ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal34a10 |
|---|---|
| Clone Library Name | barley_pub |
>PORB_HORVU (Q42850) Protochlorophyllide reductase B, chloroplast precursor (EC| 1.3.1.33) (PCR B) (NADPH-protochlorophyllide oxidoreductase B) (POR B) Length = 395 Score = 115 bits (288), Expect = 2e-26 Identities = 57/58 (98%), Positives = 57/58 (98%) Frame = -1 Query: 408 AGXRLAQVVSEPSLTKSGVYWSWNKNSASFENQLSEEASDTEKARKVWELSEKLVGLA 235 AG RLAQVVSEPSLTKSGVYWSWNKNSASFENQLSEEASDTEKARKVWELSEKLVGLA Sbjct: 338 AGKRLAQVVSEPSLTKSGVYWSWNKNSASFENQLSEEASDTEKARKVWELSEKLVGLA 395
>PORA_CUCSA (Q41249) Protochlorophyllide reductase, chloroplast precursor (EC| 1.3.1.33) (PCR) (NADPH-protochlorophyllide oxidoreductase) (POR) Length = 398 Score = 112 bits (280), Expect = 2e-25 Identities = 55/58 (94%), Positives = 56/58 (96%) Frame = -1 Query: 408 AGXRLAQVVSEPSLTKSGVYWSWNKNSASFENQLSEEASDTEKARKVWELSEKLVGLA 235 AG RLAQVVSEPSLTKSGVYWSWNKNSASFENQLS+EASD EKARKVWELSEKLVGLA Sbjct: 341 AGKRLAQVVSEPSLTKSGVYWSWNKNSASFENQLSQEASDAEKARKVWELSEKLVGLA 398
>POR_DAUCA (Q9SDT1) Protochlorophyllide reductase, chloroplast precursor (EC| 1.3.1.33) (PCR) (NADPH-protochlorophyllide oxidoreductase) (POR) Length = 398 Score = 109 bits (272), Expect = 2e-24 Identities = 53/58 (91%), Positives = 56/58 (96%) Frame = -1 Query: 408 AGXRLAQVVSEPSLTKSGVYWSWNKNSASFENQLSEEASDTEKARKVWELSEKLVGLA 235 +G RLAQVVSEPSLTKSGVYWSWNK+SASFENQLSEEASD EKARKVWE+SEKLVGLA Sbjct: 341 SGKRLAQVVSEPSLTKSGVYWSWNKDSASFENQLSEEASDVEKARKVWEVSEKLVGLA 398
>PORA_WHEAT (Q41578) Protochlorophyllide reductase A, chloroplast precursor (EC| 1.3.1.33) (PCR A) (NADPH-protochlorophyllide oxidoreductase A) (POR A) Length = 388 Score = 107 bits (268), Expect = 5e-24 Identities = 52/58 (89%), Positives = 56/58 (96%) Frame = -1 Query: 408 AGXRLAQVVSEPSLTKSGVYWSWNKNSASFENQLSEEASDTEKARKVWELSEKLVGLA 235 +G RLAQVV+EPSLTKSGVYWSWNK+SASFENQLS+EASD EKARKVWELSEKLVGLA Sbjct: 331 SGKRLAQVVAEPSLTKSGVYWSWNKDSASFENQLSQEASDPEKARKVWELSEKLVGLA 388
>POR_AVESA (P15904) Protochlorophyllide reductase (EC 1.3.1.33) (PCR)| (NADPH-protochlorophyllide oxidoreductase) (POR) (Fragment) Length = 313 Score = 107 bits (267), Expect = 7e-24 Identities = 52/58 (89%), Positives = 55/58 (94%) Frame = -1 Query: 408 AGXRLAQVVSEPSLTKSGVYWSWNKNSASFENQLSEEASDTEKARKVWELSEKLVGLA 235 +G RLAQVV EPSLTKSGVYWSWNK+SASFENQLS+EASD EKARKVWELSEKLVGLA Sbjct: 256 SGKRLAQVVGEPSLTKSGVYWSWNKDSASFENQLSQEASDPEKARKVWELSEKLVGLA 313
>PORA_ARATH (Q42536) Protochlorophyllide reductase A, chloroplast precursor (EC| 1.3.1.33) (PCR A) (NADPH-protochlorophyllide oxidoreductase A) (POR A) Length = 405 Score = 105 bits (262), Expect = 3e-23 Identities = 50/58 (86%), Positives = 55/58 (94%) Frame = -1 Query: 408 AGXRLAQVVSEPSLTKSGVYWSWNKNSASFENQLSEEASDTEKARKVWELSEKLVGLA 235 AG RLAQVV++PSLTKSGVYWSWNK SASFENQLS+EASD EKAR+VWE+SEKLVGLA Sbjct: 348 AGKRLAQVVADPSLTKSGVYWSWNKTSASFENQLSQEASDVEKARRVWEVSEKLVGLA 405
>PORA_HORVU (P13653) Protochlorophyllide reductase A, chloroplast precursor (EC| 1.3.1.33) (PCR A) (NADPH-protochlorophyllide oxidoreductase A) (POR A) Length = 388 Score = 105 bits (262), Expect = 3e-23 Identities = 51/58 (87%), Positives = 55/58 (94%) Frame = -1 Query: 408 AGXRLAQVVSEPSLTKSGVYWSWNKNSASFENQLSEEASDTEKARKVWELSEKLVGLA 235 +G RLAQVV+EP LTKSGVYWSWNK+SASFENQLS+EASD EKARKVWELSEKLVGLA Sbjct: 331 SGKRLAQVVAEPVLTKSGVYWSWNKDSASFENQLSQEASDPEKARKVWELSEKLVGLA 388
>PORB_ARATH (P21218) Protochlorophyllide reductase B, chloroplast precursor (EC| 1.3.1.33) (PCR B) (NADPH-protochlorophyllide oxidoreductase B) (POR B) Length = 401 Score = 105 bits (262), Expect = 3e-23 Identities = 51/58 (87%), Positives = 54/58 (93%) Frame = -1 Query: 408 AGXRLAQVVSEPSLTKSGVYWSWNKNSASFENQLSEEASDTEKARKVWELSEKLVGLA 235 +G RLAQVVS+PSLTKSGVYWSWN SASFENQLSEEASD EKARKVWE+SEKLVGLA Sbjct: 344 SGKRLAQVVSDPSLTKSGVYWSWNNASASFENQLSEEASDVEKARKVWEISEKLVGLA 401
>POR_PEA (Q01289) Protochlorophyllide reductase, chloroplast precursor (EC| 1.3.1.33) (PCR) (NADPH-protochlorophyllide oxidoreductase) (POR) Length = 399 Score = 103 bits (258), Expect = 7e-23 Identities = 50/58 (86%), Positives = 54/58 (93%) Frame = -1 Query: 408 AGXRLAQVVSEPSLTKSGVYWSWNKNSASFENQLSEEASDTEKARKVWELSEKLVGLA 235 +G RLAQVVS+PSLTKSGVYWSWN SASFENQLS+EASD EKARKVWE+SEKLVGLA Sbjct: 342 SGKRLAQVVSDPSLTKSGVYWSWNNASASFENQLSQEASDAEKARKVWEVSEKLVGLA 399
>PORC_ARATH (O48741) Protochlorophyllide reductase C, chloroplast precursor (EC| 1.3.1.33) (PCR C) (NADPH-protochlorophyllide oxidoreductase C) (POR C) Length = 401 Score = 101 bits (252), Expect = 4e-22 Identities = 48/58 (82%), Positives = 54/58 (93%) Frame = -1 Query: 408 AGXRLAQVVSEPSLTKSGVYWSWNKNSASFENQLSEEASDTEKARKVWELSEKLVGLA 235 AG RLAQVVS+PSL KSGVYWSWN NS+SFENQLS+EASD EKA+K+WE+SEKLVGLA Sbjct: 344 AGKRLAQVVSDPSLGKSGVYWSWNNNSSSFENQLSKEASDAEKAKKLWEVSEKLVGLA 401
>POR_MARPA (O80333) Protochlorophyllide reductase, chloroplast precursor (EC| 1.3.1.33) (PCR) (NADPH-protochlorophyllide oxidoreductase) (POR) Length = 458 Score = 93.2 bits (230), Expect = 1e-19 Identities = 42/57 (73%), Positives = 52/57 (91%) Frame = -1 Query: 408 AGXRLAQVVSEPSLTKSGVYWSWNKNSASFENQLSEEASDTEKARKVWELSEKLVGL 238 AG R+AQVVS+P L+KSGVYWSWNK+S SFEN+LSEEAS+ EKA+++WELSE+L GL Sbjct: 401 AGKRMAQVVSDPKLSKSGVYWSWNKDSGSFENELSEEASNPEKAKRLWELSERLSGL 457
>POR_CHLRE (Q39617) Protochlorophyllide reductase, chloroplast precursor (EC| 1.3.1.33) (PCR) (NADPH-protochlorophyllide oxidoreductase) (POR) Length = 397 Score = 79.7 bits (195), Expect = 2e-15 Identities = 34/58 (58%), Positives = 45/58 (77%) Frame = -1 Query: 408 AGXRLAQVVSEPSLTKSGVYWSWNKNSASFENQLSEEASDTEKARKVWELSEKLVGLA 235 AG RLA V+S+P L KSG YWSW+ + SF+NQ+SEE +D KA K+W++S KLVGL+ Sbjct: 339 AGRRLAAVISDPKLNKSGAYWSWSSTTGSFDNQVSEEVADDSKASKLWDISAKLVGLS 396
>POR_PLEBO (O66148) Light-dependent protochlorophyllide reductase (EC| 1.3.1.33) (PCR) (NADPH-protochlorophyllide oxidoreductase) (POR) (LPOR) Length = 322 Score = 68.2 bits (165), Expect = 5e-12 Identities = 33/62 (53%), Positives = 43/62 (69%), Gaps = 4/62 (6%) Frame = -1 Query: 408 AGXRLAQVVSEPSLTKSGVYWSWNKNSA----SFENQLSEEASDTEKARKVWELSEKLVG 241 AG R AQVV++P +SGV+WSW SF +LSE+ +D KA+++WELSEKLVG Sbjct: 261 AGERTAQVVADPEFKQSGVHWSWGNRQKEGRESFVQELSEKVTDDAKAKRMWELSEKLVG 320 Query: 240 LA 235 LA Sbjct: 321 LA 322
>POR_SYNY3 (Q59987) Light-dependent protochlorophyllide reductase (EC| 1.3.1.33) (PCR) (NADPH-protochlorophyllide oxidoreductase) (POR) (LPOR) Length = 322 Score = 62.8 bits (151), Expect = 2e-10 Identities = 31/61 (50%), Positives = 44/61 (72%), Gaps = 4/61 (6%) Frame = -1 Query: 408 AGXRLAQVVSEPSLTKSGVYWSW-NKNSA---SFENQLSEEASDTEKARKVWELSEKLVG 241 AG R+A VV++ SGV+WSW N+ A +F +LSE+ SD +KA+++W+LSEKLVG Sbjct: 261 AGERVAMVVADDKFKDSGVHWSWGNRQQAGREAFVQELSEQGSDAQKAQRMWDLSEKLVG 320 Query: 240 L 238 L Sbjct: 321 L 321
>YEL8_YEAST (P39943) Hypothetical 43.1 kDa protein in GAL83-YPT8 intergenic| region Length = 394 Score = 30.8 bits (68), Expect = 0.80 Identities = 36/117 (30%), Positives = 50/117 (42%) Frame = +2 Query: 53 PLRT*PGAPHT*PSSLCETCPTIIFPFFLLEKRSTKFRNLVRNDDRSGFETSPESRPVGD 232 P+ P PH PSSL T T I + ++ F+ L +SGF P S P Sbjct: 150 PVINIPNDPHPIPSSLSTTSITSIASVY---PSTSPFQYL-----KSGFPEDPASTPY-V 200 Query: 233 HASPTSFSLSSQTFLAFSVSLASSESWFSKDAEFLFQLQXTPDLVRLGSLTTCASLL 403 H+S +S +L L+S+ S FSK L + PD + + ASLL Sbjct: 201 HSSGSSLALG---------ELSSNSSIFSKSRRNLAAMSG-PDSLSSSKNQSSASLL 247
>RDH13_MOUSE (Q8CEE7) Retinol dehydrogenase 13 (EC 1.1.1.-)| Length = 334 Score = 30.8 bits (68), Expect = 0.80 Identities = 20/50 (40%), Positives = 26/50 (52%) Frame = -1 Query: 384 VSEPSLTKSGVYWSWNKNSASFENQLSEEASDTEKARKVWELSEKLVGLA 235 V+E SG Y+ + A S EA D E AR++W S +LVGLA Sbjct: 276 VAEELENVSGKYFDGLREKAP-----SPEAEDEEVARRLWTESARLVGLA 320
>WWOX_MOUSE (Q91WL8) WW domain-containing oxidoreductase (EC 1.1.1.-)| Length = 414 Score = 30.8 bits (68), Expect = 0.80 Identities = 13/21 (61%), Positives = 16/21 (76%) Frame = -1 Query: 306 SEEASDTEKARKVWELSEKLV 244 SEEA E AR +WELSE+L+ Sbjct: 385 SEEAQSEETARALWELSERLI 405
>RDH14_HUMAN (Q9HBH5) Retinol dehydrogenase 14 (EC 1.1.1.-) (Alcohol| dehydrogenase PAN2) Length = 336 Score = 30.8 bits (68), Expect = 0.80 Identities = 13/27 (48%), Positives = 19/27 (70%) Frame = -1 Query: 318 ENQLSEEASDTEKARKVWELSEKLVGL 238 E +L +A D ARK+W++SE +VGL Sbjct: 308 EEELLPKAMDESVARKLWDISEVMVGL 334
>RDH14_MOUSE (Q9ERI6) Retinol dehydrogenase 14 (EC 1.1.1.-) (Alcohol| dehydrogenase PAN2) Length = 334 Score = 30.0 bits (66), Expect = 1.4 Identities = 12/27 (44%), Positives = 19/27 (70%) Frame = -1 Query: 318 ENQLSEEASDTEKARKVWELSEKLVGL 238 E +L +A D ARK+W++SE +VG+ Sbjct: 306 EEELLPKAMDESVARKLWDISEVMVGI 332
>RDH13_HUMAN (Q8NBN7) Retinol dehydrogenase 13 (EC 1.1.1.-)| Length = 331 Score = 29.6 bits (65), Expect = 1.8 Identities = 19/49 (38%), Positives = 25/49 (51%) Frame = -1 Query: 384 VSEPSLTKSGVYWSWNKNSASFENQLSEEASDTEKARKVWELSEKLVGL 238 V+E SG Y+ K A + EA D E AR++W S +LVGL Sbjct: 276 VAEELADVSGKYFDGLKQKAP-----APEAEDEEVARRLWAESARLVGL 319
>TRMU_LACAC (Q5FKU0) Probable tRNA| (5-methylaminomethyl-2-thiouridylate)-methyltransferase (EC 2.1.1.61) Length = 375 Score = 29.3 bits (64), Expect = 2.3 Identities = 12/43 (27%), Positives = 23/43 (53%) Frame = +2 Query: 188 RSGFETSPESRPVGDHASPTSFSLSSQTFLAFSVSLASSESWF 316 +SG +PE + VG+HA +++ + L + S++ WF Sbjct: 218 KSGKMVTPEGKVVGEHAGLMYYTIGQRQGLGLGSTKESTDPWF 260
>MOBA_THIFE (P22898) Protein mobA (Fragment)| Length = 409 Score = 28.9 bits (63), Expect = 3.0 Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 7/82 (8%) Frame = -3 Query: 259 QREARRARMIT-DWPALRRGLKP-RSVVIPHQVAKFCASFLKQKKRKNNCRTRFAQTARL 86 Q++ARR ++ +W L RSV+ Q A+ A K +K++ R +F L Sbjct: 275 QQKARRDELMRGNWKGKGEVLNAMRSVIAAEQAAEKAALKEKHQKQREQHRQQFRPYPDL 334 Query: 85 SMWR-----PRLSPKWLQFTSE 35 W+ P L+ +W SE Sbjct: 335 EQWQRMQKSPELAEQWRHRASE 356
>CN094_HUMAN (Q9H6D7) Protein C14orf94| Length = 363 Score = 28.9 bits (63), Expect = 3.0 Identities = 13/22 (59%), Positives = 17/22 (77%) Frame = -1 Query: 306 SEEASDTEKARKVWELSEKLVG 241 S+ S+T KA KVW+L+E LVG Sbjct: 187 SDADSETVKAAKVWKLAEVLVG 208
>TRMU_LACJO (Q74JW9) Probable tRNA| (5-methylaminomethyl-2-thiouridylate)-methyltransferase (EC 2.1.1.61) Length = 375 Score = 28.5 bits (62), Expect = 4.0 Identities = 11/43 (25%), Positives = 24/43 (55%) Frame = +2 Query: 188 RSGFETSPESRPVGDHASPTSFSLSSQTFLAFSVSLASSESWF 316 +SG +P+ + VG+HA +++ ++ L + S++ WF Sbjct: 218 QSGKMVTPDGKVVGEHAGLMYYTIGQRSGLGLGSTKESTDPWF 260
>RPOC1_HUPLU (Q5SCX9) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta' subunit) (RNA polymerase beta' subunit) Length = 676 Score = 27.7 bits (60), Expect = 6.8 Identities = 16/39 (41%), Positives = 19/39 (48%) Frame = -1 Query: 228 PTGRLSGEVSNPDRSSFRTKLRNFVLLFSSKKKGKIIVG 112 PTG + GEV+ PD SF +FS K G I G Sbjct: 27 PTGEIVGEVTQPDTFSFGDNRPEKDGIFSEKIFGPIQTG 65
>YLJ2_CAEEL (P34367) Hypothetical protein C50C3.2 in chromosome III| Length = 2107 Score = 27.7 bits (60), Expect = 6.8 Identities = 12/27 (44%), Positives = 16/27 (59%) Frame = -1 Query: 342 WNKNSASFENQLSEEASDTEKARKVWE 262 WN+ SA+F+ L A+DT KV E Sbjct: 136 WNEISATFQQMLDPTATDTSNYEKVHE 162
>PTGDS_RAT (P22057) Prostaglandin-H2 D-isomerase precursor (EC 5.3.99.2)| (Lipocalin-type prostaglandin-D synthase) (Glutathione-independent PGD synthetase) (Prostaglandin-D2 synthase) (PGD2 synthase) (PGDS2) (PGDS) Length = 189 Score = 27.3 bits (59), Expect = 8.9 Identities = 14/41 (34%), Positives = 19/41 (46%) Frame = +2 Query: 281 FSVSLASSESWFSKDAEFLFQLQXTPDLVRLGSLTTCASLL 403 +S LAS+ SWF + E LF Q G L ++ L Sbjct: 44 YSAGLASNSSWFREKKELLFMCQTVVAPSTEGGLNLTSTFL 84
>YJU7_YEAST (P39526) Hypothetical 229.9 kDa protein in NUC1-NCE1 intergenic| region Length = 2014 Score = 27.3 bits (59), Expect = 8.9 Identities = 11/29 (37%), Positives = 19/29 (65%) Frame = +2 Query: 239 SPTSFSLSSQTFLAFSVSLASSESWFSKD 325 SPT SL +TF+AF ++++ ++ F D Sbjct: 1732 SPTDISLLKKTFIAFESNISNFDNMFKVD 1760
>KPB1_RAT (Q64649) Phosphorylase b kinase alpha regulatory chain, skeletal| muscle isoform (Phosphorylase kinase alpha M subunit) Length = 1242 Score = 27.3 bits (59), Expect = 8.9 Identities = 15/37 (40%), Positives = 22/37 (59%) Frame = +2 Query: 206 SPESRPVGDHASPTSFSLSSQTFLAFSVSLASSESWF 316 SPES+ G H P+S L S TFL+ + +++S F Sbjct: 1022 SPESQTSGGH--PSSIDLMSPTFLSPAACISASSGSF 1056
>PAP_CITUN (Q9ZWQ8) Plastid-lipid associated protein, chloroplast precursor| (CitPAP) Length = 323 Score = 27.3 bits (59), Expect = 8.9 Identities = 13/30 (43%), Positives = 21/30 (70%) Frame = +2 Query: 224 VGDHASPTSFSLSSQTFLAFSVSLASSESW 313 V D AS + ++SSQ L FS+S ++++SW Sbjct: 261 VQDTASSVAKTISSQPPLKFSISNSNAQSW 290 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 45,869,303 Number of Sequences: 219361 Number of extensions: 761714 Number of successful extensions: 2591 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 2534 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2584 length of database: 80,573,946 effective HSP length: 111 effective length of database: 56,224,875 effective search space used: 1349397000 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
