ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal33i20
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|X82937.1|HVRNAJIP H.vulgare mRNA for jasmonate induced protein 876 0.0
2ref|XM_215932.3| PREDICTED: Rattus norvegicus matrilin 4 (predic... 42 1.5
3gb|AC017026.8| Homo sapiens BAC clone RP11-269L4 from 2, complet... 40 6.0
4gb|U91319.1|HSU91319 Human chromosome 16p13.11 BAC clone CIT987S... 40 6.0

>emb|X82937.1|HVRNAJIP H.vulgare mRNA for jasmonate induced protein
          Length = 1334

 Score =  876 bits (442), Expect = 0.0
 Identities = 447/449 (99%)
 Strand = Plus / Minus

                                                                        
Query: 1    tcccgacaggggcggggggtattattttaggagtgcacactaggcacttacatactcacg 60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1274 tcccgacaggggcggggggtattattttaggagtgcacactaggcacttacatactcacg 1215

                                                                        
Query: 61   acagtagtagctagcactaagagcagaagatagcatagcaaagatcatagtagtagcatg 120
            ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1214 acagtagtagctamcactaagagcagaagatagcatagcaaagatcatagtagtagcatg 1155

                                                                        
Query: 121  atcagtttaaagttcagggtaattgtgcttaactagacgagcgagttcgagaccatgagg 180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1154 atcagtttaaagttcagggtaattgtgcttaactagacgagcgagttcgagaccatgagg 1095

                                                                        
Query: 181  cataggcgccacacggcaaactgtaagcccgtctgttatcttcaccttgctagttccact 240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1094 cataggcgccacacggcaaactgtaagcccgtctgttatcttcaccttgctagttccact 1035

                                                                        
Query: 241  gctgaaaatcaagtcaagcagcgcacctgcagctatcccaatgagcgcaccaattccaaa 300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1034 gctgaaaatcaagtcaagcagcgcacctgcagctatcccaatgagcgcaccaattccaaa 975

                                                                        
Query: 301  accgacgactcctccaattaccgtgacagccgcagaagcaatttcgatgtctagtgctac 360
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 974  accgacgactcctccaattaccgtgacagccgcagaagcaatttcgatgtctagtgctac 915

                                                                        
Query: 361  gaatccagcttctacagcagtantaactatttctcccacctcaaggttaactactgcagt 420
            |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 914  gaatccagcttctacagcagtagtaactatttctcccacctcaaggttaactactgcagt 855

                                         
Query: 421  taacgcatttactgaatccctaaccgctg 449
            |||||||||||||||||||||||||||||
Sbjct: 854  taacgcatttactgaatccctaaccgctg 826



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>ref|XM_215932.3| PREDICTED: Rattus norvegicus matrilin 4 (predicted)
           (Matn4_predicted), mRNA
          Length = 2236

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 162 cgagttcgagaccatgaggca 182
           |||||||||||||||||||||
Sbjct: 253 cgagttcgagaccatgaggca 273



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>gb|AC017026.8| Homo sapiens BAC clone RP11-269L4 from 2, complete sequence
          Length = 37049

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 409   aactactgcagttaacgcatttac 432
             ||||||||||||||| ||||||||
Sbjct: 27724 aactactgcagttaatgcatttac 27747



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>gb|U91319.1|HSU91319 Human chromosome 16p13.11 BAC clone CIT987SK-98H8 complete sequence
          Length = 125630

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 238    actgctgaaaatcaagtcaa 257
              ||||||||||||||||||||
Sbjct: 106508 actgctgaaaatcaagtcaa 106489


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,256,180
Number of Sequences: 3902068
Number of extensions: 3256180
Number of successful extensions: 54276
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 54271
Number of HSP's gapped (non-prelim): 5
length of query: 449
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 427
effective length of database: 17,147,199,772
effective search space: 7321854302644
effective search space used: 7321854302644
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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