ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal33l10 |
|---|---|
| Clone Library Name | barley_pub |
>RSE1_ASHGO (Q753D4) Pre-mRNA-splicing factor RSE1| Length = 1288 Score = 33.5 bits (75), Expect = 0.50 Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 4/53 (7%) Frame = +1 Query: 286 ISALLPR-PRDIWVLACRASRVHRP*SVRLQDADLVVHIFD---DQMELPKKP 432 IS+ LP P DIW +A SR H+ + LQ++ +++ I +++ELP P Sbjct: 465 ISSPLPAAPLDIWTVATNGSRFHKLLFIALQESTMILKIAAGTVEELELPHNP 517
>OSBL6_HUMAN (Q9BZF3) Oxysterol-binding protein-related protein 6 (OSBP-related| protein 6) (ORP-6) Length = 934 Score = 32.3 bits (72), Expect = 1.1 Identities = 19/84 (22%), Positives = 26/84 (30%) Frame = +1 Query: 313 DIWVLACRASRVHRP*SVRLQDADLVVHIFDDQMELPKKPCKQVGTFRLRKVTNGYLANN 492 D WV R R++R + D HIF P V + N + + Sbjct: 170 DAWVSKLRHHRLYRQNEIVRSPRDASFHIFPSTSTAESSPAANVSVMDGKMQPNSFPWQS 229 Query: 493 SLPCXXXXXXXXXXXXXXTSRWLQ 564 LPC + WLQ Sbjct: 230 PLPCSNSLPATCTTGQSKVAAWLQ 253
>OSBL6_MOUSE (Q8BXR9) Oxysterol-binding protein-related protein 6 (OSBP-related| protein 6) (ORP-6) Length = 959 Score = 31.2 bits (69), Expect = 2.5 Identities = 19/84 (22%), Positives = 26/84 (30%) Frame = +1 Query: 313 DIWVLACRASRVHRP*SVRLQDADLVVHIFDDQMELPKKPCKQVGTFRLRKVTNGYLANN 492 D WV R R++R + D HIF P V + N + + Sbjct: 170 DAWVSKLRHHRLYRQNEIVRSPRDASFHIFPATSTAESSPAANVSVVDGKMQPNSFPWQS 229 Query: 493 SLPCXXXXXXXXXXXXXXTSRWLQ 564 LPC + WLQ Sbjct: 230 PLPCSNSLPATCTTGQSKVAAWLQ 253
>NU1C_MARPO (P06255) NAD(P)H-quinone oxidoreductase chain 1, chloroplast (EC| 1.6.5.-) (NAD(P)H dehydrogenase, chain 1) (NADH-plastoquinone oxidoreductase chain 1) Length = 368 Score = 30.4 bits (67), Expect = 4.2 Identities = 11/26 (42%), Positives = 19/26 (73%) Frame = +2 Query: 350 IGLRASVCRMLILLFISLMTKWSFPR 427 IG+ ++ + + LFIS+MT+W+ PR Sbjct: 310 IGIVITLVKSYLFLFISIMTRWTLPR 335
>YSR3_CAEEL (Q09951) Hypothetical protein F59B10.3| Length = 233 Score = 30.4 bits (67), Expect = 4.2 Identities = 13/45 (28%), Positives = 23/45 (51%) Frame = +2 Query: 296 CSQGPETSGFWHVEPVASIGLRASVCRMLILLFISLMTKWSFPRS 430 C+ G +G+WH ++ L C ++I+ F+ + W F RS Sbjct: 140 CADGCCKNGYWHNRYGWAVALIVIFCILVIVAFVIWLVVWLFNRS 184
>BTBD5_HUMAN (Q9NXS3) BTB/POZ domain-containing protein 5| Length = 571 Score = 30.4 bits (67), Expect = 4.2 Identities = 13/37 (35%), Positives = 23/37 (62%) Frame = -3 Query: 594 SAVVDGDLYALEPPTCSDGGKIKIYDPKEDTWKAVVS 484 +AV+DG +YA+ + ++ YDP +D+W+ V S Sbjct: 428 AAVLDGMIYAIGGYGPAHMNSVERYDPSKDSWEMVAS 464
>NU1C_SYNY3 (P26522) NAD(P)H-quinone oxidoreductase chain 1 (EC 1.6.5.-)| (NAD(P)H dehydrogenase I, chain 1) (NDH-1, chain 1) Length = 372 Score = 30.0 bits (66), Expect = 5.6 Identities = 13/40 (32%), Positives = 25/40 (62%) Frame = +2 Query: 308 PETSGFWHVEPVASIGLRASVCRMLILLFISLMTKWSFPR 427 P TS W +A++G+ +V + L+FI+++ +W+ PR Sbjct: 297 PTTS--WLQVLMAALGITMTVLKSYFLIFIAILLRWTVPR 334
>ZN513_HUMAN (Q8N8E2) Zinc finger protein 513| Length = 479 Score = 29.6 bits (65), Expect = 7.2 Identities = 19/53 (35%), Positives = 24/53 (45%) Frame = -1 Query: 386 RSASCKRTL*GLWTRLARHAKTQMSLGLGSKALMFGEWWAQRNLQPPNLLAVR 228 R A+C T G W RH K G G L E WA + PP++L+ R Sbjct: 411 RCATCAYTT-GHWDNYKRHQKVYGHGGAGGPGLSASEGWAPPH-SPPSVLSSR 461
>BTBD5_MOUSE (Q9CR40) BTB/POZ domain-containing protein 5| Length = 571 Score = 29.6 bits (65), Expect = 7.2 Identities = 13/35 (37%), Positives = 22/35 (62%) Frame = -3 Query: 594 SAVVDGDLYALEPPTCSDGGKIKIYDPKEDTWKAV 490 +AV+DG LYA+ + ++ YDP +D+W+ V Sbjct: 428 AAVLDGMLYAIGGYGPAHMNSVERYDPSKDSWEMV 462
>MCH1_KLULA (Q6CPY8) Probable transporter MCH1| Length = 479 Score = 29.3 bits (64), Expect = 9.5 Identities = 13/31 (41%), Positives = 19/31 (61%) Frame = +2 Query: 341 VASIGLRASVCRMLILLFISLMTKWSFPRSP 433 + L ++ R+L LFI L TKW++PR P Sbjct: 310 LTQFALFSTSSRLLSGLFIDLFTKWNWPRIP 340
>COBT_LEPIN (Q8EYK9) Nicotinate-nucleotide--dimethylbenzimidazole| phosphoribosyltransferase (EC 2.4.2.21) (NN:DBI PRT) (N(1)-alpha-phosphoribosyltransferase) Length = 344 Score = 29.3 bits (64), Expect = 9.5 Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 5/72 (6%) Frame = +2 Query: 266 EPTILQTSVPCSQGPETSGF-----WHVEPVASIGLRASVCRMLILLFISLMTKWSFPRS 430 EP+IL+ +V C + E W+++P+ +GLR + F L++ +F + Sbjct: 272 EPSILKNAVFCHKSVEPGHSYLLEEWNIKPLLDLGLRLGEGTGCAIAFPILISAVTFLKE 331 Query: 431 PASK*GLFDSAK 466 AS F+SAK Sbjct: 332 MAS----FESAK 339
>COBT_LEPIC (Q72M35) Nicotinate-nucleotide--dimethylbenzimidazole| phosphoribosyltransferase (EC 2.4.2.21) (NN:DBI PRT) (N(1)-alpha-phosphoribosyltransferase) Length = 344 Score = 29.3 bits (64), Expect = 9.5 Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 5/72 (6%) Frame = +2 Query: 266 EPTILQTSVPCSQGPETSGF-----WHVEPVASIGLRASVCRMLILLFISLMTKWSFPRS 430 EP+IL+ +V C + E W+++P+ +GLR + F L++ +F + Sbjct: 272 EPSILKNAVFCHKSVEPGHSYLLEEWNIKPLLDLGLRLGEGTGCAIAFPILISAVTFLKE 331 Query: 431 PASK*GLFDSAK 466 AS F+SAK Sbjct: 332 MAS----FESAK 339
>PHY2_CERPU (Q39557) Phytochrome 2| Length = 1121 Score = 29.3 bits (64), Expect = 9.5 Identities = 13/28 (46%), Positives = 16/28 (57%) Frame = -2 Query: 223 QHMKFG*IIHTFGCMYRVNHCVFCKVDY 140 Q M+ G +I TFGCM V FC + Y Sbjct: 68 QRMQRGGLIQTFGCMVAVEEPNFCVIAY 95
>NU1C_OENHO (Q9MTH7) NAD(P)H-quinone oxidoreductase chain 1, chloroplast (EC| 1.6.5.-) (NAD(P)H dehydrogenase, chain 1) (NADH-plastoquinone oxidoreductase chain 1) Length = 363 Score = 29.3 bits (64), Expect = 9.5 Identities = 10/27 (37%), Positives = 19/27 (70%) Frame = +2 Query: 347 SIGLRASVCRMLILLFISLMTKWSFPR 427 +IG+ ++ + + LFIS+ T+W+ PR Sbjct: 304 TIGIFTTLAKTYLFLFISITTRWTLPR 330
>NU1C_LOTJA (Q9BBN9) NAD(P)H-quinone oxidoreductase chain 1, chloroplast (EC| 1.6.5.-) (NAD(P)H dehydrogenase, chain 1) (NADH-plastoquinone oxidoreductase chain 1) Length = 363 Score = 29.3 bits (64), Expect = 9.5 Identities = 9/27 (33%), Positives = 20/27 (74%) Frame = +2 Query: 347 SIGLRASVCRMLILLFISLMTKWSFPR 427 +IG+ ++ + + LF+S++T+W+ PR Sbjct: 304 TIGIFITLAKTYLFLFVSIITRWTLPR 330 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 95,564,002 Number of Sequences: 219361 Number of extensions: 2024560 Number of successful extensions: 4697 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 4563 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4697 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5481822624 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
