ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal33i20
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PA2GX_HUMAN (O15496) Group 10 secretory phospholipase A2 precurs... 30 3.6
2SP96_DICDI (P14328) Spore coat protein SP96 29 4.7
3ATKA_PSEPK (Q88FD7) Potassium-transporting ATPase A chain (EC 3.... 28 8.1

>PA2GX_HUMAN (O15496) Group 10 secretory phospholipase A2 precursor (EC 3.1.1.4)|
           (Group X secretory phospholipase A2)
           (Phosphatidylcholine 2-acylhydrolase GX) (GX sPLA2)
           (sPLA2-X)
          Length = 155

 Score = 29.6 bits (65), Expect = 3.6
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -2

Query: 340 CFCGCHGNWRSRRFWNWCAHWDSC 269
           CFCG  G+ + R   +WC H   C
Sbjct: 57  CFCGLGGHGQPRDAIDWCCHGHDC 80



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>SP96_DICDI (P14328) Spore coat protein SP96|
          Length = 600

 Score = 29.3 bits (64), Expect = 4.7
 Identities = 15/34 (44%), Positives = 21/34 (61%)
 Frame = +2

Query: 344 SMSSATNPASTAVXTISPTSRLTTAVNAFTESLT 445
           S SSA++ A+TA  TI+ T+  TTA    T + T
Sbjct: 527 SSSSASSAATTAATTIATTAATTTATTTATTATT 560



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>ATKA_PSEPK (Q88FD7) Potassium-transporting ATPase A chain (EC 3.6.3.12)|
           (Potassium-translocating ATPase A chain) (ATP
           phosphohydrolase [potassium-transporting] A chain)
           (Potassium-binding and translocating subunit A)
          Length = 564

 Score = 28.5 bits (62), Expect = 8.1
 Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 3/35 (8%)
 Frame = -3

Query: 447 AVRDSVNALT---AVVNLEVGEIVXTAVEAGFVAL 352
           A+ DS+N LT   A+VN+ VGE++   V AG   +
Sbjct: 353 AMHDSLNPLTGMVAMVNMMVGEVIFGGVGAGLYGM 387


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,238,903
Number of Sequences: 219361
Number of extensions: 536930
Number of successful extensions: 1098
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1071
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1097
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2735358828
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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