>SIAH2_HUMAN (O43255) Ubiquitin ligase SIAH2 (EC 6.3.2.-) (Seven in absentia|
           homolog 2) (Siah-2) (hSiah2)
          Length = 324

 Score = 38.5 bits (88), Expect = 0.019
 Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
 Frame = +3

Query: 93  ANRPAKKNPHPQGTKKRREASPGQTL*VSTANPPSLLM--AGALVDGDGGRPVEHAGAAA 266
           AN+P  K P PQ       A+P     +S A P S  +  A A++ G GG     AG  +
Sbjct: 11  ANKPCSKQPPPQPQHTPSPAAPPAAATISAAGPGSSAVPAAAAVISGPGGG--GGAGPVS 68

Query: 267 PRHHQV 284
           P+HH++
Sbjct: 69  PQHHEL 74

>VIT_ICHUN (Q91062) Vitellogenin precursor (VTG) [Contains: Lipovitellin LV-1N;|
            Lipovitellin LV-1C; Lipovitellin LV-2]
          Length = 1823

 Score = 34.3 bits (77), Expect = 0.36
 Identities = 38/146 (26%), Positives = 58/146 (39%)
 Frame = -2

Query: 659  TSSSFSCDSDDEAQFSDGEDQFVPASPPARRLNSDGVYDLSSIKAELSVKKGGLSKYYDG 480
            +SSS S  S     FS  +        PAR  +S    D SS  +  S      S     
Sbjct: 1223 SSSSSSSSSSASKSFSTVKPPMTRKPRPARSSSSSSSSDSSSSSSSSSSSSSSSSSSSSS 1282

Query: 479  KSQSFACMSEVRCLEDLPKKRPYNKKMKPCRSHVEIDGDQRACPAPGSNNSSKVVAKPTS 300
             S+S +   E   ++D+ +   YN K  P R   +    +R  PA  S++SS   +  +S
Sbjct: 1283 SSESKSL--EWLAVKDVNQSAFYNFKYVPQR---KPQTSRRHTPASSSSSSSSSSSSSSS 1337

Query: 299  GSSCANLMMARSGSSSMLYRPPAIPV 222
             SS  + M   + S     +P  + V
Sbjct: 1338 SSSSDSDMTVSAESFEKHSKPKVVIV 1363

>PEA3_BRARE (Q9PUQ1) ETS domain-containing transcription factor PEA3|
          Length = 494

 Score = 32.7 bits (73), Expect = 1.1
 Identities = 46/162 (28%), Positives = 65/162 (40%), Gaps = 4/162 (2%)
 Frame = -2

Query: 683 QEDEDLFETSSSFSCDSDDEAQFSDGEDQFVP--ASPPARRLNSDGVYDLSSIKAELSVK 510
           QE EDLF+  S        EAQ  D ++QFVP   S  +   +S  V     IK E    
Sbjct: 46  QESEDLFQDLSQLQETWLTEAQVPDSDEQFVPDFHSENSVAFHSPPV----KIKKEPQSP 101

Query: 509 KGGLSKYYDGKSQSFACMSEVRCLEDLPKKRPYNKKMKPCRSHVE-IDGDQRACPAPGSN 333
               S+    K QSF+  +  +CL        Y    +  R+ V    G + +CPA   +
Sbjct: 102 GSDPSQSCSHK-QSFSYPNGEQCL--------YASAYEQKRAAVAGAGGSKSSCPATPMS 152

Query: 332 NSSKVVAKPTSGS-SCANLMMARSGSSSMLYRPPAIPVNKSA 210
                  KPT G+   +  M   S S S      + P+N S+
Sbjct: 153 PMQHYSPKPTVGTRQESGYMNPPSSSQSHACHSHSYPMNPSS 194

>SUHW4_HUMAN (Q6N043) Suppressor of hairy wing homolog 4|
          Length = 979

 Score = 32.3 bits (72), Expect = 1.4
 Identities = 37/120 (30%), Positives = 48/120 (40%), Gaps = 8/120 (6%)
 Frame = -2

Query: 626 EAQFSDGEDQFVPASPPARRLNSDGVYDLSSIKAELSVKKG-GLSKYYDGKSQSFACMSE 450
           E++ SD      P S P    NS  V    S +    + +  GLS Y  G + S A MSE
Sbjct: 111 ESRSSDSSVIVQPFSKPGYITNSSRVVSNKSSELLFDLTQDTGLSHYQGGPTLSMAGMSE 170

Query: 449 VRCLEDLPKKRPYN----KKMKPCRSHVEIDGDQRACP---APGSNNSSKVVAKPTSGSS 291
              L   P     N    KK KP  S V         P   +P   +S  ++AK T+ SS
Sbjct: 171 SSFLSKRPSTSEVNNVNPKKPKPSES-VSGANSSAVLPSVKSPSVTSSQAMLAKGTNTSS 229

>PERC_AEDAE (P82600) Chorion peroxidase precursor (EC 1.11.1.7) [Contains:|
           Chorion peroxidase light chain; Chorion peroxidase heavy
           chain]
          Length = 791

 Score = 32.3 bits (72), Expect = 1.4
 Identities = 19/71 (26%), Positives = 34/71 (47%)
 Frame = -2

Query: 485 DGKSQSFACMSEVRCLEDLPKKRPYNKKMKPCRSHVEIDGDQRACPAPGSNNSSKVVAKP 306
           D   Q+  CM+ + C+ D  KK      +KPC +   +DG    CP+   N +S  V + 
Sbjct: 51  DACEQNEVCMAPIECILDAKKK----AILKPCSTVPSVDG--ICCPSSEHNGTSSRVQQS 104

Query: 305 TSGSSCANLMM 273
           +   +  +L++
Sbjct: 105 SEEHAADHLVL 115

>VE1_HPV09 (Q05111) Replication protein E1 (EC 3.6.1.-) (ATP-dependent|
           helicase E1)
          Length = 605

 Score = 32.0 bits (71), Expect = 1.8
 Identities = 17/69 (24%), Positives = 32/69 (46%)
 Frame = -2

Query: 668 LFETSSSFSCDSDDEAQFSDGEDQFVPASPPARRLNSDGVYDLSSIKAELSVKKGGLSKY 489
           LFE  S   C  ++    S+ + + VPA+PP     + G+  +  +    +VK   ++K+
Sbjct: 111 LFEQDSGLECSVNEAEDLSETQVEEVPANPPTTAQGTKGLGIVKDLLKHSNVKAVLMAKF 170

Query: 488 YDGKSQSFA 462
            +     FA
Sbjct: 171 KEAFGVGFA 179

>SIAH2_RAT (Q8R4T2) Ubiquitin ligase SIAH2 (EC 6.3.2.-) (Seven in absentia|
           homolog 2) (Siah-2)
          Length = 325

 Score = 32.0 bits (71), Expect = 1.8
 Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
 Frame = +3

Query: 93  ANRPAKKNPHPQGTKKRRE-ASPGQTL*VSTANPPSLLM--AGALVDGDGGRPVEHAGAA 263
           AN+P  K P P  T      A+P     +S A P S  +  A A++ G G      AG  
Sbjct: 11  ANKPCSKQPPPPQTPHAPSPAAPPAAATISAAGPGSSAVPAAAAVISGPGAGG--GAGPV 68

Query: 264 APRHHQV 284
           +P+HH++
Sbjct: 69  SPQHHEL 75

>VE2_RHPV1 (P22156) Regulatory protein E2|
          Length = 366

 Score = 31.2 bits (69), Expect = 3.1
 Identities = 19/68 (27%), Positives = 28/68 (41%)
 Frame = -2

Query: 656 SSSFSCDSDDEAQFSDGEDQFVPASPPARRLNSDGVYDLSSIKAELSVKKGGLSKYYDGK 477
           SS+  CD     +   G     P+ PPA     + V+   + +   S   G   +  DGK
Sbjct: 207 SSATHCDKLPTVEIVSGLQHINPSPPPANPSAKENVWSSPAKRVRRSDSGGDPVRALDGK 266

Query: 476 SQSFACMS 453
           S+S  C S
Sbjct: 267 SRSVLCGS 274

>HPS4_HUMAN (Q9NQG7) Hermansky-Pudlak syndrome 4 protein (Light-ear protein|
           homolog)
          Length = 708

 Score = 30.8 bits (68), Expect = 4.0
 Identities = 17/70 (24%), Positives = 33/70 (47%), Gaps = 7/70 (10%)
 Frame = -2

Query: 551 VYDLSSIKAELSVKKGGLSKYYDGKS----QSFAC---MSEVRCLEDLPKKRPYNKKMKP 393
           +YD S +K E    + G+  +Y  ++    Q   C      VRC+ D+    P   +++ 
Sbjct: 20  LYDGSKVKEEGDPTRAGICYFYPSQTLLDQQELLCGQIAGVVRCVSDISDSPPTLVRLRK 79

Query: 392 CRSHVEIDGD 363
            +  +++DGD
Sbjct: 80  LKFAIKVDGD 89

>RS14B_STRCO (Q9X8K9) 30S ribosomal protein S14-2|
          Length = 101

 Score = 30.8 bits (68), Expect = 4.0
 Identities = 24/63 (38%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
 Frame = -1

Query: 318 SRQADLRELLRKPDD-GAERQLQHALQASRHPRQQERLPSVGREGSRLRLRVSVQGWLRV 142
           +R+A+L+E+LR+P    AER     L A R  R+Q R  S  R  +R ++    +G+LRV
Sbjct: 22  ARRAELKEVLRRPSSTEAER-----LAAQRELRRQPRDASPTRVRNRDQIDGRPRGYLRV 76

Query: 141 SSL 133
             L
Sbjct: 77  FGL 79

>SERI1_BOMMO (P07856) Sericin 1 precursor (Silk gum protein)|
          Length = 1186

 Score = 30.4 bits (67), Expect = 5.2
 Identities = 29/120 (24%), Positives = 49/120 (40%), Gaps = 1/120 (0%)
 Frame = -2

Query: 677 DEDLFETSSSFSCDSDDEAQFSDGEDQFVPASPPAR-RLNSDGVYDLSSIKAELSVKKGG 501
           D  L E +  +  D +  A  SD  D+   A   A+   N+DG Y +S+ ++  +  +  
Sbjct: 115 DSSLRERNVHYVSDGEAVAASSDARDENRSAQQNAQANWNADGSYGVSADRSGSASSRRR 174

Query: 500 LSKYYDGKSQSFACMSEVRCLEDLPKKRPYNKKMKPCRSHVEIDGDQRACPAPGSNNSSK 321
            + YY  K  + A   + R          YN+         + DG + A  +  S +SSK
Sbjct: 175 QANYYSDKDITAASKDDSRADSSRRSNAYYNR---------DSDGSESAGLSDRSASSSK 225

>LY10_HUMAN (Q13342) Nuclear body protein SP140 (Nuclear autoantigen Sp-140)|
           (Speckled 140 kDa) (LYSp100 protein)
           (Lymphoid-restricted homolog of Sp100)
          Length = 882

 Score = 30.4 bits (67), Expect = 5.2
 Identities = 22/84 (26%), Positives = 35/84 (41%)
 Frame = -2

Query: 458 MSEVRCLEDLPKKRPYNKKMKPCRSHVEIDGDQRACPAPGSNNSSKVVAKPTSGSSCANL 279
           M+ V  LED P+  PY K+      H   + D  A P    ++S++      S  SC  L
Sbjct: 145 MNNVNDLEDRPRLLPYGKQENSNACH---EMDDIAVPQEALSSSAR-CEPGFSSESCEQL 200

Query: 278 MMARSGSSSMLYRPPAIPVNKSAC 207
            + ++G       P  +P    +C
Sbjct: 201 ALPKAGGGDAEDAPSLLPGGGVSC 224

>MUC5B_HUMAN (Q9HC84) Mucin-5B precursor (Mucin 5 subtype B, tracheobronchial)|
            (High molecular weight salivary mucin MG1) (Sublingual
            gland mucin)
          Length = 5703

 Score = 29.6 bits (65), Expect = 9.0
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = -2

Query: 392  CRSHVEIDGDQRACPAPGSNNSSKVVAKPTSGSSCANLMMAR 267
            C  H +ID  Q ACP      SS  ++ P+    C N +  R
Sbjct: 4914 CNQHCDIDRFQGACPTSPPPVSSAPLSSPSPAPGCDNAIPLR 4955

>HPS4_MOUSE (Q99KG7) Hermansky-Pudlak syndrome 4 protein homolog (Light-ear|
           protein) (Le protein)
          Length = 671

 Score = 29.6 bits (65), Expect = 9.0
 Identities = 23/83 (27%), Positives = 35/83 (42%), Gaps = 7/83 (8%)
 Frame = -2

Query: 590 PASPPARRLNSDGVYDLSSIKAELSVKKGGLSKYYDGKS----QSFAC---MSEVRCLED 432
           P +  A   N   +YD S +K E    + G+  +Y  ++    Q   C      VRCL D
Sbjct: 7   PETKSAAWWNYFFLYDGSKVKGEGDPTRAGICYFYPPQTLLDQQELLCGQLAGVVRCLWD 66

Query: 431 LPKKRPYNKKMKPCRSHVEIDGD 363
           L    P   +M+  +  +  DGD
Sbjct: 67  LSGTPPMLIRMRNLKFAIRADGD 89


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 80,084,639
Number of Sequences: 219361
Number of extensions: 1698794
Number of successful extensions: 6522
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 5974
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6505
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6769072002
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)