ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal34a05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC093255.2| Homo sapiens chromosome 5 clone RP11-181G6, compl... 40 1.8
2gb|AC137842.8| Mus musculus chromosome 15, clone RP23-91M6, comp... 38 7.3
3gb|AC115735.8| Mus musculus chromosome 15, clone RP23-470I4, com... 38 7.3
4emb|AJ293568.1|YDI293568 Yaba-like disease virus (YLDV), complet... 38 7.3
5gb|AC066616.7| Homo sapiens chromosome 15 clone RP11-925D8 map 1... 38 7.3
6gb|DQ411844.1| Hartmannella vermiformis msh2 mRNA, partial cds 38 7.3
7gb|AC110761.3| Homo sapiens BAC clone RP11-45C13 from 4, complet... 38 7.3

>gb|AC093255.2| Homo sapiens chromosome 5 clone RP11-181G6, complete sequence
          Length = 95597

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 84    gtctcaagcacttgttaaat 103
             ||||||||||||||||||||
Sbjct: 47766 gtctcaagcacttgttaaat 47747



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>gb|AC137842.8| Mus musculus chromosome 15, clone RP23-91M6, complete sequence
          Length = 230609

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 52     ccactagcaccatgtatgcagat 74
              |||||||||||||| ||||||||
Sbjct: 221113 ccactagcaccatggatgcagat 221091



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>gb|AC115735.8| Mus musculus chromosome 15, clone RP23-470I4, complete sequence
          Length = 177117

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 52    ccactagcaccatgtatgcagat 74
             |||||||||||||| ||||||||
Sbjct: 30495 ccactagcaccatggatgcagat 30473



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>emb|AJ293568.1|YDI293568 Yaba-like disease virus (YLDV), complete genome
          Length = 144575

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 34   aacaactactaacggtgtc 52
            |||||||||||||||||||
Sbjct: 5943 aacaactactaacggtgtc 5961



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>gb|AC066616.7| Homo sapiens chromosome 15 clone RP11-925D8 map 15q21.3, complete
             sequence
          Length = 209779

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 79    aatacgtctcaagcacttg 97
             |||||||||||||||||||
Sbjct: 83374 aatacgtctcaagcacttg 83392



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>gb|DQ411844.1| Hartmannella vermiformis msh2 mRNA, partial cds
          Length = 351

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 79  aatacgtctcaagcacttg 97
           |||||||||||||||||||
Sbjct: 192 aatacgtctcaagcacttg 174



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>gb|AC110761.3| Homo sapiens BAC clone RP11-45C13 from 4, complete sequence
          Length = 153458

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 54    actagcaccatgtatgcag 72
             |||||||||||||||||||
Sbjct: 58942 actagcaccatgtatgcag 58924


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 563,953
Number of Sequences: 3902068
Number of extensions: 563953
Number of successful extensions: 34689
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 34681
Number of HSP's gapped (non-prelim): 8
length of query: 151
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 130
effective length of database: 17,151,101,840
effective search space: 2229643239200
effective search space used: 2229643239200
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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