ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal34a08 |
|---|---|
| Clone Library Name | barley_pub |
>BLC_ECOLI (P0A901) Outer membrane lipoprotein blc precursor| Length = 177 Score = 62.4 bits (150), Expect(2) = 6e-12 Identities = 43/114 (37%), Positives = 63/114 (55%), Gaps = 2/114 (1%) Frame = -2 Query: 593 YELMEDGATVHVLNETWS--KGKRDYIEGTAYKADPASDEAKLKVKFYVPPFLPIIPVVG 420 Y L +DG ++V+N+ ++ +G EG AY A A LKV F+ P + G Sbjct: 64 YSLRDDGG-LNVINKGYNPDRGMWQQSEGKAYFTG-APTRAALKVSFFGPFY-------G 114 Query: 419 DYWVLYVDDDYQYALVGEPRRKSLWILCRKTHIEEEVYNQLLEKAKEEGYDVAK 258 Y V+ +D +Y++ALV P R LWIL R I +EV ++L A EG+DV+K Sbjct: 115 GYNVIALDREYRHALVCGPDRDYLWILSRTPTISDEVKQEMLAVATREGFDVSK 168 Score = 27.7 bits (60), Expect(2) = 6e-12 Identities = 10/17 (58%), Positives = 13/17 (76%) Frame = -1 Query: 675 RYMGRWYEIASFPNFFQ 625 RY+G WYEIA F + F+ Sbjct: 38 RYLGTWYEIARFDHRFE 54
>BLC_ECO57 (P0A902) Outer membrane lipoprotein blc precursor| Length = 177 Score = 62.4 bits (150), Expect(2) = 6e-12 Identities = 43/114 (37%), Positives = 63/114 (55%), Gaps = 2/114 (1%) Frame = -2 Query: 593 YELMEDGATVHVLNETWS--KGKRDYIEGTAYKADPASDEAKLKVKFYVPPFLPIIPVVG 420 Y L +DG ++V+N+ ++ +G EG AY A A LKV F+ P + G Sbjct: 64 YSLRDDGG-LNVINKGYNPDRGMWQQSEGKAYFTG-APTRAALKVSFFGPFY-------G 114 Query: 419 DYWVLYVDDDYQYALVGEPRRKSLWILCRKTHIEEEVYNQLLEKAKEEGYDVAK 258 Y V+ +D +Y++ALV P R LWIL R I +EV ++L A EG+DV+K Sbjct: 115 GYNVIALDREYRHALVCGPDRDYLWILSRTPTISDEVKQEMLAVATREGFDVSK 168 Score = 27.7 bits (60), Expect(2) = 6e-12 Identities = 10/17 (58%), Positives = 13/17 (76%) Frame = -1 Query: 675 RYMGRWYEIASFPNFFQ 625 RY+G WYEIA F + F+ Sbjct: 38 RYLGTWYEIARFDHRFE 54
>BLC_CITFR (Q46036) Outer membrane lipoprotein blc precursor| Length = 177 Score = 61.6 bits (148), Expect(2) = 1e-11 Identities = 43/116 (37%), Positives = 66/116 (56%), Gaps = 3/116 (2%) Frame = -2 Query: 593 YELMEDGATVHVLNETWSKGKRDY--IEGTAY-KADPASDEAKLKVKFYVPPFLPIIPVV 423 Y L +DG ++V+N+ ++ + + EG AY DP++ A LKV F+ P + Sbjct: 64 YSLRDDGG-INVINKGYNPDREMWQKTEGKAYFTGDPST--AALKVSFFGPFY------- 113 Query: 422 GDYWVLYVDDDYQYALVGEPRRKSLWILCRKTHIEEEVYNQLLEKAKEEGYDVAKL 255 G Y V+ +D +Y++ALV P R LWIL R I +E+ Q+L A EG++V KL Sbjct: 114 GGYNVIALDREYRHALVCGPDRDYLWILSRTPTISDEMKQQMLAIATREGFEVNKL 169 Score = 27.7 bits (60), Expect(2) = 1e-11 Identities = 10/17 (58%), Positives = 13/17 (76%) Frame = -1 Query: 675 RYMGRWYEIASFPNFFQ 625 RY+G WYEIA F + F+ Sbjct: 38 RYLGTWYEIARFDHRFE 54
>BLC_VIBCH (Q08790) Outer membrane lipoprotein blc precursor (Protein vlp)| Length = 171 Score = 58.2 bits (139), Expect(2) = 9e-10 Identities = 38/116 (32%), Positives = 62/116 (53%), Gaps = 3/116 (2%) Frame = -2 Query: 593 YELMEDGATVHVLNETWSKGKRDY--IEGTAYKADPASDEAKLKVKFYVPPFLPIIPVVG 420 Y + DG + VLN +S+ K ++ EG AY + ++D LKV F+ P + G Sbjct: 59 YRVRNDGG-ISVLNRGYSEEKGEWKEAEGKAYFVNGSTD-GYLKVSFFGPFY-------G 109 Query: 419 DYWVLYVD-DDYQYALVGEPRRKSLWILCRKTHIEEEVYNQLLEKAKEEGYDVAKL 255 Y V +D ++Y YA V P + LW+L R +E + ++ +E +KE G+D +L Sbjct: 110 SYVVFELDRENYSYAFVSGPNTEYLWLLSRTPTVERGILDKFIEMSKERGFDTNRL 165 Score = 24.6 bits (52), Expect(2) = 9e-10 Identities = 7/16 (43%), Positives = 12/16 (75%) Frame = -1 Query: 672 YMGRWYEIASFPNFFQ 625 Y+G+WYE+A + F+ Sbjct: 34 YLGKWYEVARLDHSFE 49
>YR877_MIMIV (Q5URA7) Putative lipocalin R877 precursor| Length = 169 Score = 52.0 bits (123), Expect(2) = 9e-10 Identities = 38/115 (33%), Positives = 60/115 (52%), Gaps = 2/115 (1%) Frame = -2 Query: 593 YELMEDGATVHVLNETWSKGKRDYIEGTAYKADPASDEAKLKVKFYVPPFLPIIPVVG-- 420 Y+L+E + V N G+ + + GTA PA++ ++ F P L + G Sbjct: 58 YQLLEPNK-IQVTNNCEINGRINSVTGTAI---PAAN-TRIVSGFLTPASLMVNFGYGFS 112 Query: 419 DYWVLYVDDDYQYALVGEPRRKSLWILCRKTHIEEEVYNQLLEKAKEEGYDVAKL 255 Y V+++D++YQYA+V +LWIL R +I + YNQL+ +GYDV L Sbjct: 113 PYNVIFIDENYQYAIVSGGN-DTLWILSRFKNINQSTYNQLVTIVYNQGYDVNNL 166 Score = 30.8 bits (68), Expect(2) = 9e-10 Identities = 12/17 (70%), Positives = 12/17 (70%) Frame = -1 Query: 675 RYMGRWYEIASFPNFFQ 625 RYMG WYEIA P FQ Sbjct: 32 RYMGTWYEIARLPTSFQ 48
>APOD_RAT (P23593) Apolipoprotein D precursor (Apo-D) (ApoD)| Length = 189 Score = 41.2 bits (95), Expect(2) = 2e-05 Identities = 41/130 (31%), Positives = 59/130 (45%), Gaps = 8/130 (6%) Frame = -2 Query: 593 YELMEDGATVHVLN-ETWSKGKRDYIEGTAYKADPASDEAKLKVKFYVPPFLPIIPVVGD 417 Y LME+G + VLN E G + +EG A K S+ AKL+V+F+ +P P Sbjct: 66 YSLMENG-NIKVLNKELRPDGTLNQVEGEA-KQSNMSEPAKLEVQFF--SLMPPAP---- 117 Query: 416 YWVLYVDDDYQYALVGEPRR-------KSLWILCRKTHIEEEVYNQLLEKAKEEGYDVAK 258 YW+L D + YALV +WIL R ++ E L D+AK Sbjct: 118 YWILATDYE-SYALVYSCTTFFWFFHVDYVWILGRNPYLPPETITYLKYILTSNDIDIAK 176 Query: 257 LHKTPQSDPP 228 + Q++ P Sbjct: 177 ITTKDQANCP 186 Score = 26.9 bits (58), Expect(2) = 2e-05 Identities = 9/17 (52%), Positives = 12/17 (70%) Frame = -1 Query: 675 RYMGRWYEIASFPNFFQ 625 +Y+GRWYEI P F+ Sbjct: 41 KYLGRWYEIEKIPVSFE 57
>LAZA_SCHAM (P49291) Lazarillo protein precursor| Length = 214 Score = 34.3 bits (77), Expect(2) = 0.036 Identities = 34/118 (28%), Positives = 48/118 (40%), Gaps = 7/118 (5%) Frame = -2 Query: 569 TVHVLNETWSKGKRDYIEGTAYKADPASDEAKLKVKFYVPPFLPIIPVVGDYWVLYVD-D 393 T H +N T G A A + KL V F P P VG+YW+L D D Sbjct: 85 TTHEVNTT---------TGWAEFASELHTDGKLSVHF------PNSPSVGNYWILSTDYD 129 Query: 392 DYQ--YALVGEP----RRKSLWILCRKTHIEEEVYNQLLEKAKEEGYDVAKLHKTPQS 237 +Y ++ V P + WIL R + ++ ++ K D+ K KT QS Sbjct: 130 NYSIVWSCVKRPDSAASTEISWILLRSRNSSNMTLERVEDELKNLQLDLNKYTKTEQS 187 Score = 22.3 bits (46), Expect(2) = 0.036 Identities = 7/9 (77%), Positives = 8/9 (88%) Frame = -1 Query: 672 YMGRWYEIA 646 YMG+WYE A Sbjct: 42 YMGKWYEYA 50
>MATR3_RAT (P43244) Matrin-3 (Nuclear scaffold protein P130/MAT3)| Length = 845 Score = 33.5 bits (75), Expect = 0.60 Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 1/63 (1%) Frame = -2 Query: 380 ALVGEPRRKSLWILCRKTHIE-EEVYNQLLEKAKEEGYDVAKLHKTPQSDPPPEGDAAPT 204 A+V +K+LW R ++ E Y +L+ + G D+ K K+ + P+G +P+ Sbjct: 547 AMVDHCLKKALWFQGRCVKVDLSEKYKKLVLRIPNRGIDLLKKDKSRKRSYSPDGKESPS 606 Query: 203 DSK 195 D K Sbjct: 607 DKK 609
>MATR3_HUMAN (P43243) Matrin-3| Length = 847 Score = 33.5 bits (75), Expect = 0.60 Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 1/63 (1%) Frame = -2 Query: 380 ALVGEPRRKSLWILCRKTHIE-EEVYNQLLEKAKEEGYDVAKLHKTPQSDPPPEGDAAPT 204 A+V +K+LW R ++ E Y +L+ + G D+ K K+ + P+G +P+ Sbjct: 547 AMVDHCLKKALWFQGRCVKVDLSEKYKKLVLRIPNRGIDLLKKDKSRKRSYSPDGKESPS 606 Query: 203 DSK 195 D K Sbjct: 607 DKK 609
>MATR3_MOUSE (Q8K310) Matrin-3| Length = 846 Score = 33.5 bits (75), Expect = 0.60 Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 1/63 (1%) Frame = -2 Query: 380 ALVGEPRRKSLWILCRKTHIE-EEVYNQLLEKAKEEGYDVAKLHKTPQSDPPPEGDAAPT 204 A+V +K+LW R ++ E Y +L+ + G D+ K K+ + P+G +P+ Sbjct: 547 AMVDHCLKKALWFQGRCVKVDLSEKYKKLVLRIPNRGIDLLKKDKSRKRSYSPDGKESPS 606 Query: 203 DSK 195 D K Sbjct: 607 DKK 609
>BBP_PIEBR (P09464) Bilin-binding protein precursor (BBP)| Length = 189 Score = 25.4 bits (54), Expect(2) = 2.1 Identities = 7/13 (53%), Positives = 11/13 (84%) Frame = -1 Query: 672 YMGRWYEIASFPN 634 Y G+W+E+A +PN Sbjct: 37 YHGKWWEVAKYPN 49 Score = 25.0 bits (53), Expect(2) = 2.1 Identities = 13/29 (44%), Positives = 16/29 (55%) Frame = -2 Query: 590 ELMEDGATVHVLNETWSKGKRDYIEGTAY 504 E +G +V V N GK +IEGTAY Sbjct: 61 EYTPEGKSVKVSNYHVIHGKEYFIEGTAY 89
>C94A2_VICSA (P98188) Cytochrome P450 94A2 (EC 1.14.-.-) (P450-dependent fatty| acid omega-hydroxylase) Length = 513 Score = 30.8 bits (68), Expect = 3.9 Identities = 10/30 (33%), Positives = 19/30 (63%) Frame = -2 Query: 347 WILCRKTHIEEEVYNQLLEKAKEEGYDVAK 258 W+L + +H+E E+ ++ K++ GYD K Sbjct: 327 WLLSKHSHVENEILKEITGKSETVGYDEVK 356
>YR75_ECOLI (P21314) Hypothetical 36.8 kDa protein (ORF5) (Retron EC67)| Length = 326 Score = 30.0 bits (66), Expect = 6.7 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 4/41 (9%) Frame = +1 Query: 79 YTKIDTDKHTSWLLQY----RPTSYTDG*TYHLPKSDLNHQ 189 YT+ D T W +QY +P +T G +HL + D+N + Sbjct: 133 YTRRGLDLDTYWFVQYGMTTQPYQFTKGSIFHLLEPDINQE 173
>C94A1_VICSA (O81117) Cytochrome P450 94A1 (EC 1.14.-.-) (P450-dependent fatty| acid omega-hydroxylase) Length = 514 Score = 29.6 bits (65), Expect = 8.7 Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 8/61 (13%) Frame = -2 Query: 347 WILCRKTHIEEEVYNQLLEKA--------KEEGYDVAKLHKTPQSDPPPEGDAAPTDSKG 192 W+L + +EEE+ N+L +K+ KE Y A L ++ + PP P DSK Sbjct: 329 WLLWKNPRVEEEIVNELSKKSELMVYDEVKEMVYTHAALSESMRLYPP-----VPMDSKE 383 Query: 191 A 189 A Sbjct: 384 A 384
>Y1163_AQUAE (O67227) Hypothetical protein aq_1163| Length = 125 Score = 29.6 bits (65), Expect = 8.7 Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 3/57 (5%) Frame = -2 Query: 428 VVGDYWVLYVDDDYQYALVGE---PRRKSLWILCRKTHIEEEVYNQLLEKAKEEGYD 267 V G+ W++YVD +A + E PR ++ W R I E + ++EE YD Sbjct: 61 VQGEGWIVYVDPFNNFADIYEANKPRYRNRWNQERPYDISETRFRVGFFPSREEAYD 117
>AT1B4_HUMAN (Q9UN42) X/potassium-transporting ATPase beta-m chain (X,K-ATPase| beta-m subunit) Length = 357 Score = 29.6 bits (65), Expect = 8.7 Identities = 18/71 (25%), Positives = 30/71 (42%) Frame = -2 Query: 389 YQYALVGEPRRKSLWILCRKTHIEEEVYNQLLEKAKEEGYDVAKLHKTPQSDPPPEGDAA 210 Y+Y L ++ + EEE ++ K++EE + K + + EG Sbjct: 17 YRYRLDDPDEANQNYLADEEEEAEEEARVTVVPKSEEEEEEEEKEEEEEEEKEEEEGQGQ 76 Query: 209 PTDSKGAWWFK 177 PT + AWW K Sbjct: 77 PTGN--AWWQK 85 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 68,452,681 Number of Sequences: 219361 Number of extensions: 1176248 Number of successful extensions: 4360 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 4117 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4358 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6598423128 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
