ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal33h20
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ATG9_YEAST (Q12142) Autophagy-related protein 9 (Cytoplasm to va... 29 9.2
2Y040_MYCPN (P75074) Hypothetical protein MPN040 (B01_orf103b) 29 9.2
3MOK12_SCHPO (Q9UUL4) Cell wall alpha-1,3-glucan synthase mok12 (... 29 9.2

>ATG9_YEAST (Q12142) Autophagy-related protein 9 (Cytoplasm to vacuole|
           targeting protein 7)
          Length = 997

 Score = 29.3 bits (64), Expect = 9.2
 Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 4/36 (11%)
 Frame = +3

Query: 309 ITLHNDPIPAYQKPISLFRTSILTRAL----NICLI 404
           I L+N  I     PI LFRT++LT+ L    N+C++
Sbjct: 469 IALYNSDILNLSLPIPLFRTNVLTKTLEWNINLCVM 504



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>Y040_MYCPN (P75074) Hypothetical protein MPN040 (B01_orf103b)|
          Length = 103

 Score = 29.3 bits (64), Expect = 9.2
 Identities = 23/79 (29%), Positives = 37/79 (46%)
 Frame = +3

Query: 282 KRISFGLKNITLHNDPIPAYQKPISLFRTSILTRALNICLIS*SGVATSICPCVDSLALF 461
           KR SF +KN+T  +  + A  +    F +S    A ++C    S +  S C    S A  
Sbjct: 11  KRPSFDVKNLTKPSRLLSATLRSSCAFLSSASFFACSLCFFCCSSI--SFCSLASSSARL 68

Query: 462 EASNLY*AFFLRIVFQRIG 518
             S+ + +FF  ++F R G
Sbjct: 69  RYSSSH-SFFCWVLFSRSG 86



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>MOK12_SCHPO (Q9UUL4) Cell wall alpha-1,3-glucan synthase mok12 (EC 2.4.1.183)|
          Length = 2352

 Score = 29.3 bits (64), Expect = 9.2
 Identities = 12/35 (34%), Positives = 22/35 (62%)
 Frame = -2

Query: 335 WNRIIVQCYVFQSKTDSFRW*NPRQLFSLNNREIF 231
           WN++++Q  +  + T  F   +PR L+ L N++IF
Sbjct: 443 WNQMLIQDDMINANTKKF---DPRHLYGLTNQDIF 474


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 83,291,752
Number of Sequences: 219361
Number of extensions: 1634658
Number of successful extensions: 3353
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3295
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3352
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5310515667
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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