccggggaaggtgtcg 885 Query: 545 acga 548 |||| Sbjct: 884 acga 881
>emb|Z14979.1|NTRCAJQ11 N.tabacum Rca gene for ribulose bisphosphate carboxyase activase (pJQ11) Length = 883 Score = 52.0 bits (26), Expect = 0.002 Identities = 26/26 (100%) Strand = Plus / Minus Query: 629 gcccagtagaacttctccatacgacc 654 |||||||||||||||||||||||||| Sbjct: 222 gcccagtagaacttctccatacgacc 197 Score = 44.1 bits (22), Expect = 0.57 Identities = 43/50 (86%) Strand = Plus / Minus Query: 506 gcaccgaaaaagtcaatggattgtcctgggaaggtgtcgacgatcttgac 555 |||||||||||||| || |||||||| |||||| | || || |||||||| Sbjct: 345 gcaccgaaaaagtcgatagattgtccagggaagttatcaacaatcttgac 296
>emb|X67674.1|CSRUBAC C.sativus mRNA for rubisco activase Length = 2031 Score = 52.0 bits (26), Expect = 0.002 Identities = 68/82 (82%) Strand = Plus / Minus Query: 465 cccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatgg 524 ||||||| | ||| |||||||| || || ||||| | || |||||| || ||||| || | Sbjct: 1161 cccactttctcacttcatcgtcataaactcgagctctcaaagcaccaaagaagtctattg 1102 Query: 525 attgtcctgggaaggtgtcgac 546 | |||||||||||||||||||| Sbjct: 1101 actgtcctgggaaggtgtcgac 1080
>gb|AF037361.1|AF037361 Lycopersicon pennellii rubisco activase mRNA, complete cds Length = 1656 Score = 52.0 bits (26), Expect = 0.002 Identities = 26/26 (100%) Strand = Plus / Minus Query: 629 gcccagtagaacttctccatacgacc 654 |||||||||||||||||||||||||| Sbjct: 963 gcccagtagaacttctccatacgacc 938
>gb|U35111.1|NTU35111 Nicotiana tabacum rubisco activase precursor (Rca) mRNA, complete cds Length = 1674 Score = 52.0 bits (26), Expect = 0.002 Identities = 26/26 (100%) Strand = Plus / Minus Query: 629 gcccagtagaacttctccatacgacc 654 |||||||||||||||||||||||||| Sbjct: 982 gcccagtagaacttctccatacgacc 957
>gb|AF114155.1|AF114155 Artemisia annua ribulose-1,5-bisphosphate carboxylase/oxygenase activase pseudogene, partial sequence Length = 472 Score = 50.1 bits (25), Expect = 0.009 Identities = 28/29 (96%) Strand = Plus / Minus Query: 626 ggagcccagtagaacttctccatacgacc 654 ||||||||||||||||| ||||||||||| Sbjct: 419 ggagcccagtagaacttttccatacgacc 391
>gb|AF126870.2|AF126870 Vigna radiata rubisco activase (Rca) mRNA, complete cds; nuclear gene for chloroplast product Length = 1671 Score = 46.1 bits (23), Expect = 0.14 Identities = 23/23 (100%) Strand = Plus / Minus Query: 629 gcccagtagaacttctccatacg 651 ||||||||||||||||||||||| Sbjct: 995 gcccagtagaacttctccatacg 973
>gb|AC114810.4| Homo sapiens BAC clone RP11-1293J14 from 2, complete sequence Length = 119249 Score = 44.1 bits (22), Expect = 0.57 Identities = 22/22 (100%) Strand = Plus / Minus Query: 273 catcacccagagctgcctggct 294 |||||||||||||||||||||| Sbjct: 51275 catcacccagagctgcctggct 51254
>emb|X14212.1|ATRCA Arabidopsis thaliana mRNA for rubisco activase Length = 1652 Score = 44.1 bits (22), Expect = 0.57 Identities = 25/26 (96%) Strand = Plus / Minus Query: 599 cagacaccgatacggtcgtcacgggt 624 ||||||||||||||||| |||||||| Sbjct: 1016 cagacaccgatacggtcttcacgggt 991
>emb|BX000451.4| Zebrafish DNA sequence from clone CH211-30E10, complete sequence Length = 153155 Score = 44.1 bits (22), Expect = 0.57 Identities = 22/22 (100%) Strand = Plus / Plus Query: 23 aatatatttagagatatattaa 44 |||||||||||||||||||||| Sbjct: 67942 aatatatttagagatatattaa 67963
>gb|AC138278.9| Mus musculus chromosome 8, clone RP23-378E4, complete sequence Length = 177245 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 25 tatatttagagatatattaac 45 ||||||||||||||||||||| Sbjct: 12315 tatatttagagatatattaac 12335
>emb|BX572599.1| Rhodopseudomonas palustris CGA009 complete genome; segment 7/16 Length = 349142 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 533 gggaaggtgtcgacgatcttg 553 ||||||||||||||||||||| Sbjct: 3653 gggaaggtgtcgacgatcttg 3673
>gb|AC161354.2| Mus musculus chromosome 8, clone RP23-373C4, complete sequence Length = 98660 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 25 tatatttagagatatattaac 45 ||||||||||||||||||||| Sbjct: 66387 tatatttagagatatattaac 66367
>emb|AJ271896.1|PHA271896 Pinus halepensis partial mRNA for rubisco activase (rca gene) Length = 678 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 631 ccagtagaacttctccatacg 651 ||||||||||||||||||||| Sbjct: 678 ccagtagaacttctccatacg 658
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 94 aaacatcagatattaaaagtg 114 ||||||||||||||||||||| Sbjct: 3040440 aaacatcagatattaaaagtg 3040420
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 94 aaacatcagatattaaaagtg 114 ||||||||||||||||||||| Sbjct: 3040385 aaacatcagatattaaaagtg 3040365
>emb|AL731748.3|CNS08C7X Oryza sativa chromosome 12, . BAC OSJNBa0095K18 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 159711 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 94 aaacatcagatattaaaagtg 114 ||||||||||||||||||||| Sbjct: 114403 aaacatcagatattaaaagtg 114423
>gb|AC164586.7| Mus musculus chromosome 8, clone RP24-258B3, complete sequence Length = 105452 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 25 tatatttagagatatattaac 45 ||||||||||||||||||||| Sbjct: 6217 tatatttagagatatattaac 6197
>gb|AC002511.1| Homo sapiens chromosome 19 clone PC28130, complete sequence Length = 98713 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 583 ctggaagatacccttgcagacacc 606 ||||| |||||||||||||||||| Sbjct: 67288 ctggatgatacccttgcagacacc 67265
>gb|U60105.1| Bos taurus large conductance calcium-activated potassium channel alpha subunit mRNA, partial cds Length = 3448 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 273 catcacccagagctgcctggctca 296 |||| ||||||||||||||||||| Sbjct: 1542 catcgcccagagctgcctggctca 1565
>ref|XM_751239.1| Ustilago maydis 521 hypothetical protein (UM00185.1) partial mRNA Length = 531 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 304 gtcagcaagctgcacacgct 323 |||||||||||||||||||| Sbjct: 242 gtcagcaagctgcacacgct 223
>emb|Z73941.1|LJRAB7B L.japonicus mRNA for small GTP-binding protein, RAB7B Length = 1010 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 551 ttgacgacagactcgtcact 570 |||||||||||||||||||| Sbjct: 289 ttgacgacagactcgtcact 308
>gb|AC019210.7| Homo sapiens BAC clone RP11-449G3 from 7, complete sequence Length = 177402 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 99 tcagatattaaaagtggcat 118 |||||||||||||||||||| Sbjct: 141058 tcagatattaaaagtggcat 141077
>gb|AC011228.9| Homo sapiens BAC clone GS1-18A18 from 7, complete sequence Length = 163782 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 99 tcagatattaaaagtggcat 118 |||||||||||||||||||| Sbjct: 142564 tcagatattaaaagtggcat 142583
>gb|AC140953.1| Pan troglodytes BAC clone RP43-37K18 from 7, complete sequence Length = 204813 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 99 tcagatattaaaagtggcat 118 |||||||||||||||||||| Sbjct: 95930 tcagatattaaaagtggcat 95911
>gb|AF026000.2| Sus scrofa calcium-activated potassium channel alpha subunit mRNA, complete cds Length = 3459 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 273 catcacccagagctgcctggctca 296 |||| ||||||||||||||||||| Sbjct: 1596 catcgcccagagctgcctggctca 1619
>gb|AC139338.3| Homo sapiens 3 BAC RP11-449O23 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 166149 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 23 aatatatttagagatatatt 42 |||||||||||||||||||| Sbjct: 30454 aatatatttagagatatatt 30473
>gb|AC161351.3| Mus musculus chromosome 15, clone RP24-142I15, complete sequence Length = 161308 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 323 ttgacattgtcctgctcctg 342 |||||||||||||||||||| Sbjct: 126438 ttgacattgtcctgctcctg 126419
>ref|NM_174680.2| Bos taurus potassium large conductance calcium-activated channel, subfamily M, alpha member 1 (KCNMA1), mRNA Length = 6183 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 273 catcacccagagctgcctggctca 296 |||| ||||||||||||||||||| Sbjct: 1912 catcgcccagagctgcctggctca 1935
>gb|AE011750.1| Xanthomonas axonopodis pv. citri str. 306, section 128 of 469 of the complete genome Length = 11388 Score = 40.1 bits (20), Expect = 8.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 127 ggtgtaaaggcagctgccgtcgtcgctc 154 |||||| |||| |||||||||||||||| Sbjct: 5160 ggtgtacaggctgctgccgtcgtcgctc 5133
>dbj|AP007170.1| Aspergillus oryzae RIB40 genomic DNA, SC138 Length = 504369 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 47 aaacatgcccagcaatcgcttgga 70 |||||||||||||||||| ||||| Sbjct: 41692 aaacatgcccagcaatcgattgga 41715
>gb|AY033474.1| Bos taurus BK potassium ion channel isoform C mRNA, partial cds, alternatively spliced Length = 3430 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 273 catcacccagagctgcctggctca 296 |||| ||||||||||||||||||| Sbjct: 1636 catcgcccagagctgcctggctca 1659
>gb|AY033473.1| Bos taurus BK potassium ion channel isoform B mRNA, complete cds, alternatively spliced Length = 4490 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 273 catcacccagagctgcctggctca 296 |||| ||||||||||||||||||| Sbjct: 2003 catcgcccagagctgcctggctca 2026
>gb|AY033472.1| Bos taurus BK potassium ion channel isoform A mRNA, complete cds, alternatively spliced Length = 6183 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 273 catcacccagagctgcctggctca 296 |||| ||||||||||||||||||| Sbjct: 1912 catcgcccagagctgcctggctca 1935
>emb|BX000985.18| Zebrafish DNA sequence from clone DKEY-13M3 in linkage group 15, complete sequence Length = 134752 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 113 tggcatgcttaaaaggtgta 132 |||||||||||||||||||| Sbjct: 78235 tggcatgcttaaaaggtgta 78254
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 602 acaccgatacggtcgtcacg 621 |||||||||||||||||||| Sbjct: 3056308 acaccgatacggtcgtcacg 3056327
>gb|AC102845.9| Mus musculus chromosome 15, clone RP24-389O7, complete sequence Length = 125424 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 323 ttgacattgtcctgctcctg 342 |||||||||||||||||||| Sbjct: 106960 ttgacattgtcctgctcctg 106979
>ref|NM_214219.1| Sus scrofa calcium-activated potassium channel alpha subunit (KCNMA1), mRNA Length = 3459 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 273 catcacccagagctgcctggctca 296 |||| ||||||||||||||||||| Sbjct: 1596 catcgcccagagctgcctggctca 1619
>gb|AC007625.2|AC007625 Genomic sequence of Homo sapiens clone 2314F2 from chromosome 18, complete sequence Length = 174701 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 23 aatatatttagagatatatt 42 |||||||||||||||||||| Sbjct: 62504 aatatatttagagatatatt 62485
>gb|AC091764.35| Mus musculus strain C57BL/6J chromosome 10 clone rp23-202b12, complete sequence Length = 230848 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 98 atcagatattaaaagtggcatgct 121 ||||||||||||||||| |||||| Sbjct: 127875 atcagatattaaaagtgccatgct 127852 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,165,131 Number of Sequences: 3902068 Number of extensions: 4165131 Number of successful extensions: 75485 Number of sequences better than 10.0: 124 Number of HSP's better than 10.0 without gapping: 124 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 75002 Number of HSP's gapped (non-prelim): 422 length of query: 654 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 631 effective length of database: 17,143,297,704 effective search space: 10817420851224 effective search space used: 10817420851224 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
