ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal33h09
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 86 1e-13
2gb|AC097627.1| Genomic sequence for Oryza sativa, Nipponbare str... 86 1e-13
3dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 86 1e-13
4dbj|AK104982.1| Oryza sativa (japonica cultivar-group) cDNA clon... 86 1e-13
5dbj|AK072547.1| Oryza sativa (japonica cultivar-group) cDNA clon... 86 1e-13
6gb|AE005674.1| Shigella flexneri 2a str. 301, complete genome 44 0.50
7ref|XM_464477.1| Oryza sativa (japonica cultivar-group), mRNA 44 0.50
8gb|AC004963.2| Homo sapiens PAC clone RP5-1102A12 from 7, comple... 44 0.50
9gb|AE014075.1| Escherichia coli CFT073, complete genome 44 0.50
10gb|CP000243.1| Escherichia coli UTI89, complete genome 44 0.50
11gb|U00096.2| Escherichia coli K-12 MG1655, complete genome 44 0.50
12dbj|AP009048.1| Escherichia coli W3110 DNA, complete genome 44 0.50
13dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.50
14gb|AE014073.1| Shigella flexneri 2a str. 2457T, complete genome 44 0.50
15dbj|AP004191.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.50
16dbj|AP004812.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.50
17gb|AE005174.2| Escherichia coli O157:H7 EDL933, complete genome 44 0.50
18emb|CT033245.1| Platynereis dumerilii EST IB0AAA24BC05EM1 44 0.50
19dbj|BA000007.2| Escherichia coli O157:H7 DNA, complete genome 44 0.50
20gb|CP000034.1| Shigella dysenteriae Sd197, complete genome 44 0.50
21gb|CP000036.1| Shigella boydii Sb227, complete genome 44 0.50
22gb|CP000038.1| Shigella sonnei Ss046, complete genome 44 0.50
23gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome 42 2.0
24ref|XM_508680.1| PREDICTED: Pan troglodytes similar to hypotheti... 42 2.0
25ref|XM_467581.1| Oryza sativa (japonica cultivar-group), mRNA 42 2.0
26ref|XM_506951.1| PREDICTED Oryza sativa (japonica cultivar-group... 42 2.0
27ref|XM_467582.1| Oryza sativa (japonica cultivar-group), mRNA 42 2.0
28gb|AC148650.1| Pan troglodytes chromosome X clone PTB-044F10 map... 42 2.0
29emb|AL354861.11| Human DNA sequence from clone RP11-180I4 on chr... 42 2.0
30gb|U52112.2| Homo sapiens chromosome X clone QLL-D9139, Qc-7G12,... 42 2.0
31gb|AC159035.2| Pan troglodytes BAC clone CH251-297P8 from chromo... 42 2.0
32gb|AC103562.6| Homo sapiens BAC clone RP11-608O21 from 4, comple... 42 2.0
33dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.0
34gb|AC161384.4| Gallus gallus BAC clone CH261-69B2 from chromosom... 42 2.0
35dbj|AP005382.3| Oryza sativa (japonica cultivar-group) genomic D... 42 2.0
36dbj|AP005284.3| Oryza sativa (japonica cultivar-group) genomic D... 42 2.0
37dbj|AK120552.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 2.0
38dbj|AK105959.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 2.0
39dbj|AK099532.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 2.0
40dbj|AK068514.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 2.0
41dbj|AK066637.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 2.0
42dbj|AK065834.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 2.0
43dbj|AK062565.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 2.0
44dbj|AK060455.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 2.0
45dbj|AK060172.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 2.0
46dbj|AP001148.4| Homo sapiens genomic DNA, chromosome 11q clone:R... 42 2.0
47gb|AC110553.10| Mus musculus chromosome 3, clone RP23-248D8, com... 40 7.9
48gb|CP000148.1| Geobacter metallireducens GS-15, complete genome 40 7.9
49gb|AC102334.10| Mus musculus chromosome 15, clone RP24-544N15, c... 40 7.9
50gb|AC144640.3| Carollia perspicillata clone 14D2, complete sequence 40 7.9
51gb|AC122832.4| Mus musculus BAC clone RP23-179D3 from 12, comple... 40 7.9
52gb|AC026231.4| Mus musculus strain C57BL6/J chromosome 5 clone R... 40 7.9
53emb|AL939127.1|SCO939127 Streptomyces coelicolor A3(2) complete ... 40 7.9
54emb|AL596182.28| Mouse DNA sequence from clone RP23-303F24 on ch... 40 7.9
55gb|AC084701.5| Homo sapiens chromosome 18, clone RP11-1005F9, co... 40 7.9
56dbj|AK140826.1| Mus musculus 16 days embryo head cDNA, RIKEN ful... 40 7.9
57dbj|AK140028.1| Mus musculus adult male corpora quadrigemina cDN... 40 7.9
58gb|AC013660.9| Homo sapiens, clone RP11-20A14, complete sequence 40 7.9
59ref|XM_625936.1| Cryptosporidium parvum Iowa II hypothetical pro... 40 7.9
60gb|AE016817.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10... 40 7.9
61dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 40 7.9
62dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete g... 40 7.9
63ref|NM_209577.1| Eremothecium gossypii ADR128Cp (ADR128C), mRNA 40 7.9
64gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome 40 7.9
65gb|AE017221.1| Thermus thermophilus HB27, complete genome 40 7.9
66emb|CT032401.1| Platynereis dumerilii EST IB0AAA38DF05EM1 40 7.9
67dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, comp... 40 7.9
68gb|AC157811.3| Mus musculus chromosome 1, clone RP24-377C24, com... 40 7.9
69gb|DP000018.1| Carollia perspicillata target 1 genomic scaffold 40 7.9
70emb|AL928801.6| Mouse DNA sequence from clone RP23-116P4 on chro... 40 7.9
71gb|AC102564.7| Mus musculus chromosome 1, clone RP23-210C12, com... 40 7.9
72gb|M21066.1|MUSIRF1A Mouse interferon regulatory factor 1 gene, ... 40 7.9 
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 55/59 (93%)
 Strand = Plus / Plus

                                                                       
Query: 332  gttgatcctggcgacgagctcgtcgccgcaggcctggtcccggaccttccagacgcact 390
            ||||||||||||||||||||||| ||||||||| | ||||| |||||||||||||||||
Sbjct: 5917 gttgatcctggcgacgagctcgtggccgcaggcttcgtccctgaccttccagacgcact 5975



 Score = 73.8 bits (37), Expect = 6e-10
 Identities = 52/57 (91%)
 Strand = Plus / Plus

                                                                     
Query: 522  gagagcacggagagcgtggggatgaggatgcggtgcagcgtgtccacgttgcccagc 578
            ||||||||||||||||||||||||||||||  ||| || ||||| ||||||||||||
Sbjct: 6095 gagagcacggagagcgtggggatgaggatgttgtggagggtgtcgacgttgcccagc 6151



 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 428  gaggaggcgccagccgaccaccttg 452
            ||||||||||||||| |||||||||
Sbjct: 6001 gaggaggcgccagccaaccaccttg 6025
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>gb|AC097627.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone
              OSJNBb0079B22, from chromosome 3, complete sequence
          Length = 125217

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 55/59 (93%)
 Strand = Plus / Minus

                                                                         
Query: 332    gttgatcctggcgacgagctcgtcgccgcaggcctggtcccggaccttccagacgcact 390
              ||||||||||||||||||||||| ||||||||| | ||||| |||||||||||||||||
Sbjct: 119301 gttgatcctggcgacgagctcgtggccgcaggcttcgtccctgaccttccagacgcact 119243



 Score = 73.8 bits (37), Expect = 6e-10
 Identities = 52/57 (91%)
 Strand = Plus / Minus

                                                                       
Query: 522    gagagcacggagagcgtggggatgaggatgcggtgcagcgtgtccacgttgcccagc 578
              ||||||||||||||||||||||||||||||  ||| || ||||| ||||||||||||
Sbjct: 119123 gagagcacggagagcgtggggatgaggatgttgtggagggtgtcgacgttgcccagc 119067



 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 428    gaggaggcgccagccgaccaccttg 452
              ||||||||||||||| |||||||||
Sbjct: 119217 gaggaggcgccagccaaccaccttg 119193
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3,
            complete sequence
          Length = 36192742

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 55/59 (93%)
 Strand = Plus / Plus

                                                                       
Query: 332  gttgatcctggcgacgagctcgtcgccgcaggcctggtcccggaccttccagacgcact 390
            ||||||||||||||||||||||| ||||||||| | ||||| |||||||||||||||||
Sbjct: 5917 gttgatcctggcgacgagctcgtggccgcaggcttcgtccctgaccttccagacgcact 5975



 Score = 73.8 bits (37), Expect = 6e-10
 Identities = 52/57 (91%)
 Strand = Plus / Plus

                                                                     
Query: 522  gagagcacggagagcgtggggatgaggatgcggtgcagcgtgtccacgttgcccagc 578
            ||||||||||||||||||||||||||||||  ||| || ||||| ||||||||||||
Sbjct: 6095 gagagcacggagagcgtggggatgaggatgttgtggagggtgtcgacgttgcccagc 6151



 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 428  gaggaggcgccagccgaccaccttg 452
            ||||||||||||||| |||||||||
Sbjct: 6001 gaggaggcgccagccaaccaccttg 6025
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>dbj|AK104982.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-125-G06, full
           insert sequence
          Length = 879

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 55/59 (93%)
 Strand = Plus / Minus

                                                                      
Query: 332 gttgatcctggcgacgagctcgtcgccgcaggcctggtcccggaccttccagacgcact 390
           ||||||||||||||||||||||| ||||||||| | ||||| |||||||||||||||||
Sbjct: 488 gttgatcctggcgacgagctcgtggccgcaggcttcgtccctgaccttccagacgcact 430



 Score = 73.8 bits (37), Expect = 6e-10
 Identities = 52/57 (91%)
 Strand = Plus / Minus

                                                                    
Query: 522 gagagcacggagagcgtggggatgaggatgcggtgcagcgtgtccacgttgcccagc 578
           ||||||||||||||||||||||||||||||  ||| || ||||| ||||||||||||
Sbjct: 310 gagagcacggagagcgtggggatgaggatgttgtggagggtgtcgacgttgcccagc 254



 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 428 gaggaggcgccagccgaccaccttg 452
           ||||||||||||||| |||||||||
Sbjct: 404 gaggaggcgccagccaaccaccttg 380
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>dbj|AK072547.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023131F13, full
           insert sequence
          Length = 883

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 55/59 (93%)
 Strand = Plus / Minus

                                                                      
Query: 332 gttgatcctggcgacgagctcgtcgccgcaggcctggtcccggaccttccagacgcact 390
           ||||||||||||||||||||||| ||||||||| | ||||| |||||||||||||||||
Sbjct: 492 gttgatcctggcgacgagctcgtggccgcaggcttcgtccctgaccttccagacgcact 434



 Score = 73.8 bits (37), Expect = 6e-10
 Identities = 52/57 (91%)
 Strand = Plus / Minus

                                                                    
Query: 522 gagagcacggagagcgtggggatgaggatgcggtgcagcgtgtccacgttgcccagc 578
           ||||||||||||||||||||||||||||||  ||| || ||||| ||||||||||||
Sbjct: 314 gagagcacggagagcgtggggatgaggatgttgtggagggtgtcgacgttgcccagc 258



 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 428 gaggaggcgccagccgaccaccttg 452
           ||||||||||||||| |||||||||
Sbjct: 408 gaggaggcgccagccaaccaccttg 384
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>gb|AE005674.1| Shigella flexneri 2a str. 301, complete genome
          Length = 4607203

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 194    ctggtcgatcctggcggcgatg 215
              ||||||||||||||||||||||
Sbjct: 968954 ctggtcgatcctggcggcgatg 968975
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>ref|XM_464477.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 186

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 311 gccggcgccgtcgagggccttg 332
           ||||||||||||||||||||||
Sbjct: 168 gccggcgccgtcgagggccttg 147
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>gb|AC004963.2| Homo sapiens PAC clone RP5-1102A12 from 7, complete sequence
          Length = 173627

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 1     tttgatttgatttgatggcata 22
             ||||||||||||||||||||||
Sbjct: 55652 tttgatttgatttgatggcata 55631
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>gb|AE014075.1| Escherichia coli CFT073, complete genome
          Length = 5231428

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 194     ctggtcgatcctggcggcgatg 215
               ||||||||||||||||||||||
Sbjct: 1034691 ctggtcgatcctggcggcgatg 1034712
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>gb|CP000243.1| Escherichia coli UTI89, complete genome
          Length = 5065741

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 194    ctggtcgatcctggcggcgatg 215
              ||||||||||||||||||||||
Sbjct: 988236 ctggtcgatcctggcggcgatg 988257
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>gb|U00096.2| Escherichia coli K-12 MG1655, complete genome
          Length = 4639675

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 194    ctggtcgatcctggcggcgatg 215
              ||||||||||||||||||||||
Sbjct: 982954 ctggtcgatcctggcggcgatg 982975
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>dbj|AP009048.1| Escherichia coli W3110 DNA, complete genome
          Length = 4646332

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 194    ctggtcgatcctggcggcgatg 215
              ||||||||||||||||||||||
Sbjct: 984153 ctggtcgatcctggcggcgatg 984174
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 311     gccggcgccgtcgagggccttg 332
               ||||||||||||||||||||||
Sbjct: 5464052 gccggcgccgtcgagggccttg 5464073



 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 310      ggccggcgccgtcgagggcct 330
                |||||||||||||||||||||
Sbjct: 30289792 ggccggcgccgtcgagggcct 30289812
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>gb|AE014073.1| Shigella flexneri 2a str. 2457T, complete genome
          Length = 4599354

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 194    ctggtcgatcctggcggcgatg 215
              ||||||||||||||||||||||
Sbjct: 972923 ctggtcgatcctggcggcgatg 972944
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>dbj|AP004191.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1524_D08
          Length = 143046

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 311    gccggcgccgtcgagggccttg 332
              ||||||||||||||||||||||
Sbjct: 117633 gccggcgccgtcgagggccttg 117654
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>dbj|AP004812.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
            clone:P0026H03
          Length = 151827

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 311  gccggcgccgtcgagggccttg 332
            ||||||||||||||||||||||
Sbjct: 8787 gccggcgccgtcgagggccttg 8808
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>gb|AE005174.2| Escherichia coli O157:H7 EDL933, complete genome
          Length = 5528445

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 194     ctggtcgatcctggcggcgatg 215
               ||||||||||||||||||||||
Sbjct: 1202596 ctggtcgatcctggcggcgatg 1202617
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>emb|CT033245.1| Platynereis dumerilii EST IB0AAA24BC05EM1
          Length = 916

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 453 aagagcagcctgcgggcgtcct 474
           ||||||||||||||||||||||
Sbjct: 900 aagagcagcctgcgggcgtcct 879
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>dbj|BA000007.2| Escherichia coli O157:H7 DNA, complete genome
          Length = 5498450

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 194     ctggtcgatcctggcggcgatg 215
               ||||||||||||||||||||||
Sbjct: 1113373 ctggtcgatcctggcggcgatg 1113394
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>gb|CP000034.1| Shigella dysenteriae Sd197, complete genome
          Length = 4369232

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 194     ctggtcgatcctggcggcgatg 215
               ||||||||||||||||||||||
Sbjct: 2118759 ctggtcgatcctggcggcgatg 2118738
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>gb|CP000036.1| Shigella boydii Sb227, complete genome
          Length = 4519823

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 194     ctggtcgatcctggcggcgatg 215
               ||||||||||||||||||||||
Sbjct: 2201901 ctggtcgatcctggcggcgatg 2201922
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>gb|CP000038.1| Shigella sonnei Ss046, complete genome
          Length = 4825265

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 194     ctggtcgatcctggcggcgatg 215
               ||||||||||||||||||||||
Sbjct: 1000876 ctggtcgatcctggcggcgatg 1000897
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>gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome
          Length = 4109442

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 212     gatgatgaagtcgttggcgctcagc 236
               |||||||||||||||| ||||||||
Sbjct: 2384393 gatgatgaagtcgttgacgctcagc 2384369
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>ref|XM_508680.1| PREDICTED: Pan troglodytes similar to hypothetical protein FLJ23514
           (LOC451465), mRNA
          Length = 2179

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 74  ttccatttccatgaaacaaaa 94
           |||||||||||||||||||||
Sbjct: 408 ttccatttccatgaaacaaaa 428
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>ref|XM_467581.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3450

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 310  ggccggcgccgtcgagggcct 330
            |||||||||||||||||||||
Sbjct: 2850 ggccggcgccgtcgagggcct 2870
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>ref|XM_506951.1| PREDICTED Oryza sativa (japonica cultivar-group), B1121A12.27 mRNA
          Length = 4024

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 310  ggccggcgccgtcgagggcct 330
            |||||||||||||||||||||
Sbjct: 3481 ggccggcgccgtcgagggcct 3501
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>ref|XM_467582.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1748

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 310 ggccggcgccgtcgagggcct 330
           |||||||||||||||||||||
Sbjct: 386 ggccggcgccgtcgagggcct 366
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>gb|AC148650.1| Pan troglodytes chromosome X clone PTB-044F10 map human ortholog q28,
             complete sequence
          Length = 153826

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 309   tggccggcgccgtcgagggcc 329
             |||||||||||||||||||||
Sbjct: 67298 tggccggcgccgtcgagggcc 67278
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>emb|AL354861.11| Human DNA sequence from clone RP11-180I4 on chromosome 9 Contains an
             alpha type 7 proteasome subunit (PSMA7) pseudogene, the 3'
             end of a novel gene, a novel gene and a CpG island,
             complete sequence
          Length = 182653

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 458   cagcctgcgggcgtcctcctc 478
             |||||||||||||||||||||
Sbjct: 99812 cagcctgcgggcgtcctcctc 99832
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>gb|U52112.2| Homo sapiens chromosome X clone QLL-D9139, Qc-7G12, Qc-7C1, Qc-12B2,
             Qc-12D5, QLL-A074, Qc-9D3 map q28, complete sequence
          Length = 181343

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 309   tggccggcgccgtcgagggcc 329
             |||||||||||||||||||||
Sbjct: 39528 tggccggcgccgtcgagggcc 39508
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>gb|AC159035.2| Pan troglodytes BAC clone CH251-297P8 from chromosome unknown, complete
             sequence
          Length = 207834

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 309   tggccggcgccgtcgagggcc 329
             |||||||||||||||||||||
Sbjct: 37171 tggccggcgccgtcgagggcc 37151
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>gb|AC103562.6| Homo sapiens BAC clone RP11-608O21 from 4, complete sequence
          Length = 147301

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 71    ccattccatttccatgaaaca 91
             |||||||||||||||||||||
Sbjct: 54005 ccattccatttccatgaaaca 53985
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 341     ggcgacgagctcgtcgccgcaggcc 365
               |||||||||||||||||||| ||||
Sbjct: 8763104 ggcgacgagctcgtcgccgctggcc 8763128
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>gb|AC161384.4| Gallus gallus BAC clone CH261-69B2 from chromosome ul, complete sequence
          Length = 186366

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 293    gagcgcggcgggggcgtggcc 313
              |||||||||||||||||||||
Sbjct: 127171 gagcgcggcgggggcgtggcc 127191
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>dbj|AP005382.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OJ1001_B06
          Length = 134810

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 341   ggcgacgagctcgtcgccgcaggcc 365
             |||||||||||||||||||| ||||
Sbjct: 33425 ggcgacgagctcgtcgccgctggcc 33449
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>dbj|AP005284.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:B1121A12
          Length = 138796

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 310   ggccggcgccgtcgagggcct 330
             |||||||||||||||||||||
Sbjct: 90709 ggccggcgccgtcgagggcct 90729
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>dbj|AK120552.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013130C13, full
            insert sequence
          Length = 3449

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 310  ggccggcgccgtcgagggcct 330
            |||||||||||||||||||||
Sbjct: 2849 ggccggcgccgtcgagggcct 2869
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>dbj|AK105959.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-205-D11, full
           insert sequence
          Length = 908

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 341 ggcgacgagctcgtcgccgcaggcc 365
           |||||||||||||||||||| ||||
Sbjct: 312 ggcgacgagctcgtcgccgctggcc 288
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>dbj|AK099532.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013031L04, full
           insert sequence
          Length = 854

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 341 ggcgacgagctcgtcgccgcaggcc 365
           |||||||||||||||||||| ||||
Sbjct: 317 ggcgacgagctcgtcgccgctggcc 293
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>dbj|AK068514.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013152E08, full
           insert sequence
          Length = 1748

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 310 ggccggcgccgtcgagggcct 330
           |||||||||||||||||||||
Sbjct: 386 ggccggcgccgtcgagggcct 366
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>dbj|AK066637.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013071I08, full
           insert sequence
          Length = 767

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 341 ggcgacgagctcgtcgccgcaggcc 365
           |||||||||||||||||||| ||||
Sbjct: 313 ggcgacgagctcgtcgccgctggcc 289
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>dbj|AK065834.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013036J09, full
            insert sequence
          Length = 4024

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 310  ggccggcgccgtcgagggcct 330
            |||||||||||||||||||||
Sbjct: 3481 ggccggcgccgtcgagggcct 3501
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>dbj|AK062565.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-045-F09, full
            insert sequence
          Length = 2083

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 310  ggccggcgccgtcgagggcct 330
            |||||||||||||||||||||
Sbjct: 1608 ggccggcgccgtcgagggcct 1628
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>dbj|AK060455.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-012-A05, full
           insert sequence
          Length = 901

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 341 ggcgacgagctcgtcgccgcaggcc 365
           |||||||||||||||||||| ||||
Sbjct: 319 ggcgacgagctcgtcgccgctggcc 295
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>dbj|AK060172.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-311-G05, full
           insert sequence
          Length = 947

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 310 ggccggcgccgtcgagggcct 330
           |||||||||||||||||||||
Sbjct: 393 ggccggcgccgtcgagggcct 413
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>dbj|AP001148.4| Homo sapiens genomic DNA, chromosome 11q clone:RP11-762L8, complete
              sequences
          Length = 169340

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 74     ttccatttccatgaaacaaaa 94
              |||||||||||||||||||||
Sbjct: 101504 ttccatttccatgaaacaaaa 101524
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>gb|AC110553.10| Mus musculus chromosome 3, clone RP23-248D8, complete sequence
          Length = 206620

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 252    gtgtagagctgggccctgac 271
              ||||||||||||||||||||
Sbjct: 160376 gtgtagagctgggccctgac 160395
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>gb|CP000148.1| Geobacter metallireducens GS-15, complete genome
          Length = 3997420

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 307     cgtggccggcgccgtcgagg 326
               ||||||||||||||||||||
Sbjct: 2803493 cgtggccggcgccgtcgagg 2803512
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>gb|AC102334.10| Mus musculus chromosome 15, clone RP24-544N15, complete sequence
          Length = 162721

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 110   tgcaaaggaagaggaacaag 129
             ||||||||||||||||||||
Sbjct: 30567 tgcaaaggaagaggaacaag 30586
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>gb|AC144640.3| Carollia perspicillata clone 14D2, complete sequence
          Length = 116172

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 86     gaaacaaaactgtccctgtatgca 109
              ||||||||||||||||||| ||||
Sbjct: 102202 gaaacaaaactgtccctgtttgca 102225
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>gb|AC122832.4| Mus musculus BAC clone RP23-179D3 from 12, complete sequence
          Length = 224056

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 100   cctgtatgcatgcaaaggaa 119
             ||||||||||||||||||||
Sbjct: 60850 cctgtatgcatgcaaaggaa 60869
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>gb|AC026231.4| Mus musculus strain C57BL6/J chromosome 5 clone RP23-114F4, complete
             sequence
          Length = 208199

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 102   tgtatgcatgcaaaggaaga 121
             ||||||||||||||||||||
Sbjct: 28161 tgtatgcatgcaaaggaaga 28142
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>emb|AL939127.1|SCO939127 Streptomyces coelicolor A3(2) complete genome; segment 24/29
          Length = 290850

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 541   ggatgaggatgcggtgcagcgtgt 564
             ||||||||||||||||||| ||||
Sbjct: 91631 ggatgaggatgcggtgcagggtgt 91608
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>emb|AL596182.28| Mouse DNA sequence from clone RP23-303F24 on chromosome 11 Contains a
             pseudogene similar to part of glyceraldehyde-3-phosphate
             dehydrogenase (Gapd), the Irf1 gene for interferon
             regulatory factor 1, a novel gene, the Slc22a5 gene for
             solute carrier family 22 (organic cation transporter)
             member 5, a ribosomal protein L27a (Rpl27a) pseudogene, a
             cyclin-dependent kinase 4 (Cdk4) pseudogene and two CpG
             islands, complete sequence
          Length = 191494

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 295   gcgcggcgggggcgtggccg 314
             ||||||||||||||||||||
Sbjct: 37899 gcgcggcgggggcgtggccg 37918
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>gb|AC084701.5| Homo sapiens chromosome 18, clone RP11-1005F9, complete sequence
          Length = 140712

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 77    catttccatgaaacaaaactgtcc 100
             |||||||| |||||||||||||||
Sbjct: 75333 catttccaagaaacaaaactgtcc 75356
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>dbj|AK140826.1| Mus musculus 16 days embryo head cDNA, RIKEN full-length enriched
            library, clone:C130036H05 product:hypothetical protein,
            full insert sequence
          Length = 3134

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 252  gtgtagagctgggccctgac 271
            ||||||||||||||||||||
Sbjct: 1899 gtgtagagctgggccctgac 1880
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>dbj|AK140028.1| Mus musculus adult male corpora quadrigemina cDNA, RIKEN
           full-length enriched library, clone:B230104B15
           product:hypothetical protein, full insert sequence
          Length = 1920

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 102 tgtatgcatgcaaaggaaga 121
           ||||||||||||||||||||
Sbjct: 819 tgtatgcatgcaaaggaaga 800
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>gb|AC013660.9| Homo sapiens, clone RP11-20A14, complete sequence
          Length = 164324

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 77    catttccatgaaacaaaactgtcc 100
             |||||||| |||||||||||||||
Sbjct: 20038 catttccaagaaacaaaactgtcc 20015
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>ref|XM_625936.1| Cryptosporidium parvum Iowa II hypothetical protein (cgd4_3600),
           partial mRNA
          Length = 2979

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 73  attccatttccatgaaacaaaact 96
           ||||||||||||||||| ||||||
Sbjct: 710 attccatttccatgaaagaaaact 687
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>gb|AE016817.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome IV,
              complete sequence
          Length = 1466886

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 381    cagacgcactcgagcttgag 400
              ||||||||||||||||||||
Sbjct: 935625 cagacgcactcgagcttgag 935606
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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                           
Query: 298     cggcgggggcgtggccggcgccgtcgag 325
               ||||| ||||||||||||||||| ||||
Sbjct: 7126536 cggcgcgggcgtggccggcgccgccgag 7126563
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>dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete genome
          Length = 1849742

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 415     ccttggtggggaagaggagg 434
               ||||||||||||||||||||
Sbjct: 1194954 ccttggtggggaagaggagg 1194935
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>ref|NM_209577.1| Eremothecium gossypii ADR128Cp (ADR128C), mRNA
          Length = 2604

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 381  cagacgcactcgagcttgag 400
            ||||||||||||||||||||
Sbjct: 1424 cagacgcactcgagcttgag 1443
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>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome
          Length = 3551823

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 484   gcggcgccgggtgggcgtcg 503
             ||||||||||||||||||||
Sbjct: 50929 gcggcgccgggtgggcgtcg 50910
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>gb|AE017221.1| Thermus thermophilus HB27, complete genome
          Length = 1894877

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 415    ccttggtggggaagaggagg 434
              ||||||||||||||||||||
Sbjct: 869864 ccttggtggggaagaggagg 869845
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>emb|CT032401.1| Platynereis dumerilii EST IB0AAA38DF05EM1
          Length = 894

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 453 aagagcagcctgcgggcgtc 472
           ||||||||||||||||||||
Sbjct: 889 aagagcagcctgcgggcgtc 870
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>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome
          Length = 3566135

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 301     cgggggcgtggccggcgccg 320
               ||||||||||||||||||||
Sbjct: 1298791 cgggggcgtggccggcgccg 1298772
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>gb|AC157811.3| Mus musculus chromosome 1, clone RP24-377C24, complete sequence
          Length = 188752

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                              
Query: 295    gcgcggcgggggcgtggccggcgccgtcgagg 326
              |||||||||||||| |||||||| || |||||
Sbjct: 157167 gcgcggcgggggcgaggccggcggcggcgagg 157198
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>gb|DP000018.1| Carollia perspicillata target 1 genomic scaffold
          Length = 1501503

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 86     gaaacaaaactgtccctgtatgca 109
              ||||||||||||||||||| ||||
Sbjct: 918618 gaaacaaaactgtccctgtttgca 918641
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>emb|AL928801.6| Mouse DNA sequence from clone RP23-116P4 on chromosome 2, complete
              sequence
          Length = 132674

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 65     tggcttccattccatttccatgaa 88
              |||||||||||||||||| |||||
Sbjct: 123325 tggcttccattccatttctatgaa 123302
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>gb|AC102564.7| Mus musculus chromosome 1, clone RP23-210C12, complete sequence
          Length = 230474

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                              
Query: 295    gcgcggcgggggcgtggccggcgccgtcgagg 326
              |||||||||||||| |||||||| || |||||
Sbjct: 177906 gcgcggcgggggcgaggccggcggcggcgagg 177875
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>gb|M21066.1|MUSIRF1A Mouse interferon regulatory factor 1 gene, 5' flank
          Length = 524

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 295 gcgcggcgggggcgtggccg 314
           ||||||||||||||||||||
Sbjct: 223 gcgcggcgggggcgtggccg 242


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,804,057
Number of Sequences: 3902068
Number of extensions: 4804057
Number of successful extensions: 107334
Number of sequences better than 10.0: 72
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 106124
Number of HSP's gapped (non-prelim): 1210
length of query: 579
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 556
effective length of database: 17,143,297,704
effective search space: 9531673523424
effective search space used: 9531673523424
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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