ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal34a11 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_470012.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1912 Score = 262 bits (132), Expect = 1e-66 Identities = 237/272 (87%) Strand = Plus / Minus Query: 82 tcacttgtaggcatggacgtaatcctggaaatagaagttcttctcgatgaagctggcgag 141 ||||||||| ||||||||||| |||||||||||||||||||||||||||||| ||||||| Sbjct: 1670 tcacttgtaagcatggacgtagtcctggaaatagaagttcttctcgatgaagttggcgag 1611 Query: 142 ccagcgggacgcggcgaagcacagcaccgccaatgtcacgacggcggctctctgcacgac 201 ||||||||| ||||||||||||||||| ||| | ||||||||||| ||||||||| || Sbjct: 1610 ccagcgggaggcggcgaagcacagcacggccgcagccacgacggcggatctctgcacaac 1551 Query: 202 cgacgtcactagtgtccccttggcgaccgcaaggaaaccgacgaccgccaccgacgcgac 261 |||||| || | |||||||||||||| || ||||| |||||||| || |||||||| || Sbjct: 1550 cgacgtgaccaccgtccccttggcgacggcgaggaacccgacgacggcgaccgacgccac 1491 Query: 262 ctgcagggcaacctccagcgctttcatggtcttcagcgccgtgctgcagctcctgcactg 321 ||||||||| ||||||||||| ||||| ||||||| || |||||||||| ||||||| Sbjct: 1490 ctgcagggcgacctccagcgccttcatcttcttcagtgcaccgctgcagctcgtgcactg 1431 Query: 322 cgcgacgtgcgaccagtacctctccatgagct 353 | |||||||||||| ||||| |||| ||||| Sbjct: 1430 catgacgtgcgaccaatacctgtccaagagct 1399 Score = 147 bits (74), Expect = 5e-32 Identities = 188/226 (83%) Strand = Plus / Minus Query: 398 gcccagccgacctgactcttgcagtgctttctgaaccagttcctgaaggcgatcaccatg 457 |||||||| | |||| |||||||| ||||||||||||||| ||||||| ||| | |||| Sbjct: 1354 gcccagccaatctgatgcttgcagtactttctgaaccagtttctgaaggtgatgatcatg 1295 Query: 458 ttgtccgacgacgtcggcacgtacacggctttctgccagttttcgacgcccgccgcagcg 517 ||||| || || || ||||| || |||||||||||||| || | || ||| |||| Sbjct: 1294 ttgtcagatgatgtgggcacatagcaagctttctgccagttatcaagaccaaccgtagcg 1235 Query: 518 aagttgcgctcctcgatgtggaggaggtagatgtctgagtccaggatagcgttctggccg 577 || ||||||||||| |||||||| |||||||||||||| |||| ||| || ||||| || Sbjct: 1234 aaattgcgctcctcaatgtggagcaggtagatgtctgaatccaagatggcattctgccca 1175 Query: 578 atgtggtagtaccaccgcggtatgaccttgtcgagccagacgccga 623 ||||||||||||||||| ||||||| |||||| | ||||||||||| Sbjct: 1174 atgtggtagtaccaccgtggtatgatcttgtccatccagacgccga 1129
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 256 bits (129), Expect = 8e-65 Identities = 228/261 (87%) Strand = Plus / Minus Query: 82 tcacttgtaggcatggacgtaatcctggaaatagaagttcttctcgatgaagctggcgag 141 ||||||||| ||||||||||| |||||||||||||||||||||||||||||| ||||||| Sbjct: 33336982 tcacttgtaagcatggacgtagtcctggaaatagaagttcttctcgatgaagttggcgag 33336923 Query: 142 ccagcgggacgcggcgaagcacagcaccgccaatgtcacgacggcggctctctgcacgac 201 ||||||||| ||||||||||||||||| ||| | ||||||||||| ||||||||| || Sbjct: 33336922 ccagcgggaggcggcgaagcacagcacggccgcagccacgacggcggatctctgcacaac 33336863 Query: 202 cgacgtcactagtgtccccttggcgaccgcaaggaaaccgacgaccgccaccgacgcgac 261 |||||| || | |||||||||||||| || ||||| |||||||| || |||||||| || Sbjct: 33336862 cgacgtgaccaccgtccccttggcgacggcgaggaacccgacgacggcgaccgacgccac 33336803 Query: 262 ctgcagggcaacctccagcgctttcatggtcttcagcgccgtgctgcagctcctgcactg 321 ||||||||| ||||||||||| ||||| ||||||| || |||||||||| ||||||| Sbjct: 33336802 ctgcagggcgacctccagcgccttcatcttcttcagtgcaccgctgcagctcgtgcactg 33336743 Query: 322 cgcgacgtgcgaccagtacct 342 | |||||||||||| ||||| Sbjct: 33336742 catgacgtgcgaccaatacct 33336722 Score = 184 bits (93), Expect = 2e-43 Identities = 219/261 (83%) Strand = Plus / Minus Query: 82 tcacttgtaggcatggacgtaatcctggaaatagaagttcttctcgatgaagctggcgag 141 ||||||||| ||||||||||| |||||||| |||||| ||||||| |||||||| ||||| Sbjct: 33349831 tcacttgtaagcatggacgtagtcctggaagtagaagctcttctcaatgaagctcgcgag 33349772 Query: 142 ccagcgggacgcggcgaagcacagcaccgccaatgtcacgacggcggctctctgcacgac 201 ||||||||| ||||||||||||||||| || | |||| ||||||||| | | || || Sbjct: 33349771 ccagcgggaggcggcgaagcacagcacggcggtagacacggcggcggctcgccggacaac 33349712 Query: 202 cgacgtcactagtgtccccttggcgaccgcaaggaaaccgacgaccgccaccgacgcgac 261 ||||| |||| ||||||||||||| || ||||| ||||||| || |||||||| || Sbjct: 33349711 cgacggtgctagactccccttggcgacggcgaggaatccgacgatggcgaccgacgccac 33349652 Query: 262 ctgcagggcaacctccagcgctttcatggtcttcagcgccgtgctgcagctcctgcactg 321 ||||||||| ||||||||||| ||||| ||||||| || | |||||||||| ||||||| Sbjct: 33349651 ctgcagggcgacctccagcgccttcatcttcttcagtgcagcgctgcagctcgtgcactg 33349592 Query: 322 cgcgacgtgcgaccagtacct 342 | ||| ||||||| |||||| Sbjct: 33349591 catgacatgcgacctgtacct 33349571 Score = 180 bits (91), Expect = 4e-42 Identities = 202/239 (84%) Strand = Plus / Minus Query: 104 tcctggaaatagaagttcttctcgatgaagctggcgagccagcgggacgcggcgaagcac 163 |||| |||||||||| ||||||||||||||| ||||||||||||||| |||||||||||| Sbjct: 33358008 tcctcgaaatagaaggtcttctcgatgaagccggcgagccagcgggaggcggcgaagcac 33357949 Query: 164 agcaccgccaatgtcacgacggcggctctctgcacgaccgacgtcactagtgtccccttg 223 ||||||||| | |||||||||||||||||| || ||||||| || | ||||||||| Sbjct: 33357948 agcaccgccgcagccacgacggcggctctctgaacacccgacgtgaccaccgtccccttg 33357889 Query: 224 gcgaccgcaaggaaaccgacgaccgccaccgacgcgacctgcagggcaacctccagcgct 283 || | || ||||| |||||||| || ||||| || ||||||||||| |||||||| ||| Sbjct: 33357888 ccggcggcgaggaacccgacgacggcgaccgaagccacctgcagggcgacctccagagct 33357829 Query: 284 ttcatggtcttcagcgccgtgctgcagctcctgcactgcgcgacgtgcgaccagtacct 342 |||| |||||| || | |||||||||| |||||||| ||| |||||||||||||| Sbjct: 33357828 ctcatccacttcagtgcagcgctgcagctcgtgcactgcatgacatgcgaccagtacct 33357770 Score = 129 bits (65), Expect = 1e-26 Identities = 216/264 (81%), Gaps = 3/264 (1%) Strand = Plus / Minus Query: 82 tcacttgtaggcatggacgtaatcctggaaatagaagttcttctcgatgaagctggcgag 141 ||||||||| |||||||| || |||||||| |||||| | |||||||||||| ||||||| Sbjct: 33343595 tcacttgtaagcatggacatagtcctggaagtagaagcttttctcgatgaagttggcgag 33343536 Query: 142 ccagcgggacgcggcgaagcacagcaccgccaatgtcacgacggcggctctctgcacgac 201 ||||||||| || |||||||||||| | ||| | |||||||||||||||||| || | Sbjct: 33343535 ccagcgggaggcagcgaagcacagcgcggccgcagccacgacggcggctctctgaaccgc 33343476 Query: 202 cgacgtcacta--gt-gtccccttggcgaccgcaaggaaaccgacgaccgccaccgacgc 258 |||||| || | || ||||||||| || | || ||||| |||||||| || |||||||| Sbjct: 33343475 cgacgtgaccaccgtcgtccccttgccggcggcgaggaacccgacgacggcgaccgacgc 33343416 Query: 259 gacctgcagggcaacctccagcgctttcatggtcttcagcgccgtgctgcagctcctgca 318 |||||||| || ||||||| ||| |||| |||||| || | ||||||||| |||| Sbjct: 33343415 cacctgcagtgcgacctccatcgccctcatccacttcagtgcagcgctgcagctggtgca 33343356 Query: 319 ctgcgcgacgtgcgaccagtacct 342 |||| ||| || ||||||||||| Sbjct: 33343355 ctgcatgacatgtgaccagtacct 33343332 Score = 107 bits (54), Expect = 4e-20 Identities = 66/70 (94%) Strand = Plus / Minus Query: 92 gcatggacgtaatcctggaaatagaagttcttctcgatgaagctggcgagccagcgggac 151 |||||||| |||||||||||||||||| |||||||||||||| |||||||||||||||| Sbjct: 33383523 gcatggacataatcctggaaatagaaggtcttctcgatgaagttggcgagccagcgggag 33383464 Query: 152 gcggcgaagc 161 |||||||||| Sbjct: 33383463 gcggcgaagc 33383454 Score = 95.6 bits (48), Expect = 2e-16 Identities = 84/96 (87%) Strand = Plus / Minus Query: 528 cctcgatgtggaggaggtagatgtctgagtccaggatagcgttctggccgatgtggtagt 587 |||| |||||||| |||||||||||||| |||| ||| || ||||| || |||||||||| Sbjct: 33336313 cctcaatgtggagcaggtagatgtctgaatccaagatggcattctgcccaatgtggtagt 33336254 Query: 588 accaccgcggtatgaccttgtcgagccagacgccga 623 ||||||| ||||||| |||||| | ||||||||||| Sbjct: 33336253 accaccgtggtatgatcttgtccatccagacgccga 33336218 Score = 65.9 bits (33), Expect = 1e-07 Identities = 57/65 (87%) Strand = Plus / Minus Query: 398 gcccagccgacctgactcttgcagtgctttctgaaccagttcctgaaggcgatcaccatg 457 |||||||||| |||| ||| |||| ||||||||||||||| ||||||| ||| |||||| Sbjct: 33349392 gcccagccgatctgatgcttacagtactttctgaaccagtttctgaaggtgatgaccatg 33349333 Query: 458 ttgtc 462 ||||| Sbjct: 33349332 ttgtc 33349328 Score = 65.9 bits (33), Expect = 1e-07 Identities = 57/65 (87%) Strand = Plus / Minus Query: 398 gcccagccgacctgactcttgcagtgctttctgaaccagttcctgaaggcgatcaccatg 457 |||||||| |||||| |||||||| ||||||||||||||| ||||||| ||| | |||| Sbjct: 33343165 gcccagccaacctgatgcttgcagtactttctgaaccagtttctgaaggtgatgatcatg 33343106 Query: 458 ttgtc 462 ||||| Sbjct: 33343105 ttgtc 33343101 Score = 58.0 bits (29), Expect = 4e-05 Identities = 83/101 (82%) Strand = Plus / Minus Query: 398 gcccagccgacctgactcttgcagtgctttctgaaccagttcctgaaggcgatcaccatg 457 |||||||| | |||| |||||||| ||||||||||||||| ||||||| ||| | |||| Sbjct: 33336528 gcccagccaatctgatgcttgcagtactttctgaaccagtttctgaaggtgatgatcatg 33336469 Query: 458 ttgtccgacgacgtcggcacgtacacggctttctgccagtt 498 ||||| || || || ||||| || |||||||||||||| Sbjct: 33336468 ttgtcagatgatgtgggcacatagcaagctttctgccagtt 33336428 Score = 42.1 bits (21), Expect = 2.2 Identities = 66/81 (81%) Strand = Plus / Minus Query: 400 ccagccgacctgactcttgcagtgctttctgaaccagttcctgaaggcgatcaccatgtt 459 |||||| |||||| | || |||| ||| |||||||||| ||||||||||| | || ||| Sbjct: 33357544 ccagccaacctgattgttacagtacttcttgaaccagtttctgaaggcgatgatcaagtt 33357485 Query: 460 gtccgacgacgtcggcacgta 480 ||| || || || |||||||| Sbjct: 33357484 gtcagatgatgtgggcacgta 33357464 Score = 40.1 bits (20), Expect = 8.5 Identities = 29/32 (90%) Strand = Plus / Minus Query: 338 tacctctccatgagcttgtctttggttggagt 369 |||||||||||||||| |||||||| ||||| Sbjct: 33343225 tacctctccatgagctgatctttggtaggagt 33343194
>gb|AC135563.5| Oryza sativa chromosome 3 BAC OSJNBb0015I02 genomic sequence, complete sequence Length = 122815 Score = 256 bits (129), Expect = 8e-65 Identities = 228/261 (87%) Strand = Plus / Minus Query: 82 tcacttgtaggcatggacgtaatcctggaaatagaagttcttctcgatgaagctggcgag 141 ||||||||| ||||||||||| |||||||||||||||||||||||||||||| ||||||| Sbjct: 93498 tcacttgtaagcatggacgtagtcctggaaatagaagttcttctcgatgaagttggcgag 93439 Query: 142 ccagcgggacgcggcgaagcacagcaccgccaatgtcacgacggcggctctctgcacgac 201 ||||||||| ||||||||||||||||| ||| | ||||||||||| ||||||||| || Sbjct: 93438 ccagcgggaggcggcgaagcacagcacggccgcagccacgacggcggatctctgcacaac 93379 Query: 202 cgacgtcactagtgtccccttggcgaccgcaaggaaaccgacgaccgccaccgacgcgac 261 |||||| || | |||||||||||||| || ||||| |||||||| || |||||||| || Sbjct: 93378 cgacgtgaccaccgtccccttggcgacggcgaggaacccgacgacggcgaccgacgccac 93319 Query: 262 ctgcagggcaacctccagcgctttcatggtcttcagcgccgtgctgcagctcctgcactg 321 ||||||||| ||||||||||| ||||| ||||||| || |||||||||| ||||||| Sbjct: 93318 ctgcagggcgacctccagcgccttcatcttcttcagtgcaccgctgcagctcgtgcactg 93259 Query: 322 cgcgacgtgcgaccagtacct 342 | |||||||||||| ||||| Sbjct: 93258 catgacgtgcgaccaatacct 93238 Score = 184 bits (93), Expect = 2e-43 Identities = 219/261 (83%) Strand = Plus / Minus Query: 82 tcacttgtaggcatggacgtaatcctggaaatagaagttcttctcgatgaagctggcgag 141 ||||||||| ||||||||||| |||||||| |||||| ||||||| |||||||| ||||| Sbjct: 106347 tcacttgtaagcatggacgtagtcctggaagtagaagctcttctcaatgaagctcgcgag 106288 Query: 142 ccagcgggacgcggcgaagcacagcaccgccaatgtcacgacggcggctctctgcacgac 201 ||||||||| ||||||||||||||||| || | |||| ||||||||| | | || || Sbjct: 106287 ccagcgggaggcggcgaagcacagcacggcggtagacacggcggcggctcgccggacaac 106228 Query: 202 cgacgtcactagtgtccccttggcgaccgcaaggaaaccgacgaccgccaccgacgcgac 261 ||||| |||| ||||||||||||| || ||||| ||||||| || |||||||| || Sbjct: 106227 cgacggtgctagactccccttggcgacggcgaggaatccgacgatggcgaccgacgccac 106168 Query: 262 ctgcagggcaacctccagcgctttcatggtcttcagcgccgtgctgcagctcctgcactg 321 ||||||||| ||||||||||| ||||| ||||||| || | |||||||||| ||||||| Sbjct: 106167 ctgcagggcgacctccagcgccttcatcttcttcagtgcagcgctgcagctcgtgcactg 106108 Query: 322 cgcgacgtgcgaccagtacct 342 | ||| ||||||| |||||| Sbjct: 106107 catgacatgcgacctgtacct 106087 Score = 180 bits (91), Expect = 4e-42 Identities = 202/239 (84%) Strand = Plus / Minus Query: 104 tcctggaaatagaagttcttctcgatgaagctggcgagccagcgggacgcggcgaagcac 163 |||| |||||||||| ||||||||||||||| ||||||||||||||| |||||||||||| Sbjct: 114524 tcctcgaaatagaaggtcttctcgatgaagccggcgagccagcgggaggcggcgaagcac 114465 Query: 164 agcaccgccaatgtcacgacggcggctctctgcacgaccgacgtcactagtgtccccttg 223 ||||||||| | |||||||||||||||||| || ||||||| || | ||||||||| Sbjct: 114464 agcaccgccgcagccacgacggcggctctctgaacacccgacgtgaccaccgtccccttg 114405 Query: 224 gcgaccgcaaggaaaccgacgaccgccaccgacgcgacctgcagggcaacctccagcgct 283 || | || ||||| |||||||| || ||||| || ||||||||||| |||||||| ||| Sbjct: 114404 ccggcggcgaggaacccgacgacggcgaccgaagccacctgcagggcgacctccagagct 114345 Query: 284 ttcatggtcttcagcgccgtgctgcagctcctgcactgcgcgacgtgcgaccagtacct 342 |||| |||||| || | |||||||||| |||||||| ||| |||||||||||||| Sbjct: 114344 ctcatccacttcagtgcagcgctgcagctcgtgcactgcatgacatgcgaccagtacct 114286 Score = 129 bits (65), Expect = 1e-26 Identities = 216/264 (81%), Gaps = 3/264 (1%) Strand = Plus / Minus Query: 82 tcacttgtaggcatggacgtaatcctggaaatagaagttcttctcgatgaagctggcgag 141 ||||||||| |||||||| || |||||||| |||||| | |||||||||||| ||||||| Sbjct: 100111 tcacttgtaagcatggacatagtcctggaagtagaagcttttctcgatgaagttggcgag 100052 Query: 142 ccagcgggacgcggcgaagcacagcaccgccaatgtcacgacggcggctctctgcacgac 201 ||||||||| || |||||||||||| | ||| | |||||||||||||||||| || | Sbjct: 100051 ccagcgggaggcagcgaagcacagcgcggccgcagccacgacggcggctctctgaaccgc 99992 Query: 202 cgacgtcacta--gt-gtccccttggcgaccgcaaggaaaccgacgaccgccaccgacgc 258 |||||| || | || ||||||||| || | || ||||| |||||||| || |||||||| Sbjct: 99991 cgacgtgaccaccgtcgtccccttgccggcggcgaggaacccgacgacggcgaccgacgc 99932 Query: 259 gacctgcagggcaacctccagcgctttcatggtcttcagcgccgtgctgcagctcctgca 318 |||||||| || ||||||| ||| |||| |||||| || | ||||||||| |||| Sbjct: 99931 cacctgcagtgcgacctccatcgccctcatccacttcagtgcagcgctgcagctggtgca 99872 Query: 319 ctgcgcgacgtgcgaccagtacct 342 |||| ||| || ||||||||||| Sbjct: 99871 ctgcatgacatgtgaccagtacct 99848 Score = 95.6 bits (48), Expect = 2e-16 Identities = 84/96 (87%) Strand = Plus / Minus Query: 528 cctcgatgtggaggaggtagatgtctgagtccaggatagcgttctggccgatgtggtagt 587 |||| |||||||| |||||||||||||| |||| ||| || ||||| || |||||||||| Sbjct: 92829 cctcaatgtggagcaggtagatgtctgaatccaagatggcattctgcccaatgtggtagt 92770 Query: 588 accaccgcggtatgaccttgtcgagccagacgccga 623 ||||||| ||||||| |||||| | ||||||||||| Sbjct: 92769 accaccgtggtatgatcttgtccatccagacgccga 92734 Score = 65.9 bits (33), Expect = 1e-07 Identities = 57/65 (87%) Strand = Plus / Minus Query: 398 gcccagccgacctgactcttgcagtgctttctgaaccagttcctgaaggcgatcaccatg 457 |||||||||| |||| ||| |||| ||||||||||||||| ||||||| ||| |||||| Sbjct: 105908 gcccagccgatctgatgcttacagtactttctgaaccagtttctgaaggtgatgaccatg 105849 Query: 458 ttgtc 462 ||||| Sbjct: 105848 ttgtc 105844 Score = 65.9 bits (33), Expect = 1e-07 Identities = 57/65 (87%) Strand = Plus / Minus Query: 398 gcccagccgacctgactcttgcagtgctttctgaaccagttcctgaaggcgatcaccatg 457 |||||||| |||||| |||||||| ||||||||||||||| ||||||| ||| | |||| Sbjct: 99681 gcccagccaacctgatgcttgcagtactttctgaaccagtttctgaaggtgatgatcatg 99622 Query: 458 ttgtc 462 ||||| Sbjct: 99621 ttgtc 99617 Score = 58.0 bits (29), Expect = 4e-05 Identities = 83/101 (82%) Strand = Plus / Minus Query: 398 gcccagccgacctgactcttgcagtgctttctgaaccagttcctgaaggcgatcaccatg 457 |||||||| | |||| |||||||| ||||||||||||||| ||||||| ||| | |||| Sbjct: 93044 gcccagccaatctgatgcttgcagtactttctgaaccagtttctgaaggtgatgatcatg 92985 Query: 458 ttgtccgacgacgtcggcacgtacacggctttctgccagtt 498 ||||| || || || ||||| || |||||||||||||| Sbjct: 92984 ttgtcagatgatgtgggcacatagcaagctttctgccagtt 92944 Score = 42.1 bits (21), Expect = 2.2 Identities = 66/81 (81%) Strand = Plus / Minus Query: 400 ccagccgacctgactcttgcagtgctttctgaaccagttcctgaaggcgatcaccatgtt 459 |||||| |||||| | || |||| ||| |||||||||| ||||||||||| | || ||| Sbjct: 114060 ccagccaacctgattgttacagtacttcttgaaccagtttctgaaggcgatgatcaagtt 114001 Query: 460 gtccgacgacgtcggcacgta 480 ||| || || || |||||||| Sbjct: 114000 gtcagatgatgtgggcacgta 113980 Score = 40.1 bits (20), Expect = 8.5 Identities = 29/32 (90%) Strand = Plus / Minus Query: 338 tacctctccatgagcttgtctttggttggagt 369 |||||||||||||||| |||||||| ||||| Sbjct: 99741 tacctctccatgagctgatctttggtaggagt 99710
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 256 bits (129), Expect = 8e-65 Identities = 228/261 (87%) Strand = Plus / Minus Query: 82 tcacttgtaggcatggacgtaatcctggaaatagaagttcttctcgatgaagctggcgag 141 ||||||||| ||||||||||| |||||||||||||||||||||||||||||| ||||||| Sbjct: 33427492 tcacttgtaagcatggacgtagtcctggaaatagaagttcttctcgatgaagttggcgag 33427433 Query: 142 ccagcgggacgcggcgaagcacagcaccgccaatgtcacgacggcggctctctgcacgac 201 ||||||||| ||||||||||||||||| ||| | ||||||||||| ||||||||| || Sbjct: 33427432 ccagcgggaggcggcgaagcacagcacggccgcagccacgacggcggatctctgcacaac 33427373 Query: 202 cgacgtcactagtgtccccttggcgaccgcaaggaaaccgacgaccgccaccgacgcgac 261 |||||| || | |||||||||||||| || ||||| |||||||| || |||||||| || Sbjct: 33427372 cgacgtgaccaccgtccccttggcgacggcgaggaacccgacgacggcgaccgacgccac 33427313 Query: 262 ctgcagggcaacctccagcgctttcatggtcttcagcgccgtgctgcagctcctgcactg 321 ||||||||| ||||||||||| ||||| ||||||| || |||||||||| ||||||| Sbjct: 33427312 ctgcagggcgacctccagcgccttcatcttcttcagtgcaccgctgcagctcgtgcactg 33427253 Query: 322 cgcgacgtgcgaccagtacct 342 | |||||||||||| ||||| Sbjct: 33427252 catgacgtgcgaccaatacct 33427232 Score = 184 bits (93), Expect = 2e-43 Identities = 219/261 (83%) Strand = Plus / Minus Query: 82 tcacttgtaggcatggacgtaatcctggaaatagaagttcttctcgatgaagctggcgag 141 ||||||||| ||||||||||| |||||||| |||||| ||||||| |||||||| ||||| Sbjct: 33440341 tcacttgtaagcatggacgtagtcctggaagtagaagctcttctcaatgaagctcgcgag 33440282 Query: 142 ccagcgggacgcggcgaagcacagcaccgccaatgtcacgacggcggctctctgcacgac 201 ||||||||| ||||||||||||||||| || | |||| ||||||||| | | || || Sbjct: 33440281 ccagcgggaggcggcgaagcacagcacggcggtagacacggcggcggctcgccggacaac 33440222 Query: 202 cgacgtcactagtgtccccttggcgaccgcaaggaaaccgacgaccgccaccgacgcgac 261 ||||| |||| ||||||||||||| || ||||| ||||||| || |||||||| || Sbjct: 33440221 cgacggtgctagactccccttggcgacggcgaggaatccgacgatggcgaccgacgccac 33440162 Query: 262 ctgcagggcaacctccagcgctttcatggtcttcagcgccgtgctgcagctcctgcactg 321 ||||||||| ||||||||||| ||||| ||||||| || | |||||||||| ||||||| Sbjct: 33440161 ctgcagggcgacctccagcgccttcatcttcttcagtgcagcgctgcagctcgtgcactg 33440102 Query: 322 cgcgacgtgcgaccagtacct 342 | ||| ||||||| |||||| Sbjct: 33440101 catgacatgcgacctgtacct 33440081 Score = 180 bits (91), Expect = 4e-42 Identities = 202/239 (84%) Strand = Plus / Minus Query: 104 tcctggaaatagaagttcttctcgatgaagctggcgagccagcgggacgcggcgaagcac 163 |||| |||||||||| ||||||||||||||| ||||||||||||||| |||||||||||| Sbjct: 33448518 tcctcgaaatagaaggtcttctcgatgaagccggcgagccagcgggaggcggcgaagcac 33448459 Query: 164 agcaccgccaatgtcacgacggcggctctctgcacgaccgacgtcactagtgtccccttg 223 ||||||||| | |||||||||||||||||| || ||||||| || | ||||||||| Sbjct: 33448458 agcaccgccgcagccacgacggcggctctctgaacacccgacgtgaccaccgtccccttg 33448399 Query: 224 gcgaccgcaaggaaaccgacgaccgccaccgacgcgacctgcagggcaacctccagcgct 283 || | || ||||| |||||||| || ||||| || ||||||||||| |||||||| ||| Sbjct: 33448398 ccggcggcgaggaacccgacgacggcgaccgaagccacctgcagggcgacctccagagct 33448339 Query: 284 ttcatggtcttcagcgccgtgctgcagctcctgcactgcgcgacgtgcgaccagtacct 342 |||| |||||| || | |||||||||| |||||||| ||| |||||||||||||| Sbjct: 33448338 ctcatccacttcagtgcagcgctgcagctcgtgcactgcatgacatgcgaccagtacct 33448280 Score = 129 bits (65), Expect = 1e-26 Identities = 216/264 (81%), Gaps = 3/264 (1%) Strand = Plus / Minus Query: 82 tcacttgtaggcatggacgtaatcctggaaatagaagttcttctcgatgaagctggcgag 141 ||||||||| |||||||| || |||||||| |||||| | |||||||||||| ||||||| Sbjct: 33434105 tcacttgtaagcatggacatagtcctggaagtagaagcttttctcgatgaagttggcgag 33434046 Query: 142 ccagcgggacgcggcgaagcacagcaccgccaatgtcacgacggcggctctctgcacgac 201 ||||||||| || |||||||||||| | ||| | |||||||||||||||||| || | Sbjct: 33434045 ccagcgggaggcagcgaagcacagcgcggccgcagccacgacggcggctctctgaaccgc 33433986 Query: 202 cgacgtcacta--gt-gtccccttggcgaccgcaaggaaaccgacgaccgccaccgacgc 258 |||||| || | || ||||||||| || | || ||||| |||||||| || |||||||| Sbjct: 33433985 cgacgtgaccaccgtcgtccccttgccggcggcgaggaacccgacgacggcgaccgacgc 33433926 Query: 259 gacctgcagggcaacctccagcgctttcatggtcttcagcgccgtgctgcagctcctgca 318 |||||||| || ||||||| ||| |||| |||||| || | ||||||||| |||| Sbjct: 33433925 cacctgcagtgcgacctccatcgccctcatccacttcagtgcagcgctgcagctggtgca 33433866 Query: 319 ctgcgcgacgtgcgaccagtacct 342 |||| ||| || ||||||||||| Sbjct: 33433865 ctgcatgacatgtgaccagtacct 33433842 Score = 107 bits (54), Expect = 4e-20 Identities = 66/70 (94%) Strand = Plus / Minus Query: 92 gcatggacgtaatcctggaaatagaagttcttctcgatgaagctggcgagccagcgggac 151 |||||||| |||||||||||||||||| |||||||||||||| |||||||||||||||| Sbjct: 33474033 gcatggacataatcctggaaatagaaggtcttctcgatgaagttggcgagccagcgggag 33473974 Query: 152 gcggcgaagc 161 |||||||||| Sbjct: 33473973 gcggcgaagc 33473964 Score = 95.6 bits (48), Expect = 2e-16 Identities = 84/96 (87%) Strand = Plus / Minus Query: 528 cctcgatgtggaggaggtagatgtctgagtccaggatagcgttctggccgatgtggtagt 587 |||| |||||||| |||||||||||||| |||| ||| || ||||| || |||||||||| Sbjct: 33426823 cctcaatgtggagcaggtagatgtctgaatccaagatggcattctgcccaatgtggtagt 33426764 Query: 588 accaccgcggtatgaccttgtcgagccagacgccga 623 ||||||| ||||||| |||||| | ||||||||||| Sbjct: 33426763 accaccgtggtatgatcttgtccatccagacgccga 33426728 Score = 65.9 bits (33), Expect = 1e-07 Identities = 57/65 (87%) Strand = Plus / Minus Query: 398 gcccagccgacctgactcttgcagtgctttctgaaccagttcctgaaggcgatcaccatg 457 |||||||||| |||| ||| |||| ||||||||||||||| ||||||| ||| |||||| Sbjct: 33439902 gcccagccgatctgatgcttacagtactttctgaaccagtttctgaaggtgatgaccatg 33439843 Query: 458 ttgtc 462 ||||| Sbjct: 33439842 ttgtc 33439838 Score = 65.9 bits (33), Expect = 1e-07 Identities = 57/65 (87%) Strand = Plus / Minus Query: 398 gcccagccgacctgactcttgcagtgctttctgaaccagttcctgaaggcgatcaccatg 457 |||||||| |||||| |||||||| ||||||||||||||| ||||||| ||| | |||| Sbjct: 33433675 gcccagccaacctgatgcttgcagtactttctgaaccagtttctgaaggtgatgatcatg 33433616 Query: 458 ttgtc 462 ||||| Sbjct: 33433615 ttgtc 33433611 Score = 58.0 bits (29), Expect = 4e-05 Identities = 83/101 (82%) Strand = Plus / Minus Query: 398 gcccagccgacctgactcttgcagtgctttctgaaccagttcctgaaggcgatcaccatg 457 |||||||| | |||| |||||||| ||||||||||||||| ||||||| ||| | |||| Sbjct: 33427038 gcccagccaatctgatgcttgcagtactttctgaaccagtttctgaaggtgatgatcatg 33426979 Query: 458 ttgtccgacgacgtcggcacgtacacggctttctgccagtt 498 ||||| || || || ||||| || |||||||||||||| Sbjct: 33426978 ttgtcagatgatgtgggcacatagcaagctttctgccagtt 33426938 Score = 42.1 bits (21), Expect = 2.2 Identities = 66/81 (81%) Strand = Plus / Minus Query: 400 ccagccgacctgactcttgcagtgctttctgaaccagttcctgaaggcgatcaccatgtt 459 |||||| |||||| | || |||| ||| |||||||||| ||||||||||| | || ||| Sbjct: 33448054 ccagccaacctgattgttacagtacttcttgaaccagtttctgaaggcgatgatcaagtt 33447995 Query: 460 gtccgacgacgtcggcacgta 480 ||| || || || |||||||| Sbjct: 33447994 gtcagatgatgtgggcacgta 33447974 Score = 40.1 bits (20), Expect = 8.5 Identities = 29/32 (90%) Strand = Plus / Minus Query: 338 tacctctccatgagcttgtctttggttggagt 369 |||||||||||||||| |||||||| ||||| Sbjct: 33433735 tacctctccatgagctgatctttggtaggagt 33433704
>ref|XM_470017.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1668 Score = 198 bits (100), Expect = 2e-47 Identities = 241/288 (83%) Strand = Plus / Minus Query: 82 tcacttgtaggcatggacgtaatcctggaaatagaagttcttctcgatgaagctggcgag 141 ||||||||| ||||||||||| |||||||| |||||| ||||||| |||||||| ||||| Sbjct: 1668 tcacttgtaagcatggacgtagtcctggaagtagaagctcttctcaatgaagctcgcgag 1609 Query: 142 ccagcgggacgcggcgaagcacagcaccgccaatgtcacgacggcggctctctgcacgac 201 ||||||||| ||||||||||||||||| || | |||| ||||||||| | | || || Sbjct: 1608 ccagcgggaggcggcgaagcacagcacggcggtagacacggcggcggctcgccggacaac 1549 Query: 202 cgacgtcactagtgtccccttggcgaccgcaaggaaaccgacgaccgccaccgacgcgac 261 ||||| |||| ||||||||||||| || ||||| ||||||| || |||||||| || Sbjct: 1548 cgacggtgctagactccccttggcgacggcgaggaatccgacgatggcgaccgacgccac 1489 Query: 262 ctgcagggcaacctccagcgctttcatggtcttcagcgccgtgctgcagctcctgcactg 321 ||||||||| ||||||||||| ||||| ||||||| || | |||||||||| ||||||| Sbjct: 1488 ctgcagggcgacctccagcgccttcatcttcttcagtgcagcgctgcagctcgtgcactg 1429 Query: 322 cgcgacgtgcgaccagtacctctccatgagcttgtctttggttggagt 369 | ||| ||||||| ||||||||||| || || |||||||| ||||| Sbjct: 1428 catgacatgcgacctgtacctctccaagacctgatctttggtaggagt 1381 Score = 83.8 bits (42), Expect = 6e-13 Identities = 123/150 (82%) Strand = Plus / Minus Query: 398 gcccagccgacctgactcttgcagtgctttctgaaccagttcctgaaggcgatcaccatg 457 |||||||||| |||| ||| |||| ||||||||||||||| ||||||| ||| |||||| Sbjct: 1352 gcccagccgatctgatgcttacagtactttctgaaccagtttctgaaggtgatgaccatg 1293 Query: 458 ttgtccgacgacgtcggcacgtacacggctttctgccagttttcgacgcccgccgcagcg 517 ||||| || || || ||||| || ||||| |||||||| || | ||| ||| ||| Sbjct: 1292 ttgtcagatgatgtgggcacataacaagctttgtgccagttatcaaggccaaccgtggcg 1233 Query: 518 aagttgcgctcctcgatgtggaggaggtag 547 |||||||||||||| || |||||||||||| Sbjct: 1232 aagttgcgctcctcaatatggaggaggtag 1203
>ref|XM_470014.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1659 Score = 198 bits (100), Expect = 2e-47 Identities = 241/288 (83%) Strand = Plus / Minus Query: 82 tcacttgtaggcatggacgtaatcctggaaatagaagttcttctcgatgaagctggcgag 141 ||||||||| ||||||||||| |||||||| |||||| ||||||| |||||||| ||||| Sbjct: 1659 tcacttgtaagcatggacgtagtcctggaagtagaagctcttctcaatgaagctcgcgag 1600 Query: 142 ccagcgggacgcggcgaagcacagcaccgccaatgtcacgacggcggctctctgcacgac 201 ||||||||| ||||||||||||||||| || | |||| ||||||||| | | || || Sbjct: 1599 ccagcgggaggcggcgaagcacagcacggcggtagacacggcggcggctcgccggacaac 1540 Query: 202 cgacgtcactagtgtccccttggcgaccgcaaggaaaccgacgaccgccaccgacgcgac 261 ||||| |||| ||||||||||||| || ||||| ||||||| || |||||||| || Sbjct: 1539 cgacggtgctagactccccttggcgacggcgaggaatccgacgatggcgaccgacgccac 1480 Query: 262 ctgcagggcaacctccagcgctttcatggtcttcagcgccgtgctgcagctcctgcactg 321 ||||||||| ||||||||||| ||||| ||||||| || | |||||||||| ||||||| Sbjct: 1479 ctgcagggcgacctccagcgccttcatcttcttcagtgcagcgctgcagctcgtgcactg 1420 Query: 322 cgcgacgtgcgaccagtacctctccatgagcttgtctttggttggagt 369 | ||| ||||||| ||||||||||| || || |||||||| ||||| Sbjct: 1419 catgacatgcgacctgtacctctccaagacctgatctttggtaggagt 1372 Score = 83.8 bits (42), Expect = 6e-13 Identities = 123/150 (82%) Strand = Plus / Minus Query: 398 gcccagccgacctgactcttgcagtgctttctgaaccagttcctgaaggcgatcaccatg 457 |||||||||| |||| ||| |||| ||||||||||||||| ||||||| ||| |||||| Sbjct: 1343 gcccagccgatctgatgcttacagtactttctgaaccagtttctgaaggtgatgaccatg 1284 Query: 458 ttgtccgacgacgtcggcacgtacacggctttctgccagttttcgacgcccgccgcagcg 517 ||||| || || || ||||| || ||||| |||||||| || | ||| ||| ||| Sbjct: 1283 ttgtcagatgatgtgggcacataacaagctttgtgccagttatcaaggccaaccgtggcg 1224 Query: 518 aagttgcgctcctcgatgtggaggaggtag 547 |||||||||||||| || |||||||||||| Sbjct: 1223 aagttgcgctcctcaatatggaggaggtag 1194
>ref|XM_470018.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1578 Score = 186 bits (94), Expect = 6e-44 Identities = 205/242 (84%) Strand = Plus / Minus Query: 104 tcctggaaatagaagttcttctcgatgaagctggcgagccagcgggacgcggcgaagcac 163 |||| |||||||||| ||||||||||||||| ||||||||||||||| |||||||||||| Sbjct: 1556 tcctcgaaatagaaggtcttctcgatgaagccggcgagccagcgggaggcggcgaagcac 1497 Query: 164 agcaccgccaatgtcacgacggcggctctctgcacgaccgacgtcactagtgtccccttg 223 ||||||||| | |||||||||||||||||| || ||||||| || | ||||||||| Sbjct: 1496 agcaccgccgcagccacgacggcggctctctgaacacccgacgtgaccaccgtccccttg 1437 Query: 224 gcgaccgcaaggaaaccgacgaccgccaccgacgcgacctgcagggcaacctccagcgct 283 || | || ||||| |||||||| || ||||| || ||||||||||| |||||||| ||| Sbjct: 1436 ccggcggcgaggaacccgacgacggcgaccgaagccacctgcagggcgacctccagagct 1377 Query: 284 ttcatggtcttcagcgccgtgctgcagctcctgcactgcgcgacgtgcgaccagtacctc 343 |||| |||||| || | |||||||||| |||||||| ||| ||||||||||||||| Sbjct: 1376 ctcatccacttcagtgcagcgctgcagctcgtgcactgcatgacatgcgaccagtacctc 1317 Query: 344 tc 345 || Sbjct: 1316 tc 1315 Score = 42.1 bits (21), Expect = 2.2 Identities = 66/81 (81%) Strand = Plus / Minus Query: 400 ccagccgacctgactcttgcagtgctttctgaaccagttcctgaaggcgatcaccatgtt 459 |||||| |||||| | || |||| ||| |||||||||| ||||||||||| | || ||| Sbjct: 1260 ccagccaacctgattgttacagtacttcttgaaccagtttctgaaggcgatgatcaagtt 1201 Query: 460 gtccgacgacgtcggcacgta 480 ||| || || || |||||||| Sbjct: 1200 gtcagatgatgtgggcacgta 1180
>ref|XM_470015.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1566 Score = 186 bits (94), Expect = 6e-44 Identities = 205/242 (84%) Strand = Plus / Minus Query: 104 tcctggaaatagaagttcttctcgatgaagctggcgagccagcgggacgcggcgaagcac 163 |||| |||||||||| ||||||||||||||| ||||||||||||||| |||||||||||| Sbjct: 1544 tcctcgaaatagaaggtcttctcgatgaagccggcgagccagcgggaggcggcgaagcac 1485 Query: 164 agcaccgccaatgtcacgacggcggctctctgcacgaccgacgtcactagtgtccccttg 223 ||||||||| | |||||||||||||||||| || ||||||| || | ||||||||| Sbjct: 1484 agcaccgccgcagccacgacggcggctctctgaacacccgacgtgaccaccgtccccttg 1425 Query: 224 gcgaccgcaaggaaaccgacgaccgccaccgacgcgacctgcagggcaacctccagcgct 283 || | || ||||| |||||||| || ||||| || ||||||||||| |||||||| ||| Sbjct: 1424 ccggcggcgaggaacccgacgacggcgaccgaagccacctgcagggcgacctccagagct 1365 Query: 284 ttcatggtcttcagcgccgtgctgcagctcctgcactgcgcgacgtgcgaccagtacctc 343 |||| |||||| || | |||||||||| |||||||| ||| ||||||||||||||| Sbjct: 1364 ctcatccacttcagtgcagcgctgcagctcgtgcactgcatgacatgcgaccagtacctc 1305 Query: 344 tc 345 || Sbjct: 1304 tc 1303 Score = 42.1 bits (21), Expect = 2.2 Identities = 66/81 (81%) Strand = Plus / Minus Query: 400 ccagccgacctgactcttgcagtgctttctgaaccagttcctgaaggcgatcaccatgtt 459 |||||| |||||| | || |||| ||| |||||||||| ||||||||||| | || ||| Sbjct: 1248 ccagccaacctgattgttacagtacttcttgaaccagtttctgaaggcgatgatcaagtt 1189 Query: 460 gtccgacgacgtcggcacgta 480 ||| || || || |||||||| Sbjct: 1188 gtcagatgatgtgggcacgta 1168
>gb|AC135958.2| Oryza sativa chromosome 3 BAC OSJNBa0059E14 genomic sequence, complete sequence Length = 154555 Score = 184 bits (93), Expect = 2e-43 Identities = 219/261 (83%) Strand = Plus / Plus Query: 82 tcacttgtaggcatggacgtaatcctggaaatagaagttcttctcgatgaagctggcgag 141 ||||||||| ||||||||||| |||||||| |||||| ||||||| |||||||| ||||| Sbjct: 148280 tcacttgtaagcatggacgtagtcctggaagtagaagctcttctcaatgaagctcgcgag 148339 Query: 142 ccagcgggacgcggcgaagcacagcaccgccaatgtcacgacggcggctctctgcacgac 201 ||||||||| ||||||||||||||||| || | |||| ||||||||| | | || || Sbjct: 148340 ccagcgggaggcggcgaagcacagcacggcggtagacacggcggcggctcgccggacaac 148399 Query: 202 cgacgtcactagtgtccccttggcgaccgcaaggaaaccgacgaccgccaccgacgcgac 261 ||||| |||| ||||||||||||| || ||||| ||||||| || |||||||| || Sbjct: 148400 cgacggtgctagactccccttggcgacggcgaggaatccgacgatggcgaccgacgccac 148459 Query: 262 ctgcagggcaacctccagcgctttcatggtcttcagcgccgtgctgcagctcctgcactg 321 ||||||||| ||||||||||| ||||| ||||||| || | |||||||||| ||||||| Sbjct: 148460 ctgcagggcgacctccagcgccttcatcttcttcagtgcagcgctgcagctcgtgcactg 148519 Query: 322 cgcgacgtgcgaccagtacct 342 | ||| ||||||| |||||| Sbjct: 148520 catgacatgcgacctgtacct 148540 Score = 180 bits (91), Expect = 4e-42 Identities = 202/239 (84%) Strand = Plus / Plus Query: 104 tcctggaaatagaagttcttctcgatgaagctggcgagccagcgggacgcggcgaagcac 163 |||| |||||||||| ||||||||||||||| ||||||||||||||| |||||||||||| Sbjct: 140103 tcctcgaaatagaaggtcttctcgatgaagccggcgagccagcgggaggcggcgaagcac 140162 Query: 164 agcaccgccaatgtcacgacggcggctctctgcacgaccgacgtcactagtgtccccttg 223 ||||||||| | |||||||||||||||||| || ||||||| || | ||||||||| Sbjct: 140163 agcaccgccgcagccacgacggcggctctctgaacacccgacgtgaccaccgtccccttg 140222 Query: 224 gcgaccgcaaggaaaccgacgaccgccaccgacgcgacctgcagggcaacctccagcgct 283 || | || ||||| |||||||| || ||||| || ||||||||||| |||||||| ||| Sbjct: 140223 ccggcggcgaggaacccgacgacggcgaccgaagccacctgcagggcgacctccagagct 140282 Query: 284 ttcatggtcttcagcgccgtgctgcagctcctgcactgcgcgacgtgcgaccagtacct 342 |||| |||||| || | |||||||||| |||||||| ||| |||||||||||||| Sbjct: 140283 ctcatccacttcagtgcagcgctgcagctcgtgcactgcatgacatgcgaccagtacct 140341 Score = 107 bits (54), Expect = 4e-20 Identities = 66/70 (94%) Strand = Plus / Plus Query: 92 gcatggacgtaatcctggaaatagaagttcttctcgatgaagctggcgagccagcgggac 151 |||||||| |||||||||||||||||| |||||||||||||| |||||||||||||||| Sbjct: 114588 gcatggacataatcctggaaatagaaggtcttctcgatgaagttggcgagccagcgggag 114647 Query: 152 gcggcgaagc 161 |||||||||| Sbjct: 114648 gcggcgaagc 114657 Score = 65.9 bits (33), Expect = 1e-07 Identities = 57/65 (87%) Strand = Plus / Plus Query: 398 gcccagccgacctgactcttgcagtgctttctgaaccagttcctgaaggcgatcaccatg 457 |||||||||| |||| ||| |||| ||||||||||||||| ||||||| ||| |||||| Sbjct: 148719 gcccagccgatctgatgcttacagtactttctgaaccagtttctgaaggtgatgaccatg 148778 Query: 458 ttgtc 462 ||||| Sbjct: 148779 ttgtc 148783 Score = 42.1 bits (21), Expect = 2.2 Identities = 66/81 (81%) Strand = Plus / Plus Query: 400 ccagccgacctgactcttgcagtgctttctgaaccagttcctgaaggcgatcaccatgtt 459 |||||| |||||| | || |||| ||| |||||||||| ||||||||||| | || ||| Sbjct: 140567 ccagccaacctgattgttacagtacttcttgaaccagtttctgaaggcgatgatcaagtt 140626 Query: 460 gtccgacgacgtcggcacgta 480 ||| || || || |||||||| Sbjct: 140627 gtcagatgatgtgggcacgta 140647
>ref|XM_470013.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1584 Score = 159 bits (80), Expect = 1e-35 Identities = 240/291 (82%), Gaps = 3/291 (1%) Strand = Plus / Minus Query: 82 tcacttgtaggcatggacgtaatcctggaaatagaagttcttctcgatgaagctggcgag 141 ||||||||| |||||||| || |||||||| |||||| | |||||||||||| ||||||| Sbjct: 1584 tcacttgtaagcatggacatagtcctggaagtagaagcttttctcgatgaagttggcgag 1525 Query: 142 ccagcgggacgcggcgaagcacagcaccgccaatgtcacgacggcggctctctgcacgac 201 ||||||||| || |||||||||||| | ||| | |||||||||||||||||| || | Sbjct: 1524 ccagcgggaggcagcgaagcacagcgcggccgcagccacgacggcggctctctgaaccgc 1465 Query: 202 cgacgtcacta--gt-gtccccttggcgaccgcaaggaaaccgacgaccgccaccgacgc 258 |||||| || | || ||||||||| || | || ||||| |||||||| || |||||||| Sbjct: 1464 cgacgtgaccaccgtcgtccccttgccggcggcgaggaacccgacgacggcgaccgacgc 1405 Query: 259 gacctgcagggcaacctccagcgctttcatggtcttcagcgccgtgctgcagctcctgca 318 |||||||| || ||||||| ||| |||| |||||| || | ||||||||| |||| Sbjct: 1404 cacctgcagtgcgacctccatcgccctcatccacttcagtgcagcgctgcagctggtgca 1345 Query: 319 ctgcgcgacgtgcgaccagtacctctccatgagcttgtctttggttggagt 369 |||| ||| || |||||||||||||||||||||| |||||||| ||||| Sbjct: 1344 ctgcatgacatgtgaccagtacctctccatgagctgatctttggtaggagt 1294 Score = 81.8 bits (41), Expect = 3e-12 Identities = 122/149 (81%) Strand = Plus / Minus Query: 398 gcccagccgacctgactcttgcagtgctttctgaaccagttcctgaaggcgatcaccatg 457 |||||||| |||||| |||||||| ||||||||||||||| ||||||| ||| | |||| Sbjct: 1265 gcccagccaacctgatgcttgcagtactttctgaaccagtttctgaaggtgatgatcatg 1206 Query: 458 ttgtccgacgacgtcggcacgtacacggctttctgccagttttcgacgcccgccgcagcg 517 ||||| || | || || || || ||||||||||| || || ||||| |||| ||| Sbjct: 1205 ttgtcagataaagtgggaacatagcaagctttctgccatttatcaacgccaaccgccgcg 1146 Query: 518 aagttgcgctcctcgatgtggaggaggta 546 || |||||||||||||| ||||||||||| Sbjct: 1145 aaattgcgctcctcgatatggaggaggta 1117
>gb|AY109924.1| Zea mays CL64795_1 mRNA sequence Length = 748 Score = 159 bits (80), Expect = 1e-35 Identities = 231/282 (81%) Strand = Plus / Minus Query: 82 tcacttgtaggcatggacgtaatcctggaaatagaagttcttctcgatgaagctggcgag 141 |||||||||||| |||| ||| | || || |||||| || ||| ||||||| |||| || Sbjct: 540 tcacttgtaggcgtggatgtagncttgaaagtagaagntcatctggatgaagttggcaag 481 Query: 142 ccagcgggacgcggcgaagcacagcaccgccaatgtcacgacggcggctctctgcacgac 201 ||| ||||| || |||||||||||||| ||| | |||||| ||||| ||||| || Sbjct: 480 ccaacgggaggcagcgaagcacagcacggccgccgacacgactgcggccctctgaacagt 421 Query: 202 cgacgtcactagtgtccccttggcgaccgcaaggaaaccgacgaccgccaccgacgcgac 261 ||||| | | || ||||| ||||| |||||||| |||||||| || ||||| || || Sbjct: 420 tgacgtgaggaccgttcccttagcgacggcaaggaacccgacgacggcgaccgaggccac 361 Query: 262 ctgcagggcaacctccagcgctttcatggtcttcagcgccgtgctgcagctcctgcactg 321 |||||||||| |||| ||||| ||||||||||| ||||||| | |||||||||||||||| Sbjct: 360 ctgcagggcagcctcgagcgccttcatggtcttgagcgccgcgttgcagctcctgcactg 301 Query: 322 cgcgacgtgcgaccagtacctctccatgagcttgtctttggt 363 | | ||||||||||| |||||||||||||||| ||| ||||| Sbjct: 300 caccacgtgcgaccaatacctctccatgagctggtccttggt 259 Score = 135 bits (68), Expect = 2e-28 Identities = 158/188 (84%) Strand = Plus / Minus Query: 398 gcccagccgacctgactcttgcagtgctttctgaaccagttcctgaaggcgatcaccatg 457 |||||||||||||| |||||||| ||||||||||||||||||||||||| ||||||| Sbjct: 224 gcccagccgacctggttcttgcagaattttctgaaccagttcctgaaggcgaccaccatg 165 Query: 458 ttgtccgacgacgtcggcacgtacacggctttctgccagttttcgacgcccgccgcagcg 517 |||||||||||||||||||||| ||| |||||||||| || | || |||||||| Sbjct: 164 gcgtccgacgacgtcggcacgtaccaagctctctgccagttatccagccctgccgcagca 105 Query: 518 aagttgcgctcctcgatgtggaggaggtagatgtctgagtccaggatagcgttctggccg 577 || || |||||||| | |||||||||| | |||||||| |||| ||| |||||||||| Sbjct: 104 aatttacgctcctcaacgtggaggaggaaaatgtctgaatccaatataaggttctggccg 45 Query: 578 atgtggta 585 | |||||| Sbjct: 44 acgtggta 37
>ref|XM_470021.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1536 Score = 107 bits (54), Expect = 4e-20 Identities = 66/70 (94%) Strand = Plus / Minus Query: 92 gcatggacgtaatcctggaaatagaagttcttctcgatgaagctggcgagccagcgggac 151 |||||||| |||||||||||||||||| |||||||||||||| |||||||||||||||| Sbjct: 1246 gcatggacataatcctggaaatagaaggtcttctcgatgaagttggcgagccagcgggag 1187 Query: 152 gcggcgaagc 161 |||||||||| Sbjct: 1186 gcggcgaagc 1177
>ref|XM_960207.1| Neurospora crassa OR74A hypothetical protein (NCU03200.1) partial mRNA Length = 2736 Score = 46.1 bits (23), Expect = 0.14 Identities = 23/23 (100%) Strand = Plus / Plus Query: 115 gaagttcttctcgatgaagctgg 137 ||||||||||||||||||||||| Sbjct: 2029 gaagttcttctcgatgaagctgg 2051
>ref|XM_330635.1| Neurospora crassa OR74A hypothetical protein (NCU03200.1) partial mRNA Length = 2736 Score = 46.1 bits (23), Expect = 0.14 Identities = 23/23 (100%) Strand = Plus / Plus Query: 115 gaagttcttctcgatgaagctgg 137 ||||||||||||||||||||||| Sbjct: 2029 gaagttcttctcgatgaagctgg 2051
>gb|AC025775.6| Homo sapiens chromosome 5 clone CTD-2299B9, complete sequence Length = 95782 Score = 44.1 bits (22), Expect = 0.55 Identities = 22/22 (100%) Strand = Plus / Plus Query: 533 atgtggaggaggtagatgtctg 554 |||||||||||||||||||||| Sbjct: 21962 atgtggaggaggtagatgtctg 21983
>emb|BX950251.1| Gallus gallus finished cDNA, clone ChEST706m10 Length = 1244 Score = 44.1 bits (22), Expect = 0.55 Identities = 25/26 (96%) Strand = Plus / Plus Query: 299 gccgtgctgcagctcctgcactgcgc 324 |||||||||||||||| ||||||||| Sbjct: 77 gccgtgctgcagctccagcactgcgc 102
>gb|AC026709.7| Homo sapiens chromosome 5 clone CTD-2084I18, complete sequence Length = 139402 Score = 44.1 bits (22), Expect = 0.55 Identities = 22/22 (100%) Strand = Plus / Minus Query: 533 atgtggaggaggtagatgtctg 554 |||||||||||||||||||||| Sbjct: 4601 atgtggaggaggtagatgtctg 4580
>gb|AY023913.1| Oryza sativa microsatellite MRG6238 containing (ATAG)X20, closest to marker R707, genomic sequence Length = 280 Score = 42.1 bits (21), Expect = 2.2 Identities = 27/29 (93%) Strand = Plus / Plus Query: 82 tcacttgtaggcatggacgtaatcctgga 110 ||||||||| ||||||||||| ||||||| Sbjct: 252 tcacttgtaagcatggacgtagtcctgga 280
>gb|AY023910.1| Oryza sativa microsatellite MRG6235 containing (ATAG)X17, closest to marker R707, genomic sequence Length = 268 Score = 42.1 bits (21), Expect = 2.2 Identities = 27/29 (93%) Strand = Plus / Plus Query: 82 tcacttgtaggcatggacgtaatcctgga 110 ||||||||| ||||||||||| ||||||| Sbjct: 240 tcacttgtaagcatggacgtagtcctgga 268
>gb|AC007865.8| Trypanosoma brucei chromosome 2 clone RPCI93-30M24, complete sequence Length = 148533 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 317 cactgcgcgacgtgcgaccag 337 ||||||||||||||||||||| Sbjct: 31132 cactgcgcgacgtgcgaccag 31152
>gb|AE017150.2| Trypanosoma brucei chromosome 2, complete sequence Length = 1193948 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 317 cactgcgcgacgtgcgaccag 337 ||||||||||||||||||||| Sbjct: 880110 cactgcgcgacgtgcgaccag 880090
>ref|XM_946581.1| Trypanosoma brucei TREU927 hypothetical protein (Tb927.2.4980) partial mRNA Length = 840 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 317 cactgcgcgacgtgcgaccag 337 ||||||||||||||||||||| Sbjct: 278 cactgcgcgacgtgcgaccag 298
>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome Length = 5178466 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 292 cttcagcgccgtgctgcagct 312 ||||||||||||||||||||| Sbjct: 1957778 cttcagcgccgtgctgcagct 1957798
>gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, complete sequence Length = 4895836 Score = 42.1 bits (21), Expect = 2.2 Identities = 27/29 (93%) Strand = Plus / Minus Query: 599 atgaccttgtcgagccagacgccgatgtt 627 |||| |||||||||||| ||||||||||| Sbjct: 1641054 atgaacttgtcgagccacacgccgatgtt 1641026
>gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete sequence Length = 2726152 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 125 tcgatgaagctggcgagccag 145 ||||||||||||||||||||| Sbjct: 1293006 tcgatgaagctggcgagccag 1293026
>emb|AL031734.9|HS652L8 Human DNA sequence from clone RP4-652L8 on chromosome 1q24.1-25.2 Contains a novel gene, the 5' end of the PLAC3 gene for placenta-specific 3 (PLAC3) and a protein tyrosine phosphatase type IVA (member 1) (PTP4A1) pseudogene, complete sequence Length = 168835 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 540 ggaggtagatgtctgagtcca 560 ||||||||||||||||||||| Sbjct: 166273 ggaggtagatgtctgagtcca 166293
>gb|AE003849.1| Xylella fastidiosa 9a5c, complete genome Length = 2679306 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 260 acctgcagggcaacctccagc 280 ||||||||||||||||||||| Sbjct: 560925 acctgcagggcaacctccagc 560905
>gb|CP000017.1| Streptococcus pyogenes MGAS5005, complete genome Length = 1838554 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 343 ctccatgagcttgtctttggttgg 366 |||||||||||| ||||||||||| Sbjct: 217634 ctccatgagcttttctttggttgg 217611
>gb|CP000003.1| Streptococcus pyogenes MGAS10394, complete genome Length = 1899877 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 343 ctccatgagcttgtctttggttgg 366 |||||||||||| ||||||||||| Sbjct: 249661 ctccatgagcttttctttggttgg 249638
>ref|XM_866685.1| PREDICTED: Bos taurus similar to programmed cell death 4 (LOC615005), mRNA Length = 447 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 532 gatgtggaggaggtagatgt 551 |||||||||||||||||||| Sbjct: 268 gatgtggaggaggtagatgt 287
>gb|AE006492.1| Streptococcus pyogenes M1 GAS, section 21 of 167 of the complete genome Length = 10643 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 343 ctccatgagcttgtctttggttgg 366 |||||||||||| ||||||||||| Sbjct: 262 ctccatgagcttttctttggttgg 239
>gb|CP000262.1| Streptococcus pyogenes MGAS10750, complete genome Length = 1937111 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 343 ctccatgagcttgtctttggttgg 366 |||||||||||| ||||||||||| Sbjct: 217460 ctccatgagcttttctttggttgg 217437
>gb|CP000261.1| Streptococcus pyogenes MGAS2096, complete genome Length = 1860355 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 343 ctccatgagcttgtctttggttgg 366 |||||||||||| ||||||||||| Sbjct: 225193 ctccatgagcttttctttggttgg 225170
>gb|CP000260.1| Streptococcus pyogenes MGAS10270, complete genome Length = 1928252 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 343 ctccatgagcttgtctttggttgg 366 |||||||||||| ||||||||||| Sbjct: 221849 ctccatgagcttttctttggttgg 221826
>gb|CP000259.1| Streptococcus pyogenes MGAS9429, complete genome Length = 1836467 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 343 ctccatgagcttgtctttggttgg 366 |||||||||||| ||||||||||| Sbjct: 224244 ctccatgagcttttctttggttgg 224221
>ref|XM_389543.1| Gibberella zeae PH-1 chromosome 4 hypothetical protein (FG09367.1) partial mRNA Length = 1656 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 603 ccttgtcgagccagacgccg 622 |||||||||||||||||||| Sbjct: 301 ccttgtcgagccagacgccg 282
>ref|XM_846527.1| PREDICTED: Canis familiaris hypothetical protein LOC609286 (LOC609286), mRNA Length = 1239 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 412 actcttgcagtgctttctga 431 |||||||||||||||||||| Sbjct: 229 actcttgcagtgctttctga 210
>gb|AC132616.2| Mus musculus BAC clone RP23-317F10 from chromosome 14, complete sequence Length = 213684 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 106 ctggaaatagaagttcttct 125 |||||||||||||||||||| Sbjct: 190976 ctggaaatagaagttcttct 190957
>ref|XM_773424.1| Giardia lamblia ATCC 50803 hypothetical protein (GLP_554_27067_28653) partial mRNA Length = 1587 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 422 tgctttctgaaccagttcct 441 |||||||||||||||||||| Sbjct: 42 tgctttctgaaccagttcct 23
>gb|CP000056.1| Streptococcus pyogenes MGAS6180, complete genome Length = 1897573 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 343 ctccatgagcttgtctttggttgg 366 |||||||||||| ||||||||||| Sbjct: 221157 ctccatgagcttttctttggttgg 221134
>emb|X60325.1|GLRPOA3 G.lamblia rpoA3 gene for subunit A of DNA dependent RNA polymerase III Length = 8333 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 422 tgctttctgaaccagttcct 441 |||||||||||||||||||| Sbjct: 1480 tgctttctgaaccagttcct 1461
>emb|X05630.1|RCPETG Rhodopseudomonas capsulata petABC operon Length = 4007 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 224 gcgaccgcaaggaaaccgac 243 |||||||||||||||||||| Sbjct: 2952 gcgaccgcaaggaaaccgac 2971
>gb|AC157546.7| Mus musculus chromosome 19, clone RP23-325I11, complete sequence Length = 173513 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 356 tctttggttggagtctctgg 375 |||||||||||||||||||| Sbjct: 23547 tctttggttggagtctctgg 23566
>gb|AE009971.1| Streptococcus pyogenes strain MGAS8232, section 19 of 173 of the complete genome Length = 10826 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 343 ctccatgagcttgtctttggttgg 366 |||||||||||| ||||||||||| Sbjct: 8707 ctccatgagcttttctttggttgg 8684
>dbj|AB169155.1| Macaca fascicularis testis cDNA, clone: QtsA-17630, similar to human KIAA1201 protein (KIAA1201), mRNA, RefSeq: XM_370660.2 Length = 2503 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 114 agaagttcttctcgatgaag 133 |||||||||||||||||||| Sbjct: 1753 agaagttcttctcgatgaag 1734
>gb|BC095599.1| Danio rerio plasticin, mRNA (cDNA clone MGC:111926 IMAGE:7430846), complete cds Length = 2135 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 121 cttctcgatgaagctggcga 140 |||||||||||||||||||| Sbjct: 352 cttctcgatgaagctggcga 333
>gb|AC156938.3| Mus musculus BAC clone RP23-314M12 from chromosome 14, complete sequence Length = 207534 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 106 ctggaaatagaagttcttct 125 |||||||||||||||||||| Sbjct: 99187 ctggaaatagaagttcttct 99168
>gb|AC158165.1| Mus musculus BAC clone RP23-462M21 from chromosome 6, complete sequence Length = 179032 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 353 ttgtctttggttggagtctc 372 |||||||||||||||||||| Sbjct: 33207 ttgtctttggttggagtctc 33188
>gb|AE014074.1| Streptococcus pyogenes MGAS315, complete genome Length = 1900521 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 343 ctccatgagcttgtctttggttgg 366 |||||||||||| ||||||||||| Sbjct: 208713 ctccatgagcttttctttggttgg 208690
>dbj|BA000034.2| Streptococcus pyogenes SSI-1 DNA, complete genome Length = 1894275 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 343 ctccatgagcttgtctttggttgg 366 |||||||||||| ||||||||||| Sbjct: 202623 ctccatgagcttttctttggttgg 202600
>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence Length = 3716413 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 257 gcgacctgcagggcaacctc 276 |||||||||||||||||||| Sbjct: 770359 gcgacctgcagggcaacctc 770340
>gb|AE016830.1| Enterococcus faecalis V583, complete genome Length = 3218031 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 426 ttctgaaccagttcctgaag 445 |||||||||||||||||||| Sbjct: 865930 ttctgaaccagttcctgaag 865911
>gb|AC122763.9| Mus musculus chromosome 19, clone RP24-68F2, complete sequence Length = 176325 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 356 tctttggttggagtctctgg 375 |||||||||||||||||||| Sbjct: 35916 tctttggttggagtctctgg 35897
>gb|AE017198.1| Lactobacillus johnsonii NCC 533, complete genome Length = 1992676 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 426 ttctgaaccagttcctgaag 445 |||||||||||||||||||| Sbjct: 1656084 ttctgaaccagttcctgaag 1656103
>gb|AC139185.5| Mus musculus BAC clone RP24-91B1 from 6, complete sequence Length = 191289 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 353 ttgtctttggttggagtctc 372 |||||||||||||||||||| Sbjct: 140390 ttgtctttggttggagtctc 140371
>emb|AL591711.22| Mouse DNA sequence from clone RP23-19L12 on chromosome 2, complete sequence Length = 197743 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 101 taatcctggaaatagaagtt 120 |||||||||||||||||||| Sbjct: 33875 taatcctggaaatagaagtt 33856 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,396,390 Number of Sequences: 3902068 Number of extensions: 4396390 Number of successful extensions: 80001 Number of sequences better than 10.0: 56 Number of HSP's better than 10.0 without gapping: 56 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 79424 Number of HSP's gapped (non-prelim): 571 length of query: 627 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 604 effective length of database: 17,143,297,704 effective search space: 10354551813216 effective search space used: 10354551813216 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
