| Clone Name | rbaal33i17 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK121753.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033087P17, full insert sequence Length = 1106 Score = 337 bits (170), Expect = 3e-89 Identities = 317/366 (86%) Strand = Plus / Minus Query: 289 acggacccttgggaatcttggacaggcacttctcatcgaagatggcgtagtacttcttca 348 ||||||||||||| ||||| || ||||| ||||||||||| || || ||||||||||||| Sbjct: 801 acggacccttggggatcttagagaggcatttctcatcgaaaatagcatagtacttcttca 742 Query: 349 gttcgaccatggccttctctccaaaagcatcaatcttgtcctcatacttctcgtacagga 408 |||||| |||||||||||||||||||||||| || | ||||||||||||||| ||||| | Sbjct: 741 gttcgatcatggccttctctccaaaagcatcgatttggtcctcatacttctcatacagaa 682 Query: 409 caggcacggtgtagagtaccatgaagactatgtagaacaaggtgaggaaattgcaggagc 468 ||||||||||||| |||||||| |||||||||||||||||||| |||||||||||| ||| Sbjct: 681 caggcacggtgtacagtaccataaagactatgtagaacaaggtcaggaaattgcagcagc 622 Query: 469 tgccaagagcagagaggatccacaggcctgcaaccacaatcaggaatttcttcaggtcgc 528 | |||||| ||||||| | ||| || || | || |||||||| |||||||||||||| Sbjct: 621 tcccaagaacagagagaacccagagacccacgacaacaatcagaaatttcttcaggtcat 562 Query: 529 ggccttggccaatggccctcaggctagcaaagcccctgttgatctcatagcgcagcgagc 588 | ||||| ||||| |||||| | ||||||||||||| ||||||||| | | ||| |||| Sbjct: 561 gcccttgaccaatctccctcaaggtagcaaagcccctattgatctcaaatctcagtgagc 502 Query: 589 gggcaacattgaccgccaggtcctcagggatcttcacctctggaatgttgggagggcact 648 | |||||||| || ||||||||||| ||||||||||| || |||||||| |||||| ||| Sbjct: 501 gagcaacattaacagccaggtcctctgggatcttcacttcaggaatgttaggaggggact 442 Query: 649 tgttga 654 |||||| Sbjct: 441 tgttga 436
>dbj|AK104245.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-308-D08, full insert sequence Length = 1039 Score = 337 bits (170), Expect = 3e-89 Identities = 317/366 (86%) Strand = Plus / Minus Query: 289 acggacccttgggaatcttggacaggcacttctcatcgaagatggcgtagtacttcttca 348 ||||||||||||| ||||| || ||||| ||||||||||| || || ||||||||||||| Sbjct: 818 acggacccttggggatcttagagaggcatttctcatcgaaaatagcatagtacttcttca 759 Query: 349 gttcgaccatggccttctctccaaaagcatcaatcttgtcctcatacttctcgtacagga 408 |||||| |||||||||||||||||||||||| || | ||||||||||||||| ||||| | Sbjct: 758 gttcgatcatggccttctctccaaaagcatcgatttggtcctcatacttctcatacagaa 699 Query: 409 caggcacggtgtagagtaccatgaagactatgtagaacaaggtgaggaaattgcaggagc 468 ||||||||||||| |||||||| |||||||||||||||||||| |||||||||||| ||| Sbjct: 698 caggcacggtgtacagtaccataaagactatgtagaacaaggtcaggaaattgcagcagc 639 Query: 469 tgccaagagcagagaggatccacaggcctgcaaccacaatcaggaatttcttcaggtcgc 528 | |||||| ||||||| | ||| || || | || |||||||| |||||||||||||| Sbjct: 638 tcccaagaacagagagaacccagagacccacgacaacaatcagaaatttcttcaggtcat 579 Query: 529 ggccttggccaatggccctcaggctagcaaagcccctgttgatctcatagcgcagcgagc 588 | ||||| ||||| |||||| | ||||||||||||| ||||||||| | | ||| |||| Sbjct: 578 gcccttgaccaatctccctcaaggtagcaaagcccctattgatctcaaatctcagtgagc 519 Query: 589 gggcaacattgaccgccaggtcctcagggatcttcacctctggaatgttgggagggcact 648 | |||||||| || ||||||||||| ||||||||||| || |||||||| |||||| ||| Sbjct: 518 gagcaacattaacagccaggtcctctgggatcttcacttcaggaatgttaggaggggact 459 Query: 649 tgttga 654 |||||| Sbjct: 458 tgttga 453
>gb|AY104861.1| Zea mays PCO082817 mRNA sequence Length = 1190 Score = 331 bits (167), Expect = 2e-87 Identities = 335/391 (85%) Strand = Plus / Minus Query: 264 ttctaatgctgcttcttgtccttggacggacccttgggaatcttggacaggcacttctca 323 |||||||| ||||||||||| || | || ||||| |||||||| || ||||| ||||| Sbjct: 869 ttctaatgttgcttcttgtcttttaatgggcccttcggaatctttgataggcatttctcg 810 Query: 324 tcgaagatggcgtagtacttcttcagttcgaccatggccttctctccaaaagcatcaatc 383 |||||||||||||||||| ||||||| ||||||||||||||||| ||||||||||||| | Sbjct: 809 tcgaagatggcgtagtacctcttcagctcgaccatggccttctcaccaaaagcatcaacc 750 Query: 384 ttgtcctcatacttctcgtacaggacaggcacggtgtagagtaccatgaagactatgtag 443 || ||||||| ||||| |||||||| || || ||||| |||||||| || |||||||| Sbjct: 749 ttatcctcatgtttctcatacaggaccggtacagtgtacagtaccataaaaactatgtaa 690 Query: 444 aacaaggtgaggaaattgcaggagctgccaagagcagagaggatccacaggcctgcaacc 503 |||||||||||||||||||| |||| |||||| |||| ||||||||||| ||||||| | Sbjct: 689 gacaaggtgaggaaattgcagcagctcccaagaacagaaaggatccacagtcctgcaatc 630 Query: 504 acaatcaggaatttcttcaggtcgcggccttggccaatggccctcaggctagcaaagccc 563 |||||||| |||||||| ||||| ||||||||||||| |||||| | ||||||| ||| Sbjct: 629 acaatcagaaatttcttgaggtcatggccttggccaatctccctcaaggtagcaaaaccc 570 Query: 564 ctgttgatctcatagcgcagcgagcgggcaacattgaccgccaggtcctcagggatcttc 623 |||||||||||||| | ||| || || |||||||| || |||||||| || ||||||||| Sbjct: 569 ctgttgatctcatatctcagggaacgtgcaacattcacagccaggtcatctgggatcttc 510 Query: 624 acctctggaatgttgggagggcacttgttga 654 ||||| || ||||| ||||| ||||||||| Sbjct: 509 acctcggggatgttaggaggagacttgttga 479
>dbj|AK061354.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-303-G11, full insert sequence Length = 1138 Score = 329 bits (166), Expect = 7e-87 Identities = 316/366 (86%) Strand = Plus / Minus Query: 289 acggacccttgggaatcttggacaggcacttctcatcgaagatggcgtagtacttcttca 348 ||||||||| ||| ||||| || ||||| ||||||||||| || || ||||||||||||| Sbjct: 843 acggaccctcggggatcttagagaggcatttctcatcgaaaatagcatagtacttcttca 784 Query: 349 gttcgaccatggccttctctccaaaagcatcaatcttgtcctcatacttctcgtacagga 408 |||||| |||||||||||||||||||||||| || | ||||||||||||||| ||||| | Sbjct: 783 gttcgatcatggccttctctccaaaagcatcgatttggtcctcatacttctcatacagaa 724 Query: 409 caggcacggtgtagagtaccatgaagactatgtagaacaaggtgaggaaattgcaggagc 468 ||||||||||||| |||||||| |||||||||||||||||||| |||||||||||| ||| Sbjct: 723 caggcacggtgtacagtaccataaagactatgtagaacaaggtcaggaaattgcagcagc 664 Query: 469 tgccaagagcagagaggatccacaggcctgcaaccacaatcaggaatttcttcaggtcgc 528 | |||||| ||||||| | ||| || || | || |||||||| |||||||||||||| Sbjct: 663 tcccaagaacagagagaacccagagacccacgacaacaatcagaaatttcttcaggtcat 604 Query: 529 ggccttggccaatggccctcaggctagcaaagcccctgttgatctcatagcgcagcgagc 588 | ||||| ||||| |||||| | ||||||||||||| ||||||||| | | ||| |||| Sbjct: 603 gcccttgaccaatctccctcaaggtagcaaagcccctattgatctcaaatctcagtgagc 544 Query: 589 gggcaacattgaccgccaggtcctcagggatcttcacctctggaatgttgggagggcact 648 | |||||||| || ||||||||||| ||||||||||| || |||||||| |||||| ||| Sbjct: 543 gagcaacattaacagccaggtcctctgggatcttcacttcaggaatgttaggaggggact 484 Query: 649 tgttga 654 |||||| Sbjct: 483 tgttga 478
>gb|AC109596.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1593_C11, complete sequence Length = 112065 Score = 176 bits (89), Expect = 6e-41 Identities = 134/149 (89%) Strand = Plus / Plus Query: 289 acggacccttgggaatcttggacaggcacttctcatcgaagatggcgtagtacttcttca 348 ||||||||||||| ||||| || ||||| ||||||||||| || || ||||||||||||| Sbjct: 76782 acggacccttggggatcttagagaggcatttctcatcgaaaatagcatagtacttcttca 76841 Query: 349 gttcgaccatggccttctctccaaaagcatcaatcttgtcctcatacttctcgtacagga 408 |||||| |||||||||||||||||||||||| || | ||||||||||||||| ||||| | Sbjct: 76842 gttcgatcatggccttctctccaaaagcatcgatttggtcctcatacttctcatacagaa 76901 Query: 409 caggcacggtgtagagtaccatgaagact 437 ||||||||||||| |||||||| |||||| Sbjct: 76902 caggcacggtgtacagtaccataaagact 76930 Score = 113 bits (57), Expect = 7e-22 Identities = 120/141 (85%) Strand = Plus / Plus Query: 504 acaatcaggaatttcttcaggtcgcggccttggccaatggccctcaggctagcaaagccc 563 |||||||| |||||||||||||| | ||||| ||||| |||||| | ||||||||||| Sbjct: 77174 acaatcagaaatttcttcaggtcatgcccttgaccaatctccctcaaggtagcaaagccc 77233 Query: 564 ctgttgatctcatagcgcagcgagcgggcaacattgaccgccaggtcctcagggatcttc 623 || ||||||||| | | ||| ||||| |||||||| || ||||||||||| ||||||||| Sbjct: 77234 ctattgatctcaaatctcagtgagcgagcaacattaacagccaggtcctctgggatcttc 77293 Query: 624 acctctggaatgttgggaggg 644 || || |||||||| |||||| Sbjct: 77294 acttcaggaatgttaggaggg 77314 Score = 65.9 bits (33), Expect = 2e-07 Identities = 45/49 (91%) Strand = Plus / Plus Query: 436 ctatgtagaacaaggtgaggaaattgcaggagctgccaagagcagagag 484 |||||||||||||||| |||||||||||| |||| |||||| ||||||| Sbjct: 77005 ctatgtagaacaaggtcaggaaattgcagcagctcccaagaacagagag 77053
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 176 bits (89), Expect = 6e-41 Identities = 134/149 (89%) Strand = Plus / Plus Query: 289 acggacccttgggaatcttggacaggcacttctcatcgaagatggcgtagtacttcttca 348 ||||||||||||| ||||| || ||||| ||||||||||| || || ||||||||||||| Sbjct: 25973655 acggacccttggggatcttagagaggcatttctcatcgaaaatagcatagtacttcttca 25973714 Query: 349 gttcgaccatggccttctctccaaaagcatcaatcttgtcctcatacttctcgtacagga 408 |||||| |||||||||||||||||||||||| || | ||||||||||||||| ||||| | Sbjct: 25973715 gttcgatcatggccttctctccaaaagcatcgatttggtcctcatacttctcatacagaa 25973774 Query: 409 caggcacggtgtagagtaccatgaagact 437 ||||||||||||| |||||||| |||||| Sbjct: 25973775 caggcacggtgtacagtaccataaagact 25973803 Score = 113 bits (57), Expect = 7e-22 Identities = 120/141 (85%) Strand = Plus / Plus Query: 504 acaatcaggaatttcttcaggtcgcggccttggccaatggccctcaggctagcaaagccc 563 |||||||| |||||||||||||| | ||||| ||||| |||||| | ||||||||||| Sbjct: 25974047 acaatcagaaatttcttcaggtcatgcccttgaccaatctccctcaaggtagcaaagccc 25974106 Query: 564 ctgttgatctcatagcgcagcgagcgggcaacattgaccgccaggtcctcagggatcttc 623 || ||||||||| | | ||| ||||| |||||||| || ||||||||||| ||||||||| Sbjct: 25974107 ctattgatctcaaatctcagtgagcgagcaacattaacagccaggtcctctgggatcttc 25974166 Query: 624 acctctggaatgttgggaggg 644 || || |||||||| |||||| Sbjct: 25974167 acttcaggaatgttaggaggg 25974187 Score = 65.9 bits (33), Expect = 2e-07 Identities = 45/49 (91%) Strand = Plus / Plus Query: 436 ctatgtagaacaaggtgaggaaattgcaggagctgccaagagcagagag 484 |||||||||||||||| |||||||||||| |||| |||||| ||||||| Sbjct: 25973878 ctatgtagaacaaggtcaggaaattgcagcagctcccaagaacagagag 25973926 Score = 44.1 bits (22), Expect = 0.57 Identities = 22/22 (100%) Strand = Plus / Minus Query: 181 aatcacaagttcacaaccatcc 202 |||||||||||||||||||||| Sbjct: 28830076 aatcacaagttcacaaccatcc 28830055 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 182 atcacaagttcacaaccatc 201 |||||||||||||||||||| Sbjct: 25063676 atcacaagttcacaaccatc 25063695
>gb|AY112460.1| Zea mays CL9078_1 mRNA sequence Length = 686 Score = 174 bits (88), Expect = 2e-40 Identities = 265/324 (81%) Strand = Plus / Plus Query: 294 cccttgggaatcttggacaggcacttctcatcgaagatggcgtagtacttcttcagttcg 353 ||||| |||||||| || ||||||||||||||||| ||||| || |||||||||||||| Sbjct: 343 ccctttggaatcttcgataggcacttctcatcgaaaatggcataatacttcttcagttca 402 Query: 354 accatggccttctctccaaaagcatcaatcttgtcctcatacttctcgtacaggacaggc 413 ||| |||||||| ||||||||||||| |||||||||||| ||||| ||||| || || Sbjct: 403 gtcatagccttctcaccaaaagcatcaaccttgtcctcatatttctcatacagaactggt 462 Query: 414 acggtgtagagtaccatgaagactatgtagaacaaggtgaggaaattgcaggagctgcca 473 || ||||| ||| ||| ||||| || ||||||| || ||||| |||||| |||| || Sbjct: 463 acagtgtacagtgccacaaagacaatatagaacagtgtcaggaagttgcagcagctcccg 522 Query: 474 agagcagagaggatccacaggcctgcaaccacaatcaggaatttcttcaggtcgcggcct 533 ||| | || || | ||| || ||||||| ||||| |||||||||||||| || ||||| Sbjct: 523 agaactgaaagaagccagagacctgcaataacaattaggaatttcttcagatcacggcca 582 Query: 534 tggccaatggccctcaggctagcaaagcccctgttgatctcatagcgcagcgagcgggca 593 || ||||| |||| | | ||||||||||||||||||||||||| | ||| || ||||| Sbjct: 583 tgcccaatctcccttaaggtagcaaagcccctgttgatctcatatctcagtgacagggca 642 Query: 594 acattgaccgccaggtcctcaggg 617 ||||| || |||| ||||||||| Sbjct: 643 acattaacagccacatcctcaggg 666
>ref|NM_191117.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 762 Score = 129 bits (65), Expect = 1e-26 Identities = 287/361 (79%) Strand = Plus / Minus Query: 291 ggacccttgggaatcttggacaggcacttctcatcgaagatggcgtagtacttcttcagt 350 ||||||||||||||||| || ||||| ||||| || |||| ||| ||||||||||| | | Sbjct: 740 ggacccttgggaatcttcgataggcatttctcttcaaagagggcatagtacttcttaaat 681 Query: 351 tcgaccatggccttctctccaaaagcatcaatcttgtcctcatacttctcgtacaggaca 410 || | | |||||||| ||||||||||||| |||||||||||||||||| ||||| || Sbjct: 680 tcaatctcagccttctcaccaaaagcatcaaccttgtcctcatacttctcatacagtact 621 Query: 411 ggcacggtgtagagtaccatgaagactatgtagaacaaggtgaggaaattgcaggagctg 470 ||||| |||||||| ||| || |||||||||||||| || | || || ||| ||| Sbjct: 620 ggcacagtgtagagcgccacaaaaactatgtagaacaaagtcaaaaagttacagctgcta 561 Query: 471 ccaagagcagagaggatccacaggcctgcaaccacaatcaggaatttcttcaggtcgcgg 530 |||||| | || || ||||| || || || | |||||| ||||| |||||||| || ||| Sbjct: 560 ccaagaactgacagaatccagagtccagcgatcacaatgaggaacttcttcagatcacgg 501 Query: 531 ccttggccaatggccctcaggctagcaaagcccctgttgatctcatagcgcagcgagcgg 590 || || ||||| |||||| | | ||||| || || ||||||||||| | ||| || || Sbjct: 500 ccatgaccaatctccctcaaggttgcaaaacctctattgatctcatatctcagagaaagg 441 Query: 591 gcaacattgaccgccaggtcctcagggatcttcacctctggaatgttgggagggcacttg 650 |||| || || | || |||||| || || |||||||| |||||||| |||||| ||||| Sbjct: 440 gcaatgtttactgtcaagtcctctggaattttcacctcaggaatgtttggaggggacttg 381 Query: 651 t 651 | Sbjct: 380 t 380
>dbj|AK121245.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023099G09, full insert sequence Length = 1325 Score = 129 bits (65), Expect = 1e-26 Identities = 287/361 (79%) Strand = Plus / Minus Query: 291 ggacccttgggaatcttggacaggcacttctcatcgaagatggcgtagtacttcttcagt 350 ||||||||||||||||| || ||||| ||||| || |||| ||| ||||||||||| | | Sbjct: 874 ggacccttgggaatcttcgataggcatttctcttcaaagagggcatagtacttcttaaat 815 Query: 351 tcgaccatggccttctctccaaaagcatcaatcttgtcctcatacttctcgtacaggaca 410 || | | |||||||| ||||||||||||| |||||||||||||||||| ||||| || Sbjct: 814 tcaatctcagccttctcaccaaaagcatcaaccttgtcctcatacttctcatacagtact 755 Query: 411 ggcacggtgtagagtaccatgaagactatgtagaacaaggtgaggaaattgcaggagctg 470 ||||| |||||||| ||| || |||||||||||||| || | || || ||| ||| Sbjct: 754 ggcacagtgtagagcgccacaaaaactatgtagaacaaagtcaaaaagttacagctgcta 695 Query: 471 ccaagagcagagaggatccacaggcctgcaaccacaatcaggaatttcttcaggtcgcgg 530 |||||| | || || ||||| || || || | |||||| ||||| |||||||| || ||| Sbjct: 694 ccaagaactgacagaatccagagtccagcgatcacaatgaggaacttcttcagatcacgg 635 Query: 531 ccttggccaatggccctcaggctagcaaagcccctgttgatctcatagcgcagcgagcgg 590 || || ||||| |||||| | | ||||| || || ||||||||||| | ||| || || Sbjct: 634 ccatgaccaatctccctcaaggttgcaaaacctctattgatctcatatctcagagaaagg 575 Query: 591 gcaacattgaccgccaggtcctcagggatcttcacctctggaatgttgggagggcacttg 650 |||| || || | || |||||| || || |||||||| |||||||| |||||| ||||| Sbjct: 574 gcaatgtttactgtcaagtcctctggaattttcacctcaggaatgtttggaggggacttg 515 Query: 651 t 651 | Sbjct: 514 t 514
>dbj|AK065226.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002H02, full insert sequence Length = 1181 Score = 129 bits (65), Expect = 1e-26 Identities = 287/361 (79%) Strand = Plus / Minus Query: 291 ggacccttgggaatcttggacaggcacttctcatcgaagatggcgtagtacttcttcagt 350 ||||||||||||||||| || ||||| ||||| || |||| ||| ||||||||||| | | Sbjct: 865 ggacccttgggaatcttcgataggcatttctcttcaaagagggcatagtacttcttaaat 806 Query: 351 tcgaccatggccttctctccaaaagcatcaatcttgtcctcatacttctcgtacaggaca 410 || | | |||||||| ||||||||||||| |||||||||||||||||| ||||| || Sbjct: 805 tcaatctcagccttctcaccaaaagcatcaaccttgtcctcatacttctcatacagtact 746 Query: 411 ggcacggtgtagagtaccatgaagactatgtagaacaaggtgaggaaattgcaggagctg 470 ||||| |||||||| ||| || |||||||||||||| || | || || ||| ||| Sbjct: 745 ggcacagtgtagagcgccacaaaaactatgtagaacaaagtcaaaaagttacagctgcta 686 Query: 471 ccaagagcagagaggatccacaggcctgcaaccacaatcaggaatttcttcaggtcgcgg 530 |||||| | || || ||||| || || || | |||||| ||||| |||||||| || ||| Sbjct: 685 ccaagaactgacagaatccagagtccagcgatcacaatgaggaacttcttcagatcacgg 626 Query: 531 ccttggccaatggccctcaggctagcaaagcccctgttgatctcatagcgcagcgagcgg 590 || || ||||| |||||| | | ||||| || || ||||||||||| | ||| || || Sbjct: 625 ccatgaccaatctccctcaaggttgcaaaacctctattgatctcatatctcagagaaagg 566 Query: 591 gcaacattgaccgccaggtcctcagggatcttcacctctggaatgttgggagggcacttg 650 |||| || || | || |||||| || || |||||||| |||||||| |||||| ||||| Sbjct: 565 gcaatgtttactgtcaagtcctctggaattttcacctcaggaatgtttggaggggacttg 506 Query: 651 t 651 | Sbjct: 505 t 505
>dbj|AK062151.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-045-H05, full insert sequence Length = 731 Score = 129 bits (65), Expect = 1e-26 Identities = 287/361 (79%) Strand = Plus / Minus Query: 291 ggacccttgggaatcttggacaggcacttctcatcgaagatggcgtagtacttcttcagt 350 ||||||||||||||||| || ||||| ||||| || |||| ||| ||||||||||| | | Sbjct: 385 ggacccttgggaatcttcgataggcatttctcttcaaagagggcatagtacttcttaaat 326 Query: 351 tcgaccatggccttctctccaaaagcatcaatcttgtcctcatacttctcgtacaggaca 410 || | | |||||||| ||||||||||||| |||||||||||||||||| ||||| || Sbjct: 325 tcaatctcagccttctcaccaaaagcatcaaccttgtcctcatacttctcatacagtact 266 Query: 411 ggcacggtgtagagtaccatgaagactatgtagaacaaggtgaggaaattgcaggagctg 470 ||||| |||||||| ||| || |||||||||||||| || | || || ||| ||| Sbjct: 265 ggcacagtgtagagcgccacaaaaactatgtagaacaaagtcaaaaagttacagctgcta 206 Query: 471 ccaagagcagagaggatccacaggcctgcaaccacaatcaggaatttcttcaggtcgcgg 530 |||||| | || || ||||| || || || | |||||| ||||| |||||||| || ||| Sbjct: 205 ccaagaactgacagaatccagagtccagcgatcacaatgaggaacttcttcagatcacgg 146 Query: 531 ccttggccaatggccctcaggctagcaaagcccctgttgatctcatagcgcagcgagcgg 590 || || ||||| |||||| | | ||||| || || ||||||||||| | ||| || || Sbjct: 145 ccatgaccaatctccctcaaggttgcaaaacctctattgatctcatatctcagagaaagg 86 Query: 591 gcaacattgaccgccaggtcctcagggatcttcacctctggaatgttgggagggcacttg 650 |||| || || | || |||||| || || |||||||| |||||||| |||||| ||||| Sbjct: 85 gcaatgtttactgtcaagtcctctggaattttcacctcaggaatgtttggaggggacttg 26 Query: 651 t 651 | Sbjct: 25 t 25
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 107 bits (54), Expect = 5e-20 Identities = 114/134 (85%) Strand = Plus / Minus Query: 291 ggacccttgggaatcttggacaggcacttctcatcgaagatggcgtagtacttcttcagt 350 ||||||||||||||||| || ||||| ||||| || |||| ||| ||||||||||| | | Sbjct: 30733527 ggacccttgggaatcttcgataggcatttctcttcaaagagggcatagtacttcttaaat 30733468 Query: 351 tcgaccatggccttctctccaaaagcatcaatcttgtcctcatacttctcgtacaggaca 410 || | | |||||||| ||||||||||||| |||||||||||||||||| ||||| || Sbjct: 30733467 tcaatctcagccttctcaccaaaagcatcaaccttgtcctcatacttctcatacagtact 30733408 Query: 411 ggcacggtgtagag 424 ||||| |||||||| Sbjct: 30733407 ggcacagtgtagag 30733394 Score = 42.1 bits (21), Expect = 2.3 Identities = 111/141 (78%) Strand = Plus / Minus Query: 504 acaatcaggaatttcttcaggtcgcggccttggccaatggccctcaggctagcaaagccc 563 ||||| ||||| |||||||| || ||||| || ||||| |||||| | | ||||| || Sbjct: 30733137 acaatgaggaacttcttcagatcacggccatgaccaatctccctcaaggttgcaaaacct 30733078 Query: 564 ctgttgatctcatagcgcagcgagcgggcaacattgaccgccaggtcctcagggatcttc 623 || ||||||||||| | ||| || |||||| || || | || |||||| || || ||| Sbjct: 30733077 ctattgatctcatatctcagagaaagggcaatgtttactgtcaagtcctctggaattttc 30733018 Query: 624 acctctggaatgttgggaggg 644 ||||| |||||||| |||||| Sbjct: 30733017 acctcaggaatgtttggaggg 30732997 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 182 atcacaagttcacaaccatc 201 |||||||||||||||||||| Sbjct: 23932590 atcacaagttcacaaccatc 23932571 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 181 aatcacaagttcacaaccat 200 |||||||||||||||||||| Sbjct: 20903311 aatcacaagttcacaaccat 20903330
>dbj|AP003218.6| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBb0021A09 Length = 127973 Score = 107 bits (54), Expect = 5e-20 Identities = 114/134 (85%) Strand = Plus / Minus Query: 291 ggacccttgggaatcttggacaggcacttctcatcgaagatggcgtagtacttcttcagt 350 ||||||||||||||||| || ||||| ||||| || |||| ||| ||||||||||| | | Sbjct: 22802 ggacccttgggaatcttcgataggcatttctcttcaaagagggcatagtacttcttaaat 22743 Query: 351 tcgaccatggccttctctccaaaagcatcaatcttgtcctcatacttctcgtacaggaca 410 || | | |||||||| ||||||||||||| |||||||||||||||||| ||||| || Sbjct: 22742 tcaatctcagccttctcaccaaaagcatcaaccttgtcctcatacttctcatacagtact 22683 Query: 411 ggcacggtgtagag 424 ||||| |||||||| Sbjct: 22682 ggcacagtgtagag 22669 Score = 42.1 bits (21), Expect = 2.3 Identities = 111/141 (78%) Strand = Plus / Minus Query: 504 acaatcaggaatttcttcaggtcgcggccttggccaatggccctcaggctagcaaagccc 563 ||||| ||||| |||||||| || ||||| || ||||| |||||| | | ||||| || Sbjct: 22412 acaatgaggaacttcttcagatcacggccatgaccaatctccctcaaggttgcaaaacct 22353 Query: 564 ctgttgatctcatagcgcagcgagcgggcaacattgaccgccaggtcctcagggatcttc 623 || ||||||||||| | ||| || |||||| || || | || |||||| || || ||| Sbjct: 22352 ctattgatctcatatctcagagaaagggcaatgtttactgtcaagtcctctggaattttc 22293 Query: 624 acctctggaatgttgggaggg 644 ||||| |||||||| |||||| Sbjct: 22292 acctcaggaatgtttggaggg 22272
>gb|BT018642.1| Zea mays clone EL01N0505A06.d mRNA sequence Length = 1634 Score = 61.9 bits (31), Expect = 2e-06 Identities = 61/71 (85%) Strand = Plus / Minus Query: 435 actatgtagaacaaggtgaggaaattgcaggagctgccaagagcagagaggatccacagg 494 |||||||| |||||||||| ||||||||| |||| ||| | |||| ||||||||||| Sbjct: 339 actatgtaagacaaggtgagaaaattgcagcagctcccatggacagaaaggatccacagt 280 Query: 495 cctgcaaccac 505 ||||||||||| Sbjct: 279 cctgcaaccac 269
>ref|XM_507601.1| PREDICTED Oryza sativa (japonica cultivar-group), OSJNBa0033D24.25 mRNA Length = 1524 Score = 52.0 bits (26), Expect = 0.002 Identities = 26/26 (100%) Strand = Plus / Minus Query: 38 atattacaccaacacaacttgcaagt 63 |||||||||||||||||||||||||| Sbjct: 1463 atattacaccaacacaacttgcaagt 1438
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 52.0 bits (26), Expect = 0.002 Identities = 26/26 (100%) Strand = Plus / Minus Query: 38 atattacaccaacacaacttgcaagt 63 |||||||||||||||||||||||||| Sbjct: 26763032 atattacaccaacacaacttgcaagt 26763007
>dbj|AP005439.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0033D24 Length = 186132 Score = 52.0 bits (26), Expect = 0.002 Identities = 26/26 (100%) Strand = Plus / Minus Query: 38 atattacaccaacacaacttgcaagt 63 |||||||||||||||||||||||||| Sbjct: 106374 atattacaccaacacaacttgcaagt 106349
>dbj|AP004464.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0665C04 Length = 177054 Score = 52.0 bits (26), Expect = 0.002 Identities = 26/26 (100%) Strand = Plus / Minus Query: 38 atattacaccaacacaacttgcaagt 63 |||||||||||||||||||||||||| Sbjct: 25822 atattacaccaacacaacttgcaagt 25797
>dbj|AK068776.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013160K11, full insert sequence Length = 1524 Score = 52.0 bits (26), Expect = 0.002 Identities = 26/26 (100%) Strand = Plus / Minus Query: 38 atattacaccaacacaacttgcaagt 63 |||||||||||||||||||||||||| Sbjct: 1463 atattacaccaacacaacttgcaagt 1438
>gb|AY103934.1| Zea mays PCO140136 mRNA sequence Length = 1116 Score = 48.1 bits (24), Expect = 0.037 Identities = 84/104 (80%) Strand = Plus / Minus Query: 378 tcaatcttgtcctcatacttctcgtacaggacaggcacggtgtagagtaccatgaagact 437 ||||||| ||||| |||||||||||||||||||| || |||| || |||| ||||| Sbjct: 797 tcaatctgatcctcgtacttctcgtacaggacaggtactgtgtgcagcaccacaaagaca 738 Query: 438 atgtagaacaaggtgaggaaattgcaggagctgccaagagcaga 481 ||||| | ||||| | ||| |||||| |||| |||||| |||| Sbjct: 737 atgtaaactaaggtcaagaagttgcagcagcttccaagaacaga 694
>gb|AY110552.1| Zea mays CL33648_1 mRNA sequence Length = 681 Score = 46.1 bits (23), Expect = 0.15 Identities = 50/59 (84%) Strand = Plus / Plus Query: 435 actatgtagaacaaggtgaggaaattgcaggagctgccaagagcagagaggatccacag 493 |||||||| |||||||||| ||||||||| |||| ||| | |||| ||||||||||| Sbjct: 330 actatgtaagacaaggtgagaaaattgcagcagctcccatggacagaaaggatccacag 388
>gb|AC112514.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNAb0023M11, complete sequence Length = 120228 Score = 44.1 bits (22), Expect = 0.57 Identities = 22/22 (100%) Strand = Plus / Plus Query: 179 ggaatcacaagttcacaaccat 200 |||||||||||||||||||||| Sbjct: 78627 ggaatcacaagttcacaaccat 78648
>ref|XM_658649.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN6137.2), mRNA Length = 2346 Score = 44.1 bits (22), Expect = 0.57 Identities = 28/30 (93%) Strand = Plus / Plus Query: 231 tgaagataaatctgcgcagggtaatctcta 260 ||||||| |||||||||| ||||||||||| Sbjct: 2316 tgaagatcaatctgcgcaaggtaatctcta 2345
>gb|AC092750.2| Oryza sativa (japonica cultivar-group) cultivar Nipponbare from chromosome 10, complete sequence Length = 134933 Score = 44.1 bits (22), Expect = 0.57 Identities = 22/22 (100%) Strand = Plus / Plus Query: 179 ggaatcacaagttcacaaccat 200 |||||||||||||||||||||| Sbjct: 18399 ggaatcacaagttcacaaccat 18420
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 44.1 bits (22), Expect = 0.57 Identities = 22/22 (100%) Strand = Plus / Plus Query: 179 ggaatcacaagttcacaaccat 200 |||||||||||||||||||||| Sbjct: 10237074 ggaatcacaagttcacaaccat 10237095 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 180 gaatcacaagttcacaacca 199 |||||||||||||||||||| Sbjct: 9787346 gaatcacaagttcacaacca 9787327
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 44.1 bits (22), Expect = 0.57 Identities = 22/22 (100%) Strand = Plus / Plus Query: 179 ggaatcacaagttcacaaccat 200 |||||||||||||||||||||| Sbjct: 10243113 ggaatcacaagttcacaaccat 10243134 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 180 gaatcacaagttcacaacca 199 |||||||||||||||||||| Sbjct: 9793385 gaatcacaagttcacaacca 9793366
>gb|AC134929.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0035N21, complete sequence Length = 128331 Score = 44.1 bits (22), Expect = 0.57 Identities = 22/22 (100%) Strand = Plus / Plus Query: 181 aatcacaagttcacaaccatcc 202 |||||||||||||||||||||| Sbjct: 43391 aatcacaagttcacaaccatcc 43412
>ref|NM_123524.3| Arabidopsis thaliana unknown protein AT5G41600 mRNA, complete cds Length = 1095 Score = 42.1 bits (21), Expect = 2.3 Identities = 27/29 (93%) Strand = Plus / Minus Query: 384 ttgtcctcatacttctcgtacaggacagg 412 |||||||||||||||||||| || ||||| Sbjct: 747 ttgtcctcatacttctcgtagagtacagg 719
>gb|AC115933.7| Mus musculus chromosome 3, clone RP24-539I8, complete sequence Length = 187920 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 262 tgttctaatgctgcttcttgt 282 ||||||||||||||||||||| Sbjct: 82976 tgttctaatgctgcttcttgt 82956
>gb|AC073054.2| Homo sapiens BAC clone RP11-106F1 from 7, complete sequence Length = 154419 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 257 tctactgttctaatgctgcttcttg 281 |||||||||||||| |||||||||| Sbjct: 84467 tctactgttctaattctgcttcttg 84491
>gb|AY150449.1| Arabidopsis thaliana unknown protein (At5g41600) mRNA, complete cds Length = 805 Score = 42.1 bits (21), Expect = 2.3 Identities = 27/29 (93%) Strand = Plus / Minus Query: 384 ttgtcctcatacttctcgtacaggacagg 412 |||||||||||||||||||| || ||||| Sbjct: 647 ttgtcctcatacttctcgtagagtacagg 619
>gb|AY035169.1| Arabidopsis thaliana unknown protein (At5g41600) mRNA, complete cds Length = 1061 Score = 42.1 bits (21), Expect = 2.3 Identities = 27/29 (93%) Strand = Plus / Minus Query: 384 ttgtcctcatacttctcgtacaggacagg 412 |||||||||||||||||||| || ||||| Sbjct: 701 ttgtcctcatacttctcgtagagtacagg 673
>gb|AY057638.1| Arabidopsis thaliana AT5g41600/MBK23_13 mRNA, complete cds Length = 1103 Score = 42.1 bits (21), Expect = 2.3 Identities = 27/29 (93%) Strand = Plus / Minus Query: 384 ttgtcctcatacttctcgtacaggacagg 412 |||||||||||||||||||| || ||||| Sbjct: 747 ttgtcctcatacttctcgtagagtacagg 719
>gb|AE010300.1| Leptospira interrogans serovar lai str. 56601 chromosome I, complete sequence Length = 4332241 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 368 tccaaaagcatcaatcttgtc 388 ||||||||||||||||||||| Sbjct: 2376527 tccaaaagcatcaatcttgtc 2376547
>dbj|AB005233.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MBK23 Length = 79837 Score = 42.1 bits (21), Expect = 2.3 Identities = 27/29 (93%) Strand = Plus / Minus Query: 384 ttgtcctcatacttctcgtacaggacagg 412 |||||||||||||||||||| || ||||| Sbjct: 32300 ttgtcctcatacttctcgtagagtacagg 32272
>gb|AE016823.1| Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130, chromosome I, complete sequence Length = 4277185 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 368 tccaaaagcatcaatcttgtc 388 ||||||||||||||||||||| Sbjct: 1904909 tccaaaagcatcaatcttgtc 1904889
>ref|NM_130268.2| Arabidopsis thaliana ATPase, coupled to transmembrane movement of substances AT2G47000 mRNA, complete cds Length = 4001 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 363 ttctctccaaaagcatcaat 382 |||||||||||||||||||| Sbjct: 281 ttctctccaaaagcatcaat 262
>gb|AC130601.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0108E17, complete sequence Length = 139829 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 182 atcacaagttcacaaccatc 201 |||||||||||||||||||| Sbjct: 132529 atcacaagttcacaaccatc 132548
>gb|AC108873.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1005_B11, complete sequence Length = 162772 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 182 atcacaagttcacaaccatc 201 |||||||||||||||||||| Sbjct: 6331 atcacaagttcacaaccatc 6350
>gb|AY596554.1| Saccharum officinarum clone SCRFLR1012E12, complete sequence Length = 1197 Score = 40.1 bits (20), Expect = 9.0 Identities = 83/104 (79%) Strand = Plus / Plus Query: 378 tcaatcttgtcctcatacttctcgtacaggacaggcacggtgtagagtaccatgaagact 437 ||||||| ||||| |||||||| ||||||||||| || |||| || |||| ||||| Sbjct: 423 tcaatctgatcctcgtacttctcatacaggacaggtactgtgtgcagcaccacaaagaca 482 Query: 438 atgtagaacaaggtgaggaaattgcaggagctgccaagagcaga 481 ||||| | ||||| | ||| |||||| |||| |||||| |||| Sbjct: 483 atgtaaaccaaggacaagaagttgcagcagcttccaagaacaga 526
>gb|BC063719.1| Xenopus laevis hypothetical protein MGC68665, mRNA (cDNA clone MGC:68665 IMAGE:4032810), complete cds Length = 6579 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 221 tgatcaactttgaagataaa 240 |||||||||||||||||||| Sbjct: 5558 tgatcaactttgaagataaa 5539
>gb|CP000300.1| Methanococcoides burtonii DSM 6242, complete genome Length = 2575032 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 247 cagggtaatctctactgttc 266 |||||||||||||||||||| Sbjct: 1171459 cagggtaatctctactgttc 1171478
>gb|AC110607.7| Homo sapiens chromosome 15, clone CTD-2632K10, complete sequence Length = 160452 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 466 agctgccaagagcagagagg 485 |||||||||||||||||||| Sbjct: 53624 agctgccaagagcagagagg 53643
>gb|AC138638.11| Mus musculus chromosome 8, clone RP23-380M21, complete sequence Length = 168821 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 174 gacatggaatcacaagttca 193 |||||||||||||||||||| Sbjct: 597 gacatggaatcacaagttca 578
>gb|AC004411.3| Arabidopsis thaliana chromosome 2 clone F14M4 map CIC06C03, complete sequence Length = 106329 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 363 ttctctccaaaagcatcaat 382 |||||||||||||||||||| Sbjct: 45109 ttctctccaaaagcatcaat 45090
>gb|AC002334.3| Arabidopsis thaliana chromosome 2 clone F25I18 map TEn5, complete sequence Length = 93158 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 182 atcacaagttcacaaccatc 201 |||||||||||||||||||| Sbjct: 30966 atcacaagttcacaaccatc 30947
>gb|AC079634.3|AC079634 Genomic Sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0045C13, from Chromosome 10, complete sequence Length = 161250 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 180 gaatcacaagttcacaacca 199 |||||||||||||||||||| Sbjct: 19825 gaatcacaagttcacaacca 19806
>gb|AE015928.1| Bacteroides thetaiotaomicron VPI-5482, complete genome Length = 6260361 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 429 atgaagactatgtagaacaa 448 |||||||||||||||||||| Sbjct: 2317446 atgaagactatgtagaacaa 2317427
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 179 ggaatcacaagttcacaacc 198 |||||||||||||||||||| Sbjct: 4386047 ggaatcacaagttcacaacc 4386028
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 182 atcacaagttcacaaccatc 201 |||||||||||||||||||| Sbjct: 24407528 atcacaagttcacaaccatc 24407547
>dbj|AP003902.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1110C07 Length = 173859 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 181 aatcacaagttcacaaccat 200 |||||||||||||||||||| Sbjct: 121753 aatcacaagttcacaaccat 121772
>dbj|AP003303.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0704D04 Length = 147638 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 182 atcacaagttcacaaccatc 201 |||||||||||||||||||| Sbjct: 78994 atcacaagttcacaaccatc 78975
>dbj|AP003216.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBa0090K04 Length = 152556 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 182 atcacaagttcacaaccatc 201 |||||||||||||||||||| Sbjct: 47112 atcacaagttcacaaccatc 47093
>dbj|AP003835.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1506_G02 Length = 106742 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 179 ggaatcacaagttcacaacc 198 |||||||||||||||||||| Sbjct: 25896 ggaatcacaagttcacaacc 25877
>dbj|AP004097.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1792_D02 Length = 141649 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 182 atcacaagttcacaaccatc 201 |||||||||||||||||||| Sbjct: 35734 atcacaagttcacaaccatc 35753
>emb|CT573421.5| M.truncatula DNA sequence from clone MTH2-27B10 on chromosome 3, complete sequence Length = 123669 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 451 tgaggaaattgcaggagctg 470 |||||||||||||||||||| Sbjct: 113133 tgaggaaattgcaggagctg 113152
>gb|AC102210.6| Mus musculus chromosome 8, clone RP24-351F4, complete sequence Length = 165443 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 174 gacatggaatcacaagttca 193 |||||||||||||||||||| Sbjct: 78941 gacatggaatcacaagttca 78960 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,038,193 Number of Sequences: 3902068 Number of extensions: 5038193 Number of successful extensions: 94307 Number of sequences better than 10.0: 57 Number of HSP's better than 10.0 without gapping: 60 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 93899 Number of HSP's gapped (non-prelim): 399 length of query: 657 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 634 effective length of database: 17,143,297,704 effective search space: 10868850744336 effective search space used: 10868850744336 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)