| Clone Name | rbaal33i20 |
|---|---|
| Clone Library Name | barley_pub |
| No. | Definition | Score (bits) |
E Value |
1 | emb|X82937.1|HVRNAJIP H.vulgare mRNA for jasmonate induced protein | 876 | 0.0 | 2 | ref|XM_215932.3| PREDICTED: Rattus norvegicus matrilin 4 (predic... | 42 | 1.5 | 3 | gb|AC017026.8| Homo sapiens BAC clone RP11-269L4 from 2, complet... | 40 | 6.0 | 4 | gb|U91319.1|HSU91319 Human chromosome 16p13.11 BAC clone CIT987S... | 40 | 6.0 |
|---|
>emb|X82937.1|HVRNAJIP H.vulgare mRNA for jasmonate induced protein Length = 1334 Score = 876 bits (442), Expect = 0.0 Identities = 447/449 (99%) Strand = Plus / Minus Query: 1 tcccgacaggggcggggggtattattttaggagtgcacactaggcacttacatactcacg 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1274 tcccgacaggggcggggggtattattttaggagtgcacactaggcacttacatactcacg 1215 Query: 61 acagtagtagctagcactaagagcagaagatagcatagcaaagatcatagtagtagcatg 120 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1214 acagtagtagctamcactaagagcagaagatagcatagcaaagatcatagtagtagcatg 1155 Query: 121 atcagtttaaagttcagggtaattgtgcttaactagacgagcgagttcgagaccatgagg 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1154 atcagtttaaagttcagggtaattgtgcttaactagacgagcgagttcgagaccatgagg 1095 Query: 181 cataggcgccacacggcaaactgtaagcccgtctgttatcttcaccttgctagttccact 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1094 cataggcgccacacggcaaactgtaagcccgtctgttatcttcaccttgctagttccact 1035 Query: 241 gctgaaaatcaagtcaagcagcgcacctgcagctatcccaatgagcgcaccaattccaaa 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1034 gctgaaaatcaagtcaagcagcgcacctgcagctatcccaatgagcgcaccaattccaaa 975 Query: 301 accgacgactcctccaattaccgtgacagccgcagaagcaatttcgatgtctagtgctac 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 974 accgacgactcctccaattaccgtgacagccgcagaagcaatttcgatgtctagtgctac 915 Query: 361 gaatccagcttctacagcagtantaactatttctcccacctcaaggttaactactgcagt 420 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 914 gaatccagcttctacagcagtagtaactatttctcccacctcaaggttaactactgcagt 855 Query: 421 taacgcatttactgaatccctaaccgctg 449 ||||||||||||||||||||||||||||| Sbjct: 854 taacgcatttactgaatccctaaccgctg 826
>ref|XM_215932.3| PREDICTED: Rattus norvegicus matrilin 4 (predicted) (Matn4_predicted), mRNA Length = 2236 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 162 cgagttcgagaccatgaggca 182 ||||||||||||||||||||| Sbjct: 253 cgagttcgagaccatgaggca 273
>gb|AC017026.8| Homo sapiens BAC clone RP11-269L4 from 2, complete sequence Length = 37049 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 409 aactactgcagttaacgcatttac 432 ||||||||||||||| |||||||| Sbjct: 27724 aactactgcagttaatgcatttac 27747
>gb|U91319.1|HSU91319 Human chromosome 16p13.11 BAC clone CIT987SK-98H8 complete sequence Length = 125630 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 238 actgctgaaaatcaagtcaa 257 |||||||||||||||||||| Sbjct: 106508 actgctgaaaatcaagtcaa 106489 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,256,180 Number of Sequences: 3902068 Number of extensions: 3256180 Number of successful extensions: 54276 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 4 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 54271 Number of HSP's gapped (non-prelim): 5 length of query: 449 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 427 effective length of database: 17,147,199,772 effective search space: 7321854302644 effective search space used: 7321854302644 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)