ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal33k02 |
|---|---|
| Clone Library Name | barley_pub |
>CREA_GIBFU (O94131) DNA-binding protein creA (Carbon catabolite repressor)| Length = 420 Score = 32.0 bits (71), Expect = 0.42 Identities = 17/47 (36%), Positives = 24/47 (51%) Frame = +1 Query: 55 LTAPPEHTHHNHTHKPGRGQTVHAASARLRQAEHTAEARSHYSKPRS 195 LTAPP H++ NH H P G +H++ L RSH ++ S Sbjct: 215 LTAPPHHSN-NHRHHPYFGHGMHSSRGHLPTLSSYHMGRSHSNEDPS 260
>ZAP1_YEAST (P47043) Zinc-responsive transcriptional regulator ZAP1| Length = 880 Score = 32.0 bits (71), Expect = 0.42 Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 3/71 (4%) Frame = +1 Query: 16 HTIKGSHHNTCTPLTAPPEHTHHN---HTHKPGRGQTVHAASARLRQAEHTAEARSHYSK 186 + + GS++NT + +H HH H+HKP R V+ ++ + A TA+ ++ Sbjct: 442 NNLNGSNNNTAGATSTDHQHHHHRIQFHSHKPNRNNIVN--NSGISAANTTADLTNNDLN 499 Query: 187 PRSTMRPSYRR 219 + SY R Sbjct: 500 DLISREYSYER 510
>OPA_DROME (P39768) Pair-rule protein odd-paired| Length = 609 Score = 31.6 bits (70), Expect = 0.55 Identities = 14/35 (40%), Positives = 16/35 (45%) Frame = +1 Query: 52 PLTAPPEHTHHNHTHKPGRGQTVHAASARLRQAEH 156 PL PP H HH H H+ AASA + H Sbjct: 522 PLGPPPSHHHHPHHHQAAPSPGAAAASASMLHHNH 556
>YH17_YEAST (P38898) Hypothetical 17.1 kDa protein in PUR5 3'region| Length = 153 Score = 30.0 bits (66), Expect = 1.6 Identities = 13/27 (48%), Positives = 15/27 (55%) Frame = +1 Query: 13 PHTIKGSHHNTCTPLTAPPEHTHHNHT 93 PHT +H +T TP P HT H HT Sbjct: 30 PHTPTHTHPHTPTPTPHPHPHTPHPHT 56
>ASR_ECOLI (P36560) Acid shock protein precursor| Length = 102 Score = 30.0 bits (66), Expect = 1.6 Identities = 18/61 (29%), Positives = 25/61 (40%), Gaps = 7/61 (11%) Frame = +1 Query: 49 TPLTAPPEHTHHNHTHKPGRGQTVHAA-------SARLRQAEHTAEARSHYSKPRSTMRP 207 T AP + THH HK Q AA A + E A+A ++K S +P Sbjct: 34 TTKAAPAKTTHHKKQHKAAPAQKAQAAKKHHKNTKAEQKAPEQKAQAAKKHAKKHSHQQP 93 Query: 208 S 210 + Sbjct: 94 A 94
>ASR_ECOL6 (Q8CW15) Acid shock protein precursor| Length = 102 Score = 30.0 bits (66), Expect = 1.6 Identities = 18/61 (29%), Positives = 25/61 (40%), Gaps = 7/61 (11%) Frame = +1 Query: 49 TPLTAPPEHTHHNHTHKPGRGQTVHA-------ASARLRQAEHTAEARSHYSKPRSTMRP 207 T AP + THH HK Q A A A + E A+A ++K S +P Sbjct: 34 TTKAAPAKTTHHKKQHKAAPAQKAQAAKKHHKNAKAEQKAPEQKAQAAKKHAKKHSHQQP 93 Query: 208 S 210 + Sbjct: 94 A 94
>ASR_ECO57 (Q8X783) Acid shock protein precursor| Length = 102 Score = 30.0 bits (66), Expect = 1.6 Identities = 18/61 (29%), Positives = 25/61 (40%), Gaps = 7/61 (11%) Frame = +1 Query: 49 TPLTAPPEHTHHNHTHKPGRGQTVHAA-------SARLRQAEHTAEARSHYSKPRSTMRP 207 T AP + THH HK Q AA A + E A+A ++K S +P Sbjct: 34 TTKAAPAKTTHHKKQHKAAPAQKAQAAKKHHKNTKAEQKAPEQKAQAAKKHAKKHSHQQP 93 Query: 208 S 210 + Sbjct: 94 A 94
>FOXGB_CHICK (Q90964) Forkhead box protein G1B (Forkhead-related protein FKHL1)| (Transcription factor BF-1) (Brain factor 1) (BF1) (CBF-1) (Proto-oncogene C-QIN) (N-62-5) (CEQ 3-1) Length = 451 Score = 29.6 bits (65), Expect = 2.1 Identities = 16/44 (36%), Positives = 20/44 (45%) Frame = +1 Query: 31 SHHNTCTPLTAPPEHTHHNHTHKPGRGQTVHAASARLRQAEHTA 162 SHHN+ P H HH+H H P Q A+A + E A Sbjct: 37 SHHNS-----HHPHHHHHHHHHHPPPPQQPQRAAAAEEEDEEKA 75
>QIN_AVIS3 (P56260) Transforming protein Qin (Oncogene Qin)| Length = 387 Score = 29.6 bits (65), Expect = 2.1 Identities = 16/44 (36%), Positives = 20/44 (45%) Frame = +1 Query: 31 SHHNTCTPLTAPPEHTHHNHTHKPGRGQTVHAASARLRQAEHTA 162 SHHN+ P H HH+H H P Q A+A + E A Sbjct: 37 SHHNS-----HHPHHHHHHHHHHPPPPQQPQRAAAAEEEDEEKA 75
>CAC1A_RABIT (P27884) Voltage-dependent P/Q-type calcium channel alpha-1A subunit| (Voltage-gated calcium channel alpha subunit Cav2.1) (Calcium channel, L type, alpha-1 polypeptide isoform 4) (Brain calcium channel I) (BI) Length = 2424 Score = 29.6 bits (65), Expect = 2.1 Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 2/35 (5%) Frame = +1 Query: 73 HTHHNHTHKPGR--GQTVHAASARLRQAEHTAEAR 171 H HH+H H PGR G+ SAR R+ A R Sbjct: 2219 HHHHHHHHHPGRGPGRVSPGVSARRRRRGPVARVR 2253
>FRAS1_MOUSE (Q80T14) Extracellular matrix protein FRAS1 precursor| Length = 4010 Score = 29.3 bits (64), Expect = 2.7 Identities = 13/33 (39%), Positives = 15/33 (45%), Gaps = 5/33 (15%) Frame = -1 Query: 189 GFGIMRASLCCVLCLSQARTC-----CVDCLPP 106 G G +A C+ C Q TC C CLPP Sbjct: 454 GLGFYQAGSLCLACQPQCSTCTNGLECSSCLPP 486
>IST2_YEAST (P38250) Increased sodium tolerance protein 2| Length = 946 Score = 28.9 bits (63), Expect = 3.6 Identities = 14/54 (25%), Positives = 24/54 (44%) Frame = +1 Query: 31 SHHNTCTPLTAPPEHTHHNHTHKPGRGQTVHAASARLRQAEHTAEARSHYSKPR 192 S++NT T T HH+H H R V + + E ++ + + KP+ Sbjct: 880 SNNNTTTTTTTDATQPHHHHHHHRHRDAGVKNVTNNSKTTESSSSSSAAKEKPK 933
>TBX19_MOUSE (Q99ME7) T-box transcription factor TBX19 (T-box protein 19) (T-box| factor, pituitary) Length = 446 Score = 28.9 bits (63), Expect = 3.6 Identities = 12/29 (41%), Positives = 14/29 (48%) Frame = +1 Query: 19 TIKGSHHNTCTPLTAPPEHTHHNHTHKPG 105 T S++ TPL P HTHH H G Sbjct: 254 TAANSNYQYATPLPLPAPHTHHGCEHYAG 282
>MTP1_ARATH (Q9ZT63) Metal tolerance protein 1 (AtMTP1) (Zinc transporter| ZAT-1) (ZAT1p) [Contains: Metal tolerance protein 1 short form] Length = 398 Score = 28.9 bits (63), Expect = 3.6 Identities = 13/34 (38%), Positives = 16/34 (47%), Gaps = 2/34 (5%) Frame = +1 Query: 34 HHNTCTPLTAPPEHTHHNHT--HKPGRGQTVHAA 129 HHN +T H HH+H H G G+ H A Sbjct: 198 HHNHSHGVTVTTHHHHHDHEHGHSHGHGEDKHHA 231
>HYCG_ECOLI (P16433) Formate hydrogenlyase subunit 7 (FHL subunit 7)| (Hydrogenase-3 component G) Length = 255 Score = 28.9 bits (63), Expect = 3.6 Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 1/43 (2%) Frame = -2 Query: 161 AVCSACRKRALAAWTVCPLPGLCV*LW-CVCSGGAVKGVHVLW 36 AV A R AL AW P P +C+ C SGG ++ +W Sbjct: 87 AVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVW 129
>FRAS1_HUMAN (Q86XX4) Extracellular matrix protein FRAS1 precursor| Length = 4007 Score = 28.5 bits (62), Expect = 4.6 Identities = 13/39 (33%), Positives = 15/39 (38%), Gaps = 5/39 (12%) Frame = -1 Query: 207 WAHGRSGFGIMRASLCCVLCLSQARTC-----CVDCLPP 106 W G G +A C+ C Q TC C C PP Sbjct: 449 WCVHSCGLGFYQAGSLCLACQPQCSTCTSGLECSSCQPP 487
>VE1_BPV2 (P11298) Replication protein E1 (EC 3.6.1.-) (ATP-dependent| helicase E1) Length = 604 Score = 28.5 bits (62), Expect = 4.6 Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 1/52 (1%) Frame = +3 Query: 39 QHMHTLDCTTRT-HTPQSHTQARQGADSPRSKCALATGRAHSRGSLALFQTQ 191 Q H DC T H ++ TQA +++C LATG + L F Q Sbjct: 353 QAKHVKDCATMVRHYLRAETQALSMPAYIKTRCKLATGEGSWKSILTFFNYQ 404
>VE1_BPV1 (P03116) Replication protein E1| Length = 605 Score = 28.5 bits (62), Expect = 4.6 Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 1/52 (1%) Frame = +3 Query: 39 QHMHTLDCTTRT-HTPQSHTQARQGADSPRSKCALATGRAHSRGSLALFQTQ 191 Q H DC T H ++ TQA +++C LATG + L F Q Sbjct: 354 QAKHVKDCATMVRHYLRAETQALSMPAYIKARCKLATGEGSWKSILTFFNYQ 405
>SI1L2_MOUSE (Q80TE4) Signal-induced proliferation-associated 1-like protein 2| Length = 1722 Score = 28.1 bits (61), Expect = 6.1 Identities = 14/48 (29%), Positives = 22/48 (45%) Frame = +3 Query: 87 SHTQARQGADSPRSKCALATGRAHSRGSLALFQTQIDHAPKLQTRPYY 230 SH+ Q + SP + C+ +TG S + AP T+PY+ Sbjct: 1341 SHSSGSQHSGSPSAHCSKSTGSLDSSKGYIVTHGGGQQAPGAVTKPYH 1388
>PVG4_SCHPO (Q9HGP0) MADS-box transcription factor pvg4 (Pyruvylated| Gal-beta-1,3-epitope synthesis protein 4) (PvGal synthesis protein 4) (MADS-box transcription factor 2) Length = 372 Score = 28.1 bits (61), Expect = 6.1 Identities = 11/30 (36%), Positives = 14/30 (46%) Frame = +1 Query: 13 PHTIKGSHHNTCTPLTAPPEHTHHNHTHKP 102 P + +H +C P PP HH HT P Sbjct: 149 PEPLSSNHVRSCPPF--PPTQHHHPHTRPP 176
>GLUQ_CORDI (Q6NJY9) Glutamyl-Q tRNA(Asp) synthetase (EC 6.1.1.-) (Glu-Q-RSs)| Length = 297 Score = 28.1 bits (61), Expect = 6.1 Identities = 18/57 (31%), Positives = 22/57 (38%) Frame = +1 Query: 13 PHTIKGSHHNTCTPLTAPPEHTHHNHTHKPGRGQTVHAASARLRQAEHTAEARSHYS 183 PHTI G + TC LT K GR + RLR T R +Y+ Sbjct: 111 PHTIPGQYPGTCRNLTEVQREERRQALAKQGR-----VPALRLRADVPTWHVRDYYA 162
>GSH2_HUMAN (Q9BZM3) Homeobox protein GSH-2| Length = 304 Score = 27.7 bits (60), Expect = 7.9 Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 1/39 (2%) Frame = +1 Query: 64 PPEHTHHNH-THKPGRGQTVHAASARLRQAEHTAEARSH 177 PP+H HH+H +PG AA+A A + H Sbjct: 131 PPQHHHHHHQPQQPGSAAAAAAAAAAAAAAAALGHPQHH 169
>NCBP2_ASHGO (Q754W7) Nuclear cap-binding protein subunit 2| Length = 218 Score = 27.7 bits (60), Expect = 7.9 Identities = 14/35 (40%), Positives = 19/35 (54%) Frame = +1 Query: 73 HTHHNHTHKPGRGQTVHAASARLRQAEHTAEARSH 177 H HH+H H GQ HAA+A++ E E S+ Sbjct: 181 HHHHHHGHHHHHGQP-HAAAAKVNPMEVEEELDSY 214
>FILA_HUMAN (P20930) Filaggrin| Length = 4061 Score = 27.7 bits (60), Expect = 7.9 Identities = 16/57 (28%), Positives = 24/57 (42%), Gaps = 6/57 (10%) Frame = +1 Query: 25 KGSHHNTCTPLTAPPEHTHHNHTHKPGRGQTVH------AASARLRQAEHTAEARSH 177 +GSHH + +HH+HT GR H +AS + R E + + H Sbjct: 528 QGSHHEQSVNRSGH-SGSHHSHTTSQGRSDASHGQSGSRSASRQTRNEEQSGDGTRH 583
>DLX2_MOUSE (P40764) Homeobox protein DLX-2 (Homeobox protein TES-1)| Length = 332 Score = 27.7 bits (60), Expect = 7.9 Identities = 11/27 (40%), Positives = 13/27 (48%) Frame = +1 Query: 52 PLTAPPEHTHHNHTHKPGRGQTVHAAS 132 P P H HH+H H G G V A + Sbjct: 304 PSQTPQAHHHHHHHHHAGGGAPVSAGT 330
>GSH2_MOUSE (P31316) Homeobox protein GSH-2| Length = 305 Score = 27.7 bits (60), Expect = 7.9 Identities = 17/55 (30%), Positives = 24/55 (43%) Frame = +1 Query: 13 PHTIKGSHHNTCTPLTAPPEHTHHNHTHKPGRGQTVHAASARLRQAEHTAEARSH 177 P HH+ PP+H HH+H +P + + AA+A A A A H Sbjct: 120 PRVSHAHHHHH------PPQHHHHHH--QPQQPGSAAAAAAAAAAAAAAAAALGH 166
>TOP1_DROME (P30189) DNA topoisomerase 1 (EC 5.99.1.2) (DNA topoisomerase I)| Length = 972 Score = 27.7 bits (60), Expect = 7.9 Identities = 13/49 (26%), Positives = 21/49 (42%) Frame = +1 Query: 73 HTHHNHTHKPGRGQTVHAASARLRQAEHTAEARSHYSKPRSTMRPSYRR 219 H HH+H H + H +S++ + + E +S S S S R Sbjct: 32 HGHHHHHHSSSSSSSKHKSSSKDKHRDREREHKSSNSSSSSKEHKSSSR 80
>KNOB_PLAFN (P06719) Knob-associated histidine-rich protein precursor (KAHRP)| Length = 657 Score = 27.7 bits (60), Expect = 7.9 Identities = 16/54 (29%), Positives = 21/54 (38%), Gaps = 1/54 (1%) Frame = +1 Query: 34 HHNTCTPLTAPPE-HTHHNHTHKPGRGQTVHAASARLRQAEHTAEARSHYSKPR 192 HH P AP + H HH+H + VH QA H H+ P+ Sbjct: 72 HHQHQAPHQAPHQAHHHHHHGEVNHQAPQVHQQVHGQDQAHHHHHHHHHHLHPQ 125
>DYRK2_DROME (Q9V3D5) Dual specificity tyrosine-phosphorylation-regulated kinase| 2 (EC 2.7.12.1) (dDyrk2) (Protein smell impaired at 35A) Length = 722 Score = 27.7 bits (60), Expect = 7.9 Identities = 11/45 (24%), Positives = 22/45 (48%) Frame = +1 Query: 31 SHHNTCTPLTAPPEHTHHNHTHKPGRGQTVHAASARLRQAEHTAE 165 +HHN T A H HH+H + + + A++ + ++ T + Sbjct: 668 THHNASTATIATTTHHHHHHGGQQQQQSSSGASTMAMSHSQSTGD 712 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.316 0.126 0.405 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 37,749,445 Number of Sequences: 219361 Number of extensions: 693659 Number of successful extensions: 2992 Number of sequences better than 10.0: 29 Number of HSP's better than 10.0 without gapping: 2651 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2893 length of database: 80,573,946 effective HSP length: 68 effective length of database: 65,657,398 effective search space used: 1575777552 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
