ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal33i13
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 139 1e-29
2dbj|AP005419.3| Oryza sativa (japonica cultivar-group) genomic D... 139 1e-29
3dbj|AK111977.1| Oryza sativa (japonica cultivar-group) cDNA clon... 139 1e-29
4gb|AC155236.2| Mus musculus BAC clone RP24-427K17 from chromosom... 48 0.033
5gb|AC025362.12| Homo sapiens chromosome 17, clone RP11-89H15, co... 46 0.13
6gb|AC005803.1|AC005803 Homo sapiens chromosome 17, clone hRPK.21... 46 0.13
7gb|AC105976.13| Mus musculus chromosome 5, clone RP24-315H14, co... 44 0.52
8gb|CP000110.1| Synechococcus sp. CC9605, complete genome 42 2.0
9gb|AC099037.2| Drosophila melanogaster clone BACR27P17, complete... 42 2.0
10gb|AC123740.12| Mus musculus chromosome 17, clone RP24-94I20, co... 42 2.0
11gb|AC125536.3| Mus musculus BAC clone RP24-142N21 from chromosom... 42 2.0
12gb|AC104396.7| Mus musculus BAC clone RP23-413J8 from chromosome... 42 2.0
13ref|XM_804841.1| Trypanosoma cruzi strain CL Brener hypothetical... 42 2.0
14ref|XM_810811.1| Trypanosoma cruzi strain CL Brener hypothetical... 42 2.0
15emb|AL031643.1|HS769D20 Human DNA sequence from clone RP4-769D20... 42 2.0
16gb|AC153926.10| Mus musculus 10 BAC RP23-68M7 (Roswell Park Canc... 42 2.0
17ref|NM_057825.3| Drosophila melanogaster Rhythmically expressed ... 42 2.0
18gb|AY071459.1| Drosophila melanogaster RE54049 full length cDNA 42 2.0
19gb|AY061022.1| Drosophila melanogaster HL04722 full length cDNA 42 2.0
20gb|AC007925.5|AC007925 Drosophila melanogaster, chromosome 2R, r... 42 2.0
21emb|AL929228.5| Mouse DNA sequence from clone RP23-359E23 on chr... 42 2.0
22emb|AL110118.7|CNS018P3 Human chromosome 14 DNA sequence BAC R-3... 42 2.0
23gb|AC005710.2|AC005710 Drosophila melanogaster, chromosome 2R, r... 42 2.0
24gb|AE003465.3| Drosophila melanogaster chromosome 2R, section 72... 42 2.0
25gb|U65105.1|DMU65105 Drosophila melanogaster Dreg-5 mRNA, comple... 42 2.0
26emb|AL935178.12| Zebrafish DNA sequence from clone CH211-180B9 i... 42 2.0
27emb|CT010467.6| Mouse DNA sequence from clone RP23-81C12 on chro... 42 2.0
28emb|CT025520.10| Mouse DNA sequence from clone RP23-393E22 on ch... 42 2.0
29gb|AC123689.8| Mus musculus chromosome 15, clone RP23-321P10, co... 42 2.0
30gb|AC157602.8| Mus musculus chromosome 15 clone RP23-104H10, com... 42 2.0
31emb|AL731678.17| Mouse DNA sequence from clone RP23-39H12 on chr... 42 2.0
32emb|AL671185.8| Mouse DNA sequence from clone RP23-192N1 on chro... 42 2.0
33emb|AL591953.8| Mouse DNA sequence from clone RP23-381N9 on chro... 42 2.0
34gb|AC163675.4| Mus musculus BAC clone RP23-9G21 from chromosome ... 40 8.1
35gb|AC160527.9| Mus musculus chromosome 7, clone RP24-269P21, com... 40 8.1
36gb|AE014850.1| Plasmodium falciparum 3D7 chromosome 12, section ... 40 8.1
37gb|AC159310.3| Mus musculus BAC clone RP23-158N20 from chromosom... 40 8.1
38gb|AC159298.3| Mus musculus BAC clone RP23-265N1 from chromosome... 40 8.1
39gb|AC111135.10| Mus musculus chromosome 9, clone RP23-349N4, com... 40 8.1
40gb|AC132581.4| Mus musculus BAC clone RP24-390D8 from chromosome... 40 8.1
41gb|AC164554.2| Mus musculus BAC clone RP23-351O14 from chromosom... 40 8.1
42gb|AC158136.11| Mus musculus chromosome 7, clone RP23-58I15, com... 40 8.1
43gb|AC126270.4| Mus musculus BAC clone RP23-233A12 from chromosom... 40 8.1
44ref|XM_648880.1| Entamoeba histolytica HM-1:IMSS hypothetical pr... 40 8.1
45gb|AC004987.2| Homo sapiens PAC clone RP5-1173I20 from 7, comple... 40 8.1
46gb|AC102116.8| Mus musculus chromosome 3, clone RP23-149A10, com... 40 8.1
47gb|AC058789.20| Mus musculus strain C57BL/6J clone rp23-428p20 m... 40 8.1
48gb|AC084243.7| Homo sapiens chromosome 11, clone CTD-3224I3, com... 40 8.1
49gb|AC135849.6| Pan troglodytes clone ptb-33n14, complete sequence 40 8.1
50gb|AC109588.2| Homo sapiens BAC clone RP11-180C1 from 4, complet... 40 8.1
51gb|CP000237.1| Neorickettsia sennetsu strain Miyayama, complete ... 40 8.1
52dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.1
53gb|AC018554.7| Homo sapiens chromosome 16 clone RP11-457D20, com... 40 8.1
54gb|AC084471.1|AC084471 Caenorhabditis briggsae cosmid CB048J20, ... 40 8.1
55gb|AC078845.2|AC078845 Homo sapiens chromosome 7 clone RP11-707A... 40 8.1
56gb|AY190961.1| Drosophila willistoni clone DWIF01_25_A10 (D1458)... 40 8.1
57dbj|AP005313.3| Oryza sativa (japonica cultivar-group) genomic D... 40 8.1
58dbj|AP004818.3| Oryza sativa (japonica cultivar-group) genomic D... 40 8.1
59dbj|AP004809.3| Oryza sativa (japonica cultivar-group) genomic D... 40 8.1
60dbj|AP005700.3| Oryza sativa (japonica cultivar-group) genomic D... 40 8.1
61dbj|AK108901.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 8.1
62gb|AC131731.4| Mus musculus BAC clone RP23-117K10 from 3, comple... 40 8.1
63gb|AC175116.2| Mus musculus BAC clone RP23-396H16 from chromosom... 40 8.1
64emb|CT009630.16| Mouse DNA sequence from clone RP23-12B13 on chr... 40 8.1
65gb|AC129329.3| Mus musculus BAC clone RP23-43M12 from 10, comple... 40 8.1
66gb|AC164122.5| Mus musculus BAC clone RP24-409O23 from chromosom... 40 8.1
67gb|AC169807.2| Rhesus Macaque CHR4 BAC CH250-23P16 (Children's H... 40 8.1
68emb|AL732330.14| Mouse DNA sequence from clone RP23-130L11 on ch... 40 8.1
69gb|AC155335.1| Brassica rapa subsp. pekinensis chromosome Cytoge... 40 8.1
70emb|AL591032.19| Mouse DNA sequence from clone RP22-211A10 on ch... 40 8.1
71emb|AL607123.22| Mouse DNA sequence from clone RP23-391E6 on chr... 40 8.1 
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score =  139 bits (70), Expect = 1e-29
 Identities = 127/146 (86%)
 Strand = Plus / Plus

                                                                            
Query: 403      gggaaaaagtcatccatgccaagtacaggctccaatgccttgacgacctccctcatggat 462
                ||||| ||||||||||||||||| ||||||||||  || ||||| ||||||||||| |  
Sbjct: 16368145 gggaagaagtcatccatgccaagcacaggctccagggctttgacaacctccctcattgtg 16368204

                                                                            
Query: 463      ggtcgggacttggggttttgactcagacacttgtacgccaccaacgcagccacctcagca 522
                || | |||||| ||||| | |||||||||||||||||||||||| || ||||||||||||
Sbjct: 16368205 ggcctggacttagggttctcactcagacacttgtacgccaccaatgccgccacctcagca 16368264

                                          
Query: 523      cccttacacgagtactgacactcgag 548
                ||||  ||||||||||| ||||||||
Sbjct: 16368265 ccctggcacgagtactggcactcgag 16368290



 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 160      gcccctctttcccggtggtaactt 183
                |||||||||||||||||| |||||
Sbjct: 10799985 gcccctctttcccggtggcaactt 10799962
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>dbj|AP005419.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0046G12
          Length = 189391

 Score =  139 bits (70), Expect = 1e-29
 Identities = 127/146 (86%)
 Strand = Plus / Plus

                                                                         
Query: 403   gggaaaaagtcatccatgccaagtacaggctccaatgccttgacgacctccctcatggat 462
             ||||| ||||||||||||||||| ||||||||||  || ||||| ||||||||||| |  
Sbjct: 56692 gggaagaagtcatccatgccaagcacaggctccagggctttgacaacctccctcattgtg 56751

                                                                         
Query: 463   ggtcgggacttggggttttgactcagacacttgtacgccaccaacgcagccacctcagca 522
             || | |||||| ||||| | |||||||||||||||||||||||| || ||||||||||||
Sbjct: 56752 ggcctggacttagggttctcactcagacacttgtacgccaccaatgccgccacctcagca 56811

                                       
Query: 523   cccttacacgagtactgacactcgag 548
             ||||  ||||||||||| ||||||||
Sbjct: 56812 ccctggcacgagtactggcactcgag 56837
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>dbj|AK111977.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-007-H12, full
            insert sequence
          Length = 1769

 Score =  139 bits (70), Expect = 1e-29
 Identities = 127/146 (86%)
 Strand = Plus / Minus

                                                                        
Query: 403  gggaaaaagtcatccatgccaagtacaggctccaatgccttgacgacctccctcatggat 462
            ||||| ||||||||||||||||| ||||||||||  || ||||| ||||||||||| |  
Sbjct: 1263 gggaagaagtcatccatgccaagcacaggctccagggctttgacaacctccctcattgtg 1204

                                                                        
Query: 463  ggtcgggacttggggttttgactcagacacttgtacgccaccaacgcagccacctcagca 522
            || | |||||| ||||| | |||||||||||||||||||||||| || ||||||||||||
Sbjct: 1203 ggcctggacttagggttctcactcagacacttgtacgccaccaatgccgccacctcagca 1144

                                      
Query: 523  cccttacacgagtactgacactcgag 548
            ||||  ||||||||||| ||||||||
Sbjct: 1143 ccctggcacgagtactggcactcgag 1118
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>gb|AC155236.2| Mus musculus BAC clone RP24-427K17 from chromosome 12, complete
             sequence
          Length = 126917

 Score = 48.1 bits (24), Expect = 0.033
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                         
Query: 25    aagaaaagaaagaaacacaatccacaat 52
             ||||||||||||||||| ||||||||||
Sbjct: 78331 aagaaaagaaagaaacataatccacaat 78304
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>gb|AC025362.12| Homo sapiens chromosome 17, clone RP11-89H15, complete sequence
          Length = 154664

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                        
Query: 302   gatgcttctgatgatggctttgttgtt 328
             |||| ||||||||||||||||||||||
Sbjct: 39357 gatgtttctgatgatggctttgttgtt 39331
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>gb|AC005803.1|AC005803 Homo sapiens chromosome 17, clone hRPK.214_C_8, complete sequence
          Length = 162473

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                         
Query: 302    gatgcttctgatgatggctttgttgtt 328
              |||| ||||||||||||||||||||||
Sbjct: 161530 gatgtttctgatgatggctttgttgtt 161504
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>gb|AC105976.13| Mus musculus chromosome 5, clone RP24-315H14, complete sequence
          Length = 188130

 Score = 44.1 bits (22), Expect = 0.52
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 24    gaagaaaagaaagaaacacaat 45
             ||||||||||||||||||||||
Sbjct: 70434 gaagaaaagaaagaaacacaat 70413
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>gb|CP000110.1| Synechococcus sp. CC9605, complete genome
          Length = 2510659

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 320    tttgttgtttctcctcagtct 340
              |||||||||||||||||||||
Sbjct: 338815 tttgttgtttctcctcagtct 338835
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>gb|AC099037.2| Drosophila melanogaster clone BACR27P17, complete sequence
          Length = 193320

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 354   catcatcttgtcctcctccac 374
             |||||||||||||||||||||
Sbjct: 69093 catcatcttgtcctcctccac 69073
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>gb|AC123740.12| Mus musculus chromosome 17, clone RP24-94I20, complete sequence
          Length = 167513

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 25    aagaaaagaaagaaacacaat 45
             |||||||||||||||||||||
Sbjct: 47962 aagaaaagaaagaaacacaat 47982
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>gb|AC125536.3| Mus musculus BAC clone RP24-142N21 from chromosome 8, complete sequence
          Length = 199356

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 19     atcttgaagaaaagaaagaaa 39
              |||||||||||||||||||||
Sbjct: 135947 atcttgaagaaaagaaagaaa 135967
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>gb|AC104396.7| Mus musculus BAC clone RP23-413J8 from chromosome 3, complete sequence
          Length = 195860

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 341    ccaccttcatgtccatcatct 361
              |||||||||||||||||||||
Sbjct: 124622 ccaccttcatgtccatcatct 124602
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>ref|XM_804841.1| Trypanosoma cruzi strain CL Brener hypothetical protein
            (Tc00.1047053506673.69) partial mRNA
          Length = 4090

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 432  ctccaatgccttgacgacctc 452
            |||||||||||||||||||||
Sbjct: 1482 ctccaatgccttgacgacctc 1462
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>ref|XM_810811.1| Trypanosoma cruzi strain CL Brener hypothetical protein
            (Tc00.1047053504827.21) partial mRNA
          Length = 4451

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 432  ctccaatgccttgacgacctc 452
            |||||||||||||||||||||
Sbjct: 1482 ctccaatgccttgacgacctc 1462
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>emb|AL031643.1|HS769D20 Human DNA sequence from clone RP4-769D20 on chromosome Xp21.1-21.3
              Contains the 5' end of four variants of the DMD gene for
              dystrophin (muscular dystrophy, Duchenne and Becker types),
              complete sequence
          Length = 133889

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 93     tatgcatatatacataccttc 113
              |||||||||||||||||||||
Sbjct: 120466 tatgcatatatacataccttc 120486
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>gb|AC153926.10| Mus musculus 10 BAC RP23-68M7 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 191655

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 87     cagtagtatgcatatatacat 107
              |||||||||||||||||||||
Sbjct: 132189 cagtagtatgcatatatacat 132169
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>ref|NM_057825.3| Drosophila melanogaster Rhythmically expressed gene 5 CG2928-RA
            (Reg-5), mRNA
          Length = 1654

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 354  catcatcttgtcctcctccac 374
            |||||||||||||||||||||
Sbjct: 1183 catcatcttgtcctcctccac 1163
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>gb|AY071459.1| Drosophila melanogaster RE54049 full length cDNA
          Length = 1667

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 354  catcatcttgtcctcctccac 374
            |||||||||||||||||||||
Sbjct: 1185 catcatcttgtcctcctccac 1165
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>gb|AY061022.1| Drosophila melanogaster HL04722 full length cDNA
          Length = 1775

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 354  catcatcttgtcctcctccac 374
            |||||||||||||||||||||
Sbjct: 1289 catcatcttgtcctcctccac 1269
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>gb|AC007925.5|AC007925 Drosophila melanogaster, chromosome 2R, region 60E-60E, BAC clone
              BACR03B07, complete sequence
          Length = 170089

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 354    catcatcttgtcctcctccac 374
              |||||||||||||||||||||
Sbjct: 138917 catcatcttgtcctcctccac 138937
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>emb|AL929228.5| Mouse DNA sequence from clone RP23-359E23 on chromosome 2, complete
             sequence
          Length = 212717

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 21    cttgaagaaaagaaagaaacacaat 45
             ||||||||| |||||||||||||||
Sbjct: 78524 cttgaagaagagaaagaaacacaat 78548
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>emb|AL110118.7|CNS018P3 Human chromosome 14 DNA sequence BAC R-371E8 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 192265

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 19    atcttgaagaaaagaaagaaa 39
             |||||||||||||||||||||
Sbjct: 61376 atcttgaagaaaagaaagaaa 61356
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>gb|AC005710.2|AC005710 Drosophila melanogaster, chromosome 2R, region 60E1-60E2, P1 clone
             DS04938, complete sequence
          Length = 57955

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 354   catcatcttgtcctcctccac 374
             |||||||||||||||||||||
Sbjct: 53394 catcatcttgtcctcctccac 53374
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>gb|AE003465.3| Drosophila melanogaster chromosome 2R, section 72 of 73 of the complete
              sequence
          Length = 343833

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 354    catcatcttgtcctcctccac 374
              |||||||||||||||||||||
Sbjct: 101070 catcatcttgtcctcctccac 101090
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>gb|U65105.1|DMU65105 Drosophila melanogaster Dreg-5 mRNA, complete cds
          Length = 1692

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 354  catcatcttgtcctcctccac 374
            |||||||||||||||||||||
Sbjct: 1218 catcatcttgtcctcctccac 1198
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>emb|AL935178.12| Zebrafish DNA sequence from clone CH211-180B9 in linkage group 22,
             complete sequence
          Length = 144027

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 23    tgaagaaaagaaagaaacaca 43
             |||||||||||||||||||||
Sbjct: 72052 tgaagaaaagaaagaaacaca 72032
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>emb|CT010467.6| Mouse DNA sequence from clone RP23-81C12 on chromosome 17, complete
              sequence
          Length = 216559

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 25     aagaaaagaaagaaacacaat 45
              |||||||||||||||||||||
Sbjct: 139521 aagaaaagaaagaaacacaat 139541
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>emb|CT025520.10| Mouse DNA sequence from clone RP23-393E22 on chromosome 16, complete
              sequence
          Length = 220149

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 15     ccctatcttgaagaaaagaaagaaa 39
              |||||||||||| ||||||||||||
Sbjct: 187975 ccctatcttgaaaaaaagaaagaaa 187951
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>gb|AC123689.8| Mus musculus chromosome 15, clone RP23-321P10, complete sequence
          Length = 218071

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 101    tatacataccttctatctaca 121
              |||||||||||||||||||||
Sbjct: 183216 tatacataccttctatctaca 183196
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>gb|AC157602.8| Mus musculus chromosome 15 clone RP23-104H10, complete sequence
          Length = 211648

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 101    tatacataccttctatctaca 121
              |||||||||||||||||||||
Sbjct: 144016 tatacataccttctatctaca 144036
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>emb|AL731678.17| Mouse DNA sequence from clone RP23-39H12 on chromosome X, complete
              sequence
          Length = 230186

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 15     ccctatcttgaagaaaagaaagaaa 39
              |||| ||||||||||||||||||||
Sbjct: 203843 ccctgtcttgaagaaaagaaagaaa 203819
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>emb|AL671185.8| Mouse DNA sequence from clone RP23-192N1 on chromosome X, complete
             sequence
          Length = 229574

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 21    cttgaagaaaagaaagaaaca 41
             |||||||||||||||||||||
Sbjct: 42473 cttgaagaaaagaaagaaaca 42453
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>emb|AL591953.8| Mouse DNA sequence from clone RP23-381N9 on chromosome 5, complete
             sequence
          Length = 172613

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 93    tatgcatatatacataccttc 113
             |||||||||||||||||||||
Sbjct: 35440 tatgcatatatacataccttc 35420
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>gb|AC163675.4| Mus musculus BAC clone RP23-9G21 from chromosome 6, complete sequence
          Length = 243690

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 301    tgatgcttctgatgatggctttgttgtt 328
              ||||||||||| ||||| ||||||||||
Sbjct: 135190 tgatgcttctgctgatgtctttgttgtt 135217
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>gb|AC160527.9| Mus musculus chromosome 7, clone RP24-269P21, complete sequence
          Length = 161504

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 327    tttctcctcagtctccacct 346
              ||||||||||||||||||||
Sbjct: 152062 tttctcctcagtctccacct 152043
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>gb|AE014850.1| Plasmodium falciparum 3D7 chromosome 12, section 7 of 9 of the complete
              sequence
          Length = 250713

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 27     gaaaagaaagaaacacaatc 46
              ||||||||||||||||||||
Sbjct: 159502 gaaaagaaagaaacacaatc 159521
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>gb|AC159310.3| Mus musculus BAC clone RP23-158N20 from chromosome 6, complete sequence
          Length = 222024

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 301   tgatgcttctgatgatggctttgttgtt 328
             ||||||||||| ||||| ||||||||||
Sbjct: 99504 tgatgcttctgctgatgtctttgttgtt 99531
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>gb|AC159298.3| Mus musculus BAC clone RP23-265N1 from chromosome 5, complete sequence
          Length = 175995

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 25     aagaaaagaaagaaacacaa 44
              ||||||||||||||||||||
Sbjct: 114710 aagaaaagaaagaaacacaa 114729
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>gb|AC111135.10| Mus musculus chromosome 9, clone RP23-349N4, complete sequence
          Length = 215213

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 30    aagaaagaaacacaatccac 49
             ||||||||||||||||||||
Sbjct: 13695 aagaaagaaacacaatccac 13676
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>gb|AC132581.4| Mus musculus BAC clone RP24-390D8 from chromosome 6, complete sequence
          Length = 172240

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 301   tgatgcttctgatgatggctttgttgtt 328
             ||||||||||| ||||| ||||||||||
Sbjct: 16349 tgatgcttctgctgatgtctttgttgtt 16322
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>gb|AC164554.2| Mus musculus BAC clone RP23-351O14 from chromosome 17, complete
             sequence
          Length = 192632

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 20    tcttgaagaaaagaaagaaa 39
             ||||||||||||||||||||
Sbjct: 30646 tcttgaagaaaagaaagaaa 30627
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>gb|AC158136.11| Mus musculus chromosome 7, clone RP23-58I15, complete sequence
          Length = 250563

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 327   tttctcctcagtctccacct 346
             ||||||||||||||||||||
Sbjct: 15370 tttctcctcagtctccacct 15351
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>gb|AC126270.4| Mus musculus BAC clone RP23-233A12 from chromosome 10, complete sequence
          Length = 208709

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 25     aagaaaagaaagaaacacaa 44
              ||||||||||||||||||||
Sbjct: 193564 aagaaaagaaagaaacacaa 193583
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>ref|XM_648880.1| Entamoeba histolytica HM-1:IMSS hypothetical protein (67.t00001)
            partial mRNA
          Length = 2313

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 21   cttgaagaaaagaaagaaac 40
            ||||||||||||||||||||
Sbjct: 1570 cttgaagaaaagaaagaaac 1589
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>gb|AC004987.2| Homo sapiens PAC clone RP5-1173I20 from 7, complete sequence
          Length = 111158

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 19    atcttgaagaaaagaaagaa 38
             ||||||||||||||||||||
Sbjct: 67844 atcttgaagaaaagaaagaa 67825
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>gb|AC102116.8| Mus musculus chromosome 3, clone RP23-149A10, complete sequence
          Length = 204383

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 92   gtatgcatatatacatacct 111
            ||||||||||||||||||||
Sbjct: 1461 gtatgcatatatacatacct 1480
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>gb|AC058789.20| Mus musculus strain C57BL/6J clone rp23-428p20 map 5, complete sequence
          Length = 181121

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 25     aagaaaagaaagaaacacaa 44
              ||||||||||||||||||||
Sbjct: 112566 aagaaaagaaagaaacacaa 112585
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>gb|AC084243.7| Homo sapiens chromosome 11, clone CTD-3224I3, complete sequence
          Length = 154201

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 92     gtatgcatatatacatacct 111
              ||||||||||||||||||||
Sbjct: 118832 gtatgcatatatacatacct 118851
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>gb|AC135849.6| Pan troglodytes clone ptb-33n14, complete sequence
          Length = 72820

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 16    cctatcttgaagaaaagaaagaaa 39
             |||||||||||||||| |||||||
Sbjct: 24119 cctatcttgaagaaaaaaaagaaa 24142
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>gb|AC109588.2| Homo sapiens BAC clone RP11-180C1 from 4, complete sequence
          Length = 59441

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 29    aaagaaagaaacacaatcca 48
             ||||||||||||||||||||
Sbjct: 22744 aaagaaagaaacacaatcca 22725
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>gb|CP000237.1| Neorickettsia sennetsu strain Miyayama, complete genome
          Length = 859006

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 25    aagaaaagaaagaaacacaa 44
             ||||||||||||||||||||
Sbjct: 38059 aagaaaagaaagaaacacaa 38040
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 499      gccaccaacgcagccacctc 518
                ||||||||||||||||||||
Sbjct: 19903488 gccaccaacgcagccacctc 19903507
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>gb|AC018554.7| Homo sapiens chromosome 16 clone RP11-457D20, complete sequence
          Length = 216977

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 94    atgcatatatacataccttc 113
             ||||||||||||||||||||
Sbjct: 83472 atgcatatatacataccttc 83453
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>gb|AC084471.1|AC084471 Caenorhabditis briggsae cosmid CB048J20, complete sequence
          Length = 95539

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 26    agaaaagaaagaaacacaat 45
             ||||||||||||||||||||
Sbjct: 50264 agaaaagaaagaaacacaat 50283
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>gb|AC078845.2|AC078845 Homo sapiens chromosome 7 clone RP11-707A19, complete sequence
          Length = 161514

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 25     aagaaaagaaagaaacacaa 44
              ||||||||||||||||||||
Sbjct: 120865 aagaaaagaaagaaacacaa 120884
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>gb|AY190961.1| Drosophila willistoni clone DWIF01_25_A10 (D1458) genomic sequence
          Length = 36329

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 24   gaagaaaagaaagaaacaca 43
            ||||||||||||||||||||
Sbjct: 6274 gaagaaaagaaagaaacaca 6293
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>dbj|AP005313.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0512H04
          Length = 151049

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 160   gcccctctttcccggtggtaactt 183
             |||||||||||||||||| |||||
Sbjct: 23708 gcccctctttcccggtggcaactt 23685
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>dbj|AP004818.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0551A03
          Length = 173027

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 499    gccaccaacgcagccacctc 518
              ||||||||||||||||||||
Sbjct: 170533 gccaccaacgcagccacctc 170552
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>dbj|AP004809.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:B1018E06
          Length = 178499

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 499   gccaccaacgcagccacctc 518
             ||||||||||||||||||||
Sbjct: 41828 gccaccaacgcagccacctc 41847
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>dbj|AP005700.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
              clone:OSJNBb0085I16
          Length = 141701

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 160    gcccctctttcccggtggtaactt 183
              |||||||||||||||||| |||||
Sbjct: 136603 gcccctctttcccggtggcaactt 136580
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>dbj|AK108901.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-152-F06, full
           insert sequence
          Length = 1265

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 160 gcccctctttcccggtggtaactt 183
           |||||||||||||||||| |||||
Sbjct: 21  gcccctctttcccggtggcaactt 44
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>gb|AC131731.4| Mus musculus BAC clone RP23-117K10 from 3, complete sequence
          Length = 200232

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 92    gtatgcatatatacatacct 111
             ||||||||||||||||||||
Sbjct: 92587 gtatgcatatatacatacct 92606
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>gb|AC175116.2| Mus musculus BAC clone RP23-396H16 from chromosome 5, complete sequence
          Length = 210409

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 25     aagaaaagaaagaaacacaa 44
              ||||||||||||||||||||
Sbjct: 106630 aagaaaagaaagaaacacaa 106649
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>emb|CT009630.16| Mouse DNA sequence from clone RP23-12B13 on chromosome 17, complete
              sequence
          Length = 240447

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 20     tcttgaagaaaagaaagaaa 39
              ||||||||||||||||||||
Sbjct: 152211 tcttgaagaaaagaaagaaa 152230
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>gb|AC129329.3| Mus musculus BAC clone RP23-43M12 from 10, complete sequence
          Length = 176092

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 25    aagaaaagaaagaaacacaa 44
             ||||||||||||||||||||
Sbjct: 18361 aagaaaagaaagaaacacaa 18380
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>gb|AC164122.5| Mus musculus BAC clone RP24-409O23 from chromosome 6, complete sequence
          Length = 165015

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 106   ataccttctatctacaatct 125
             ||||||||||||||||||||
Sbjct: 41574 ataccttctatctacaatct 41555
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>gb|AC169807.2| Rhesus Macaque CHR4 BAC CH250-23P16 (Children's Hospital Oakland
             Research Institute Rhesus macaque Adult Male BAC Library)
             complete sequence
          Length = 172055

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 324   ttgtttctcctcagtctcca 343
             ||||||||||||||||||||
Sbjct: 54571 ttgtttctcctcagtctcca 54552
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>emb|AL732330.14| Mouse DNA sequence from clone RP23-130L11 on chromosome 2, complete
             sequence
          Length = 241418

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 92    gtatgcatatatacatacct 111
             ||||||||||||||||||||
Sbjct: 90728 gtatgcatatatacatacct 90709
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>gb|AC155335.1| Brassica rapa subsp. pekinensis chromosome Cytogenetic chromosome 1
             clone KBrH001H24, complete sequence
          Length = 118144

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 401   cagggaaaaagtcatccatg 420
             ||||||||||||||||||||
Sbjct: 29112 cagggaaaaagtcatccatg 29093
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>emb|AL591032.19| Mouse DNA sequence from clone RP22-211A10 on chromosome 4, complete
              sequence
          Length = 205573

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 20     tcttgaagaaaagaaagaaa 39
              ||||||||||||||||||||
Sbjct: 202416 tcttgaagaaaagaaagaaa 202397
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>emb|AL607123.22| Mouse DNA sequence from clone RP23-391E6 on chromosome 4, complete
             sequence
          Length = 149369

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 20    tcttgaagaaaagaaagaaa 39
             ||||||||||||||||||||
Sbjct: 31771 tcttgaagaaaagaaagaaa 31752


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7,204,159
Number of Sequences: 3902068
Number of extensions: 7204159
Number of successful extensions: 157756
Number of sequences better than 10.0: 71
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 157437
Number of HSP's gapped (non-prelim): 319
length of query: 592
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 569
effective length of database: 17,143,297,704
effective search space: 9754536393576
effective search space used: 9754536393576
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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