ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbaal33i03 |
|---|---|
| Clone Library Name | barley_pub |
>TT12_ARATH (Q9LYT3) TRANSPARENT TESTA 12 protein| Length = 507 Score = 75.1 bits (183), Expect = 2e-13 Identities = 44/151 (29%), Positives = 68/151 (45%) Frame = -1 Query: 680 ARLFTGSEVIAAEFAAITPLMMISIVLDSAQGVLSGVARGCGWQHLAALTNLVAFYFIGM 501 ++ FT + A + + PL+ +SI L+ Q +LSGVA G GWQ + A NLV +Y IG+ Sbjct: 381 SKAFTSDAEVIAAVSDLFPLLAVSIFLNGIQPILSGVAIGSGWQAVVAYVNLVTYYVIGL 440 Query: 500 PLAILFAFKLNFYTKVVIN*ELPHPCHCGMWGSEQLELHFEI**AGAMNRCTLFLQGLWS 321 P+ + FK +L + G+W Sbjct: 441 PIGCVLGFK-----------------------------------------TSLGVAGIWW 459 Query: 320 GLICGLTCQTSTLVVITARTKWSKIVDAMRQ 228 G+I G+ QT TL+V+T +T W+ V+ Q Sbjct: 460 GMIAGVILQTLTLIVLTLKTNWTSEVENAAQ 490
>YAO6_SCHPO (Q10085) Hypothetical protein C11D3.06 in chromosome I| Length = 455 Score = 50.8 bits (120), Expect = 4e-06 Identities = 23/70 (32%), Positives = 36/70 (51%) Frame = -1 Query: 686 LWARLFTGSEVIAAEFAAITPLMMISIVLDSAQGVLSGVARGCGWQHLAALTNLVAFYFI 507 ++ R+FT + A + PL+ + DS G + G RG G Q + A+ N+ A+Y Sbjct: 332 IYGRIFTNDPDVIQLVALVMPLVAAFQISDSLNGTMGGALRGTGRQKVGAIVNITAYYLF 391 Query: 506 GMPLAILFAF 477 +PL I AF Sbjct: 392 ALPLGIYLAF 401
>YD338_YEAST (Q05497) Hypothetical 77.8 kDa protein in MRPS28-HXT7 intergenic| region Length = 695 Score = 50.1 bits (118), Expect = 7e-06 Identities = 30/92 (32%), Positives = 47/92 (51%), Gaps = 6/92 (6%) Frame = -1 Query: 734 VFLAFSFIL------LLGIGHGLWARLFTGSEVIAAEFAAITPLMMISIVLDSAQGVLSG 573 V L+FSFI +L G L A +++ + A + PL+ I DS V Sbjct: 532 VGLSFSFIAGFINCCILVFGRNLIANIYSKDPEVIKLIAQVLPLVGIVQNFDSLNAVAGS 591 Query: 572 VARGCGWQHLAALTNLVAFYFIGMPLAILFAF 477 RG G Q L ++ NL+A+Y G+PLA++ ++ Sbjct: 592 CLRGQGMQSLGSIVNLMAYYLFGIPLALILSW 623
>NORM_SYNP6 (Q5MZD9) Probable multidrug resistance protein norM| (Multidrug-efflux transporter) Length = 464 Score = 32.3 bits (72), Expect = 1.6 Identities = 24/93 (25%), Positives = 43/93 (46%), Gaps = 9/93 (9%) Frame = -1 Query: 716 FILLLGIGHGLWARLFTG------SEVIAAEFAAITPLMMIS---IVLDSAQGVLSGVAR 564 ++LLL I L+ R G + V A P++ ++ +VLD Q V G Sbjct: 326 WMLLLAIPLALFPRAIVGIYVDLNNPVNAGLLNLALPMLRVASLALVLDGVQRVAMGALH 385 Query: 563 GCGWQHLAALTNLVAFYFIGMPLAILFAFKLNF 465 G + L +L+AF+ +G+ + + F+L + Sbjct: 386 GLQDTRIPLLLSLLAFWMVGVGSSAMLGFQLGW 418
>NORM_XYLFT (Q879Z5) Probable multidrug resistance protein norM| (Multidrug-efflux transporter) Length = 469 Score = 32.0 bits (71), Expect = 2.0 Identities = 20/84 (23%), Positives = 41/84 (48%) Frame = -1 Query: 707 LLGIGHGLWARLFTGSEVIAAEFAAITPLMMISIVLDSAQGVLSGVARGCGWQHLAALTN 528 +L +G+ + +T V+A+ + + I D Q + SGV RG + L Sbjct: 353 VLLLGYDVIVAAYTDDLVVASLASKLLLFAAIFQFPDGLQMLSSGVLRGMKDTRVPMLLA 412 Query: 527 LVAFYFIGMPLAILFAFKLNFYTK 456 +++++ +GMPL + F L + ++ Sbjct: 413 MISYWGLGMPLGLGLGFALEWNSR 436
>NORM_XYLFA (Q9PA34) Probable multidrug resistance protein norM| (Multidrug-efflux transporter) Length = 469 Score = 32.0 bits (71), Expect = 2.0 Identities = 20/84 (23%), Positives = 41/84 (48%) Frame = -1 Query: 707 LLGIGHGLWARLFTGSEVIAAEFAAITPLMMISIVLDSAQGVLSGVARGCGWQHLAALTN 528 +L +G+ + +T V+A+ + + I D Q + SGV RG + L Sbjct: 353 VLLLGYDVIVAAYTDDLVVASLASKLLLFAAIFQFPDGLQMLSSGVLRGMKDTRVPMLLA 412 Query: 527 LVAFYFIGMPLAILFAFKLNFYTK 456 +++++ +GMPL + F L + ++ Sbjct: 413 MISYWGLGMPLGLGLGFALEWNSR 436
>NORM_PSEPK (Q88CB9) Probable multidrug resistance protein norM| (Multidrug-efflux transporter) Length = 462 Score = 31.2 bits (69), Expect = 3.5 Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 3/63 (4%) Frame = -1 Query: 650 AAEFAAITPLMMISI---VLDSAQGVLSGVARGCGWQHLAALTNLVAFYFIGMPLAILFA 480 AA F L+M++ + D Q + G RG L LV ++ +G P A LF Sbjct: 353 AAIFQVAVQLLMVAAWFELFDGMQTIAMGSIRGLKDAKTTFLIGLVCYWLVGAPSAWLFT 412 Query: 479 FKL 471 F L Sbjct: 413 FTL 415
>R1A10_SOLDE (Q60CZ8) Putative late blight resistance protein homolog R1A-10| Length = 1306 Score = 30.8 bits (68), Expect = 4.5 Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 6/65 (9%) Frame = +1 Query: 226 SCRIASTILDHFVRAVITTSVLVWQVSPQIRPDHKPC------KKRVHLFIAPAHYISKW 387 +CR+ +LD + L+W QI KP K+ HL H + +W Sbjct: 842 ACRLHDVLLDFCKERAAEENFLLWINRDQIT---KPSSCVYSHKQHAHLAFTEMHNLVEW 898 Query: 388 SSSCS 402 S+SCS Sbjct: 899 SASCS 903
>R1A6_SOLDE (Q6L438) Putative late blight resistance protein homolog R1A-6| Length = 1247 Score = 30.8 bits (68), Expect = 4.5 Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 6/65 (9%) Frame = +1 Query: 226 SCRIASTILDHFVRAVITTSVLVWQVSPQIRPDHKPC------KKRVHLFIAPAHYISKW 387 +CR+ +LD + L+W QI KP K+ HL H + +W Sbjct: 842 ACRLHDVLLDFCKERAAEENFLLWINRDQIT---KPSSCVYSHKQHAHLAFTEMHNLVEW 898 Query: 388 SSSCS 402 S+SCS Sbjct: 899 SASCS 903
>R1A_SOLDE (Q8W1E0) Late blight resistance protein R1-A (Protein R1)| Length = 1293 Score = 30.4 bits (67), Expect = 5.9 Identities = 19/64 (29%), Positives = 27/64 (42%), Gaps = 6/64 (9%) Frame = +1 Query: 229 CRIASTILDHFVRAVITTSVLVWQVSPQIRPDHKPC------KKRVHLFIAPAHYISKWS 390 CR+ +LD + L+W QI KP K+ HL H + +WS Sbjct: 861 CRLHDVLLDFCKERAAEENFLLWINRDQIT---KPSSCVYSHKQHAHLAFTEMHNLVEWS 917 Query: 391 SSCS 402 +SCS Sbjct: 918 ASCS 921
>PKN3_HUMAN (Q6P5Z2) Serine/threonine-protein kinase N3 (EC 2.7.11.13) (Protein| kinase PKN-beta) (Protein-kinase C-related kinase 3) Length = 889 Score = 30.4 bits (67), Expect = 5.9 Identities = 24/85 (28%), Positives = 39/85 (45%) Frame = +1 Query: 436 SSQLITTLV*KLSLKAKRMANGMPMK*NATRFVSAARCCHPQPLATPDSTPCAESSTIEI 615 SSQ + L L +++ P++ TR + AA +PQP TP P A + T+++ Sbjct: 225 SSQKLDLLRLALEQLLEQLPPAHPLRSRVTRELRAAVPGYPQPSGTP-VKPTALTGTLQV 283 Query: 616 IMSGVMAANSAAITSLPVKSLAQRP 690 + G +A P +LA P Sbjct: 284 RLLGCEQLLTAVPGRSPAAALASSP 308
>R1B11_SOLDE (Q6L3Y2) Putative late blight resistance protein homolog R1B-11| Length = 1252 Score = 30.4 bits (67), Expect = 5.9 Identities = 16/60 (26%), Positives = 25/60 (41%) Frame = +1 Query: 226 SCRIASTILDHFVRAVITTSVLVWQVSPQIRPDHKPCKKRVHLFIAPAHYISKWSSSCSL 405 +CR+ +LD + L+W Q K+ HL + +WS+SCSL Sbjct: 864 ACRLHDVLLDFCKERAAEENFLLWIKRDQTTKAVYSHKQHAHLAFTEMDNLVEWSASCSL 923
>R1B8_SOLDE (Q6L3X3) Putative late blight resistance protein homolog R1B-8| Length = 1202 Score = 30.4 bits (67), Expect = 5.9 Identities = 16/60 (26%), Positives = 26/60 (43%) Frame = +1 Query: 226 SCRIASTILDHFVRAVITTSVLVWQVSPQIRPDHKPCKKRVHLFIAPAHYISKWSSSCSL 405 +CR+ +LD + + L+W Q K+ HL + +WS+SCSL Sbjct: 776 ACRLHDVLLDFCKKRAAEENFLLWINRDQSTKAVYSHKQHAHLAFTEMDNLVEWSASCSL 835
>R1B14_SOLDE (Q6L3Z7) Putative late blight resistance protein homolog R1B-14| Length = 1317 Score = 30.4 bits (67), Expect = 5.9 Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 4/64 (6%) Frame = +1 Query: 226 SCRIASTILDHFVRAVITTSVLVW----QVSPQIRPDHKPCKKRVHLFIAPAHYISKWSS 393 +CR+ +LD + L+W Q+S + HK + HL + +WS+ Sbjct: 857 ACRLHDVLLDFCKERAAEENFLLWINRDQISTKAVYSHK---QHAHLAFTEMDNLVEWSA 913 Query: 394 SCSL 405 SCSL Sbjct: 914 SCSL 917
>R1B17_SOLDE (Q6L403) Putative late blight resistance protein homolog R1B-17| Length = 1312 Score = 30.4 bits (67), Expect = 5.9 Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 4/64 (6%) Frame = +1 Query: 226 SCRIASTILDHFVRAVITTSVLVW----QVSPQIRPDHKPCKKRVHLFIAPAHYISKWSS 393 +CR+ +LD + L+W Q+S + HK + HL + +WS+ Sbjct: 857 ACRLHDVLLDFCKERAAEENFLLWINRDQISTKAVYSHK---QHAHLAFTEMDNLVEWSA 913 Query: 394 SCSL 405 SCSL Sbjct: 914 SCSL 917
>NORM_PHOLL (Q7N1G0) Probable multidrug resistance protein norM| (Multidrug-efflux transporter) Length = 453 Score = 30.4 bits (67), Expect = 5.9 Identities = 18/70 (25%), Positives = 29/70 (41%) Frame = -1 Query: 689 GLWARLFTGSEVIAAEFAAITPLMMISIVLDSAQGVLSGVARGCGWQHLAALTNLVAFYF 510 G + L+T + I L+ + DS Q LSG+ RG L ++ Sbjct: 337 GSFISLYTNDNGVIIIALNIIFLLCLFQFFDSCQAALSGILRGFHDTRSVFYAPLFGYWL 396 Query: 509 IGMPLAILFA 480 +G+PL + A Sbjct: 397 VGLPLGFILA 406
>NFE2_HUMAN (Q16621) Transcription factor NF-E2 45 kDa subunit (Nuclear factor,| erythroid-derived 2 45 kDa subunit) (p45 NF-E2) (Leucine zipper protein NF-E2) Length = 373 Score = 30.4 bits (67), Expect = 5.9 Identities = 15/41 (36%), Positives = 25/41 (60%) Frame = +3 Query: 438 LSVNYYLGVEVELEGKEDGQRHADEVERHKVR*RRQVLPSA 560 LS+NY +ELEG E G+R ++ VE + V ++P++ Sbjct: 148 LSLNYSDAESLELEGTEAGRRRSEYVEMYPVEYPYSLMPNS 188 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 108,741,860 Number of Sequences: 219361 Number of extensions: 2344754 Number of successful extensions: 7070 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 6711 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 7066 length of database: 80,573,946 effective HSP length: 109 effective length of database: 56,663,597 effective search space used: 7649585595 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
