ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal34b05 |
|---|---|
| Clone Library Name | barley_pub |
>PPA5_MOUSE (Q05117) Tartrate-resistant acid phosphatase type 5 precursor (EC| 3.1.3.2) (TR-AP) (Tartrate-resistant acid ATPase) (TrATPase) (Acid phosphatase 5, tartrate resistant) Length = 327 Score = 48.5 bits (114), Expect = 2e-05 Identities = 34/130 (26%), Positives = 62/130 (47%), Gaps = 11/130 (8%) Frame = -1 Query: 515 MKKSTAKWK----IAVGHHTMRSVSDHGDTEEXXXXXXXXLKVNGIDFYINGHDHCLEHI 348 +KK A K + GH+ + S+++HG T L G+ Y+ GHDH L+++ Sbjct: 190 LKKQLAAAKEDYVLVAGHYPIWSIAEHGPTRCLVKNLRPLLATYGVTAYLCGHDHNLQYL 249 Query: 347 SSRNSPIQYFTSGGGS---KAWRGVYQPNDDKLQFFYDGQ----GFMSLQLNKDQADFIF 189 N + Y SG G+ + R + + L+F Y + GF ++++ + I+ Sbjct: 250 QDENG-VGYVLSGAGNFMDPSVRHQRKVPNGYLRFHYGSEDSLGGFTHVEISPKEMTIIY 308 Query: 188 YDVSGKVLYE 159 + SGK L++ Sbjct: 309 VEASGKSLFK 318
>PPA5_RAT (P29288) Tartrate-resistant acid phosphatase type 5 precursor (EC| 3.1.3.2) (TR-AP) (Tartrate-resistant acid ATPase) (TrATPase) (Acid phosphatase 5, tartrate resistant) Length = 327 Score = 46.6 bits (109), Expect = 7e-05 Identities = 33/130 (25%), Positives = 60/130 (46%), Gaps = 11/130 (8%) Frame = -1 Query: 515 MKKSTAKWK----IAVGHHTMRSVSDHGDTEEXXXXXXXXLKVNGIDFYINGHDHCLEHI 348 +KK A K + GH+ + S+++HG T L G+ Y+ GHDH L+++ Sbjct: 190 LKKQLAAAKEDYVLVAGHYPIWSIAEHGPTRCLVKNLRPLLAAYGVTAYLCGHDHNLQYL 249 Query: 347 SSRNSPIQYFTSGGGS---KAWRGVYQPNDDKLQFFYDGQ----GFMSLQLNKDQADFIF 189 N + Y SG G+ + R + + L+F Y + GF +++ + + Sbjct: 250 QDENG-VGYVLSGAGNFMDPSVRHQRKVPNGYLRFHYGSEDSLGGFTYVEIGSKEMSITY 308 Query: 188 YDVSGKVLYE 159 + SGK L++ Sbjct: 309 VEASGKSLFK 318
>PPA5_HUMAN (P13686) Tartrate-resistant acid phosphatase type 5 precursor (EC| 3.1.3.2) (TR-AP) (Tartrate-resistant acid ATPase) (TrATPase) (Acid phosphatase 5, tartrate resistant) Length = 325 Score = 45.4 bits (106), Expect = 2e-04 Identities = 30/130 (23%), Positives = 61/130 (46%), Gaps = 7/130 (5%) Frame = -1 Query: 527 LDEAMKKSTAKWKIAVGHHTMRSVSDHGDTEEXXXXXXXXLKVNGIDFYINGHDHCLEHI 348 L + + + + + GH+ + S+++HG T L G+ Y+ GHDH L+++ Sbjct: 188 LKKQLAAAREDYVLVAGHYPVWSIAEHGPTHCLVKQLRPLLATYGVTAYLCGHDHNLQYL 247 Query: 347 SSRNSPIQYFTSGGGS---KAWRGVYQPNDDKLQFFYDGQ----GFMSLQLNKDQADFIF 189 N + Y SG G+ + R + + L+F Y + GF ++++ + + Sbjct: 248 QDENG-VGYVLSGAGNFMDPSKRHQRKVPNGYLRFHYGTEDSLGGFAYVEISSKEMTVTY 306 Query: 188 YDVSGKVLYE 159 + SGK L++ Sbjct: 307 IEASGKSLFK 316
>PPA5_RABIT (O97860) Tartrate-resistant acid phosphatase type 5 precursor (EC| 3.1.3.2) (TR-AP) (Tartrate-resistant acid ATPase) (TrATPase) (Acid phosphatase 5, tartrate resistant) Length = 325 Score = 43.9 bits (102), Expect = 5e-04 Identities = 33/120 (27%), Positives = 56/120 (46%), Gaps = 10/120 (8%) Frame = -1 Query: 488 IAVGHHTMRSVSDHGDTEEXXXXXXXXLKVNGIDFYINGHDHCLEHISSRNSPIQYFTSG 309 + GH+ + S+++HG T L G+ Y+ GHDH L+++ N + Y SG Sbjct: 201 LVAGHYPVWSIAEHGPTHCLVKKLQPLLVKYGVTAYLCGHDHNLQYLQDENG-VGYVLSG 259 Query: 308 GG------SKAWRGVYQPNDDKLQFFYDGQ----GFMSLQLNKDQADFIFYDVSGKVLYE 159 G ++ R V PN L+F Y + GF L++ + + + SGK L++ Sbjct: 260 AGNFMDPSTQHQRSV--PN-GYLRFHYGAENSLGGFAYLEITPKEMTVTYMEASGKSLFK 316
>PPA5_PIG (P09889) Tartrate-resistant acid phosphatase type 5 precursor (EC| 3.1.3.2) (TR-AP) (Tartrate-resistant acid ATPase) (TrATPase) (Acid phosphatase 5, tartrate resistant) (Uteroferrin) (UF) Length = 340 Score = 41.2 bits (95), Expect = 0.003 Identities = 31/146 (21%), Positives = 68/146 (46%), Gaps = 7/146 (4%) Frame = -1 Query: 575 RGVAPRKNYIANLLKDLDEAMKKSTAKWKIAVGHHTMRSVSDHGDTEEXXXXXXXXLKVN 396 R +A + +A + K L A + + + GH+ + S+++HG T L + Sbjct: 184 RNLALARTQLAWIKKQLAAAKED----YVLVAGHYPVWSIAEHGPTHCLVKQLLPLLTTH 239 Query: 395 GIDFYINGHDHCLEHISSRNSPIQYFTSGGGS---KAWRGVYQPNDDKLQFFYDGQ---- 237 + Y+ GHDH L+++ N + + SG G+ + + + + + L+F + + Sbjct: 240 KVTAYLCGHDHNLQYLQDENG-LGFVLSGAGNFMDPSKKHLRKVPNGYLRFHFGAENSLG 298 Query: 236 GFMSLQLNKDQADFIFYDVSGKVLYE 159 GF +++ + + + SGK L++ Sbjct: 299 GFAYVEITPKEMSVTYIEASGKSLFK 324
>AGO1_SCHPO (O74957) Cell cycle control protein ago1 (RNA interference pathway| protein ago1) Length = 834 Score = 31.2 bits (69), Expect = 3.1 Identities = 18/53 (33%), Positives = 27/53 (50%) Frame = -1 Query: 311 GGGSKAWRGVYQPNDDKLQFFYDGQGFMSLQLNKDQADFIFYDVSGKVLYEWT 153 GGG +AW+G YQ QGFMS+ ++ + F D ++L E+T Sbjct: 174 GGGVEAWKGFYQS-------IRPNQGFMSVNVDISSSAFWRNDSLLQILMEYT 219
>RPOC_PSEF5 (Q4K527) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1399 Score = 30.0 bits (66), Expect = 6.8 Identities = 16/45 (35%), Positives = 27/45 (60%) Frame = +3 Query: 303 TASTSEVLDWTVSAANVFQAVVMPIDVEVDAVNLEDRKKQLQELL 437 + S + ++D TV A +FQ V+P + D VNL +KK + +L+ Sbjct: 563 SVSATRIVDTTVGRALLFQ--VVPKGLSFDVVNLPMKKKAISKLI 605 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 99,997,220 Number of Sequences: 219361 Number of extensions: 2169705 Number of successful extensions: 5558 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 5383 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5554 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6712189044 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
