| Clone Name | rbaal33f09 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK121800.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033096P07, full insert sequence Length = 1341 Score = 351 bits (177), Expect = 2e-93 Identities = 318/365 (87%) Strand = Plus / Minus Query: 232 gctgagaattcaaacaacatggtgtgcttatacttcgcaccaggctgcaccaccacagac 291 |||||||| ||||||| ||| ||||||||||||||| ||||||||||||||||||| || Sbjct: 1097 gctgagaactcaaacagcatagtgtgcttatacttctcaccaggctgcaccaccacggag 1038 Query: 292 gggaaattggtctggttgatggcattggggaacccctgggtttccaagcatactcctgca 351 |||||||||| |||||||||||||| || |||||||||||||||||||||||||| | | Sbjct: 1037 gggaaattgggttggttgatggcattaggaaacccctgggtttccaagcatactccggaa 978 Query: 352 tgcttcccgtaaacagctccgcctttgcccgtgatgccattcacatagttggcggtatag 411 |||||||| ||||| || || |||||||| || | ||||| ||||||||| || || ||| Sbjct: 977 tgcttcccataaacggcaccacctttgccagttacgccatccacatagttagcagtgtag 918 Query: 412 aactgcatgccaggcgcatcggtccagaggtccagagtccgtgagctcgacgagtccttt 471 |||||||| ||||| ||||| |||||||||||||| ||||||||| |||| || || || Sbjct: 917 aactgcattccaggtgcatcagtccagaggtccagggtccgtgagttcgatgaatctttc 858 Query: 472 agctttgctgcgtgcttcaggccattcttctcatcacccgagtccaacacatagttatga 531 ||||| || || |||||||||||||||||||| || || ||||||| |||||||||||| Sbjct: 857 agcttggcagcatgcttcaggccattcttctcttcgccagagtccagcacatagttatgg 798 Query: 532 tcgtatcctccaggaacatcgttgatgcgatctccaatcctgtgctccgtggtgaaatcg 591 || ||||||||||| |||||||||||||| |||||||||||||||| || ||||| ||| Sbjct: 797 tcatatcctccaggcacatcgttgatgcgggctccaatcctgtgctctgttgtgaagtcg 738 Query: 592 aaagg 596 ||||| Sbjct: 737 aaagg 733
>ref|NM_194929.1| Oryza sativa (japonica cultivar-group) putative aldose 1-epimerase - like protein (OSJNAa0034B05.14), mRNA Length = 1032 Score = 343 bits (173), Expect = 4e-91 Identities = 317/365 (86%) Strand = Plus / Minus Query: 232 gctgagaattcaaacaacatggtgtgcttatacttcgcaccaggctgcaccaccacagac 291 |||||||| ||||||| ||| ||||||||||||||| ||||||||||||||||||| || Sbjct: 1028 gctgagaactcaaacagcatagtgtgcttatacttctcaccaggctgcaccaccacggag 969 Query: 292 gggaaattggtctggttgatggcattggggaacccctgggtttccaagcatactcctgca 351 |||||||||| |||||||||||||| || |||||||||||||||||||||||||| | | Sbjct: 968 gggaaattgggttggttgatggcattaggaaacccctgggtttccaagcatactccggaa 909 Query: 352 tgcttcccgtaaacagctccgcctttgcccgtgatgccattcacatagttggcggtatag 411 |||||||| ||||| || || |||||||| || | ||||| ||||||||| || || ||| Sbjct: 908 tgcttcccataaacggcaccacctttgccagttacgccatccacatagttagcagtgtag 849 Query: 412 aactgcatgccaggcgcatcggtccagaggtccagagtccgtgagctcgacgagtccttt 471 |||||||| ||||| ||||| |||||||||||||| ||||||||| |||| || || || Sbjct: 848 aactgcattccaggtgcatcagtccagaggtccagggtccgtgagttcgatgaatctttc 789 Query: 472 agctttgctgcgtgcttcaggccattcttctcatcacccgagtccaacacatagttatga 531 ||||| || || |||||||||||||||||||| || || ||||||| |||||||||||| Sbjct: 788 agcttggcagcatgcttcaggccattcttctcttcgccagagtccagcacatagttatgg 729 Query: 532 tcgtatcctccaggaacatcgttgatgcgatctccaatcctgtgctccgtggtgaaatcg 591 || ||||||||||| |||||||||||||| |||||||| ||||||| || ||||| ||| Sbjct: 728 tcatatcctccaggcacatcgttgatgcgggctccaatcttgtgctctgttgtgaagtcg 669 Query: 592 aaagg 596 ||||| Sbjct: 668 aaagg 664
>gb|AC091724.3| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNBa0004E08, complete sequence Length = 158294 Score = 343 bits (173), Expect = 4e-91 Identities = 317/365 (86%) Strand = Plus / Plus Query: 232 gctgagaattcaaacaacatggtgtgcttatacttcgcaccaggctgcaccaccacagac 291 |||||||| ||||||| ||| ||||||||||||||| ||||||||||||||||||| || Sbjct: 45979 gctgagaactcaaacagcatagtgtgcttatacttctcaccaggctgcaccaccacggag 46038 Query: 292 gggaaattggtctggttgatggcattggggaacccctgggtttccaagcatactcctgca 351 |||||||||| |||||||||||||| || |||||||||||||||||||||||||| | | Sbjct: 46039 gggaaattgggttggttgatggcattaggaaacccctgggtttccaagcatactccggaa 46098 Query: 352 tgcttcccgtaaacagctccgcctttgcccgtgatgccattcacatagttggcggtatag 411 |||||||| ||||| || || |||||||| || | ||||| ||||||||| || || ||| Sbjct: 46099 tgcttcccataaacggcaccacctttgccagttacgccatccacatagttagcagtgtag 46158 Query: 412 aactgcatgccaggcgcatcggtccagaggtccagagtccgtgagctcgacgagtccttt 471 |||||||| ||||| ||||| |||||||||||||| ||||||||| |||| || || || Sbjct: 46159 aactgcattccaggtgcatcagtccagaggtccagggtccgtgagttcgatgaatctttc 46218 Query: 472 agctttgctgcgtgcttcaggccattcttctcatcacccgagtccaacacatagttatga 531 ||||| || || |||||||||||||||||||| || || ||||||| |||||||||||| Sbjct: 46219 agcttggcagcatgcttcaggccattcttctcttcgccagagtccagcacatagttatgg 46278 Query: 532 tcgtatcctccaggaacatcgttgatgcgatctccaatcctgtgctccgtggtgaaatcg 591 || ||||||||||| |||||||||||||| |||||||| ||||||| || ||||| ||| Sbjct: 46279 tcatatcctccaggcacatcgttgatgcgggctccaatcttgtgctctgttgtgaagtcg 46338 Query: 592 aaagg 596 ||||| Sbjct: 46339 aaagg 46343
>gb|AC122145.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNAa0034B05, complete sequence Length = 125655 Score = 343 bits (173), Expect = 4e-91 Identities = 317/365 (86%) Strand = Plus / Plus Query: 232 gctgagaattcaaacaacatggtgtgcttatacttcgcaccaggctgcaccaccacagac 291 |||||||| ||||||| ||| ||||||||||||||| ||||||||||||||||||| || Sbjct: 111634 gctgagaactcaaacagcatagtgtgcttatacttctcaccaggctgcaccaccacggag 111693 Query: 292 gggaaattggtctggttgatggcattggggaacccctgggtttccaagcatactcctgca 351 |||||||||| |||||||||||||| || |||||||||||||||||||||||||| | | Sbjct: 111694 gggaaattgggttggttgatggcattaggaaacccctgggtttccaagcatactccggaa 111753 Query: 352 tgcttcccgtaaacagctccgcctttgcccgtgatgccattcacatagttggcggtatag 411 |||||||| ||||| || || |||||||| || | ||||| ||||||||| || || ||| Sbjct: 111754 tgcttcccataaacggcaccacctttgccagttacgccatccacatagttagcagtgtag 111813 Query: 412 aactgcatgccaggcgcatcggtccagaggtccagagtccgtgagctcgacgagtccttt 471 |||||||| ||||| ||||| |||||||||||||| ||||||||| |||| || || || Sbjct: 111814 aactgcattccaggtgcatcagtccagaggtccagggtccgtgagttcgatgaatctttc 111873 Query: 472 agctttgctgcgtgcttcaggccattcttctcatcacccgagtccaacacatagttatga 531 ||||| || || |||||||||||||||||||| || || ||||||| |||||||||||| Sbjct: 111874 agcttggcagcatgcttcaggccattcttctcttcgccagagtccagcacatagttatgg 111933 Query: 532 tcgtatcctccaggaacatcgttgatgcgatctccaatcctgtgctccgtggtgaaatcg 591 || ||||||||||| |||||||||||||| |||||||| ||||||| || ||||| ||| Sbjct: 111934 tcatatcctccaggcacatcgttgatgcgggctccaatcttgtgctctgttgtgaagtcg 111993 Query: 592 aaagg 596 ||||| Sbjct: 111994 aaagg 111998
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 343 bits (173), Expect = 4e-91 Identities = 317/365 (86%) Strand = Plus / Plus Query: 232 gctgagaattcaaacaacatggtgtgcttatacttcgcaccaggctgcaccaccacagac 291 |||||||| ||||||| ||| ||||||||||||||| ||||||||||||||||||| || Sbjct: 3454850 gctgagaactcaaacagcatagtgtgcttatacttctcaccaggctgcaccaccacggag 3454909 Query: 292 gggaaattggtctggttgatggcattggggaacccctgggtttccaagcatactcctgca 351 |||||||||| |||||||||||||| || |||||||||||||||||||||||||| | | Sbjct: 3454910 gggaaattgggttggttgatggcattaggaaacccctgggtttccaagcatactccggaa 3454969 Query: 352 tgcttcccgtaaacagctccgcctttgcccgtgatgccattcacatagttggcggtatag 411 |||||||| ||||| || || |||||||| || | ||||| ||||||||| || || ||| Sbjct: 3454970 tgcttcccataaacggcaccacctttgccagttacgccatccacatagttagcagtgtag 3455029 Query: 412 aactgcatgccaggcgcatcggtccagaggtccagagtccgtgagctcgacgagtccttt 471 |||||||| ||||| ||||| |||||||||||||| ||||||||| |||| || || || Sbjct: 3455030 aactgcattccaggtgcatcagtccagaggtccagggtccgtgagttcgatgaatctttc 3455089 Query: 472 agctttgctgcgtgcttcaggccattcttctcatcacccgagtccaacacatagttatga 531 ||||| || || |||||||||||||||||||| || || ||||||| |||||||||||| Sbjct: 3455090 agcttggcagcatgcttcaggccattcttctcttcgccagagtccagcacatagttatgg 3455149 Query: 532 tcgtatcctccaggaacatcgttgatgcgatctccaatcctgtgctccgtggtgaaatcg 591 || ||||||||||| |||||||||||||| |||||||| ||||||| || ||||| ||| Sbjct: 3455150 tcatatcctccaggcacatcgttgatgcgggctccaatcttgtgctctgttgtgaagtcg 3455209 Query: 592 aaagg 596 ||||| Sbjct: 3455210 aaagg 3455214
>dbj|AK061152.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-208-F01, full insert sequence Length = 1857 Score = 343 bits (173), Expect = 4e-91 Identities = 317/365 (86%) Strand = Plus / Minus Query: 232 gctgagaattcaaacaacatggtgtgcttatacttcgcaccaggctgcaccaccacagac 291 |||||||| ||||||| ||| ||||||||||||||| ||||||||||||||||||| || Sbjct: 1604 gctgagaactcaaacagcatagtgtgcttatacttctcaccaggctgcaccaccacggag 1545 Query: 292 gggaaattggtctggttgatggcattggggaacccctgggtttccaagcatactcctgca 351 |||||||||| |||||||||||||| || |||||||||||||||||||||||||| | | Sbjct: 1544 gggaaattgggttggttgatggcattaggaaacccctgggtttccaagcatactccggaa 1485 Query: 352 tgcttcccgtaaacagctccgcctttgcccgtgatgccattcacatagttggcggtatag 411 |||||||| ||||| || || |||||||| || | ||||| ||||||||| || || ||| Sbjct: 1484 tgcttcccataaacggcaccacctttgccagttacgccatccacatagttagcagtgtag 1425 Query: 412 aactgcatgccaggcgcatcggtccagaggtccagagtccgtgagctcgacgagtccttt 471 |||||||| ||||| ||||| |||||||||||||| ||||||||| |||| || || || Sbjct: 1424 aactgcattccaggtgcatcagtccagaggtccagggtccgtgagttcgatgaatctttc 1365 Query: 472 agctttgctgcgtgcttcaggccattcttctcatcacccgagtccaacacatagttatga 531 ||||| || || |||||||||||||||||||| || || ||||||| |||||||||||| Sbjct: 1364 agcttggcagcatgcttcaggccattcttctcttcgccagagtccagcacatagttatgg 1305 Query: 532 tcgtatcctccaggaacatcgttgatgcgatctccaatcctgtgctccgtggtgaaatcg 591 || ||||||||||| |||||||||||||| |||||||| ||||||| || ||||| ||| Sbjct: 1304 tcatatcctccaggcacatcgttgatgcgggctccaatcttgtgctctgttgtgaagtcg 1245 Query: 592 aaagg 596 ||||| Sbjct: 1244 aaagg 1240
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 343 bits (173), Expect = 4e-91 Identities = 317/365 (86%) Strand = Plus / Plus Query: 232 gctgagaattcaaacaacatggtgtgcttatacttcgcaccaggctgcaccaccacagac 291 |||||||| ||||||| ||| ||||||||||||||| ||||||||||||||||||| || Sbjct: 3454771 gctgagaactcaaacagcatagtgtgcttatacttctcaccaggctgcaccaccacggag 3454830 Query: 292 gggaaattggtctggttgatggcattggggaacccctgggtttccaagcatactcctgca 351 |||||||||| |||||||||||||| || |||||||||||||||||||||||||| | | Sbjct: 3454831 gggaaattgggttggttgatggcattaggaaacccctgggtttccaagcatactccggaa 3454890 Query: 352 tgcttcccgtaaacagctccgcctttgcccgtgatgccattcacatagttggcggtatag 411 |||||||| ||||| || || |||||||| || | ||||| ||||||||| || || ||| Sbjct: 3454891 tgcttcccataaacggcaccacctttgccagttacgccatccacatagttagcagtgtag 3454950 Query: 412 aactgcatgccaggcgcatcggtccagaggtccagagtccgtgagctcgacgagtccttt 471 |||||||| ||||| ||||| |||||||||||||| ||||||||| |||| || || || Sbjct: 3454951 aactgcattccaggtgcatcagtccagaggtccagggtccgtgagttcgatgaatctttc 3455010 Query: 472 agctttgctgcgtgcttcaggccattcttctcatcacccgagtccaacacatagttatga 531 ||||| || || |||||||||||||||||||| || || ||||||| |||||||||||| Sbjct: 3455011 agcttggcagcatgcttcaggccattcttctcttcgccagagtccagcacatagttatgg 3455070 Query: 532 tcgtatcctccaggaacatcgttgatgcgatctccaatcctgtgctccgtggtgaaatcg 591 || ||||||||||| |||||||||||||| |||||||| ||||||| || ||||| ||| Sbjct: 3455071 tcatatcctccaggcacatcgttgatgcgggctccaatcttgtgctctgttgtgaagtcg 3455130 Query: 592 aaagg 596 ||||| Sbjct: 3455131 aaagg 3455135
>gb|AY110655.1| Zea mays CL9117_1 mRNA sequence Length = 1124 Score = 170 bits (86), Expect = 3e-39 Identities = 293/362 (80%) Strand = Plus / Plus Query: 235 gagaattcaaacaacatggtgtgcttatacttcgcaccaggctgcaccaccacagacggg 294 ||||| ||||||| ||| || |||||||||||| |||| ||| | || |||||||| || Sbjct: 135 gagaactcaaacagcatagtatgcttatacttctcaccgggccgaacaaccacagaggga 194 Query: 295 aaattggtctggttgatggcattggggaacccctgggtttccaagcatactcctgcatgc 354 || | | ||||||||||||||| |||||||||||||||| |||||| ||||| |||||| Sbjct: 195 aactcaggctggttgatggcattcgggaacccctgggttttcaagcacactccagcatgc 254 Query: 355 ttcccgtaaacagctccgcctttgcccgtgatgccattcacatagttggcggtatagaac 414 ||| |||| ||||| || | ||||| |||||||| ||| |||||||| || || | | Sbjct: 255 ttcgcgtagacagcgcccgccttgccaccgatgccatccacgtagttggcagtgtacagc 314 Query: 415 tgcatgccaggcgcatcggtccagaggtccagagtccgtgagctcgacgagtcctttagc 474 |||||||| || || || ||||| |||||||| ||||| ||||||||| || || ||| Sbjct: 315 tgcatgccgggtgcgtcagtccacaggtccagggtccgcaagctcgacggatctttcagc 374 Query: 475 tttgctgcgtgcttcaggccattcttctcatcacccgagtccaacacatagttatgatcg 534 | || || |||||||||| | |||||| || || |||||| ||| ||||||||||| Sbjct: 375 ctggccgcacgcttcaggccgtccttctcgtcgccacagtccagcacgtagttatgatca 434 Query: 535 tatcctccaggaacatcgttgatgcgatctccaatcctgtgctccgtggtgaaatcgaaa 594 || |||||||||||| ||| |||||| || ||||||||| ||||||| ||||| || ||| Sbjct: 435 taccctccaggaacaccgtcgatgcgctcgccaatcctgcgctccgtcgtgaagtcaaaa 494 Query: 595 gg 596 || Sbjct: 495 gg 496
>ref|NM_112675.3| Arabidopsis thaliana aldose 1-epimerase AT3G17940 mRNA, complete cds Length = 1288 Score = 60.0 bits (30), Expect = 9e-06 Identities = 108/134 (80%) Strand = Plus / Minus Query: 232 gctgagaattcaaacaacatggtgtgcttatacttcgcaccaggctgcaccaccacagac 291 ||||| || ||||||| ||| ||||| || |||||| |||||| || ||||| |||||| Sbjct: 1096 gctgaaaactcaaacagcatcgtgtgattgtacttctcaccagccttaaccacaacagac 1037 Query: 292 gggaaattggtctggttgatggcattggggaacccctgggtttccaagcatactcctgca 351 |||||||| | |||||| || || || ||||| ||||| || || | ||| || || ||| Sbjct: 1036 gggaaattcgactggttaatcgcgttcgggaatccctgcgtctcaaggcacacacccgca 977 Query: 352 tgcttcccgtaaac 365 || ||||||||||| Sbjct: 976 tgtttcccgtaaac 963 Score = 48.1 bits (24), Expect = 0.033 Identities = 27/28 (96%) Strand = Plus / Minus Query: 512 agtccaacacatagttatgatcgtatcc 539 |||||||||| ||||||||||||||||| Sbjct: 813 agtccaacacgtagttatgatcgtatcc 786 Score = 44.1 bits (22), Expect = 0.52 Identities = 43/50 (86%) Strand = Plus / Minus Query: 388 ccattcacatagttggcggtatagaactgcatgccaggcgcatcggtcca 437 |||||||||||||| ||||||| |||||||| || ||| ||| |||||| Sbjct: 940 ccattcacatagttcccggtataaaactgcattcccggcacattggtcca 891
>gb|AY039932.1| Arabidopsis thaliana putative aldose 1-epimerase (At3g17940) mRNA, complete cds Length = 1166 Score = 60.0 bits (30), Expect = 9e-06 Identities = 108/134 (80%) Strand = Plus / Minus Query: 232 gctgagaattcaaacaacatggtgtgcttatacttcgcaccaggctgcaccaccacagac 291 ||||| || ||||||| ||| ||||| || |||||| |||||| || ||||| |||||| Sbjct: 1013 gctgaaaactcaaacagcatcgtgtgattgtacttctcaccagccttaaccacaacagac 954 Query: 292 gggaaattggtctggttgatggcattggggaacccctgggtttccaagcatactcctgca 351 |||||||| | |||||| || || || ||||| ||||| || || | ||| || || ||| Sbjct: 953 gggaaattcgactggttaatcgcgttcgggaatccctgcgtctcaaggcacacacccgca 894 Query: 352 tgcttcccgtaaac 365 || ||||||||||| Sbjct: 893 tgtttcccgtaaac 880 Score = 48.1 bits (24), Expect = 0.033 Identities = 27/28 (96%) Strand = Plus / Minus Query: 512 agtccaacacatagttatgatcgtatcc 539 |||||||||| ||||||||||||||||| Sbjct: 730 agtccaacacgtagttatgatcgtatcc 703 Score = 44.1 bits (22), Expect = 0.52 Identities = 43/50 (86%) Strand = Plus / Minus Query: 388 ccattcacatagttggcggtatagaactgcatgccaggcgcatcggtcca 437 |||||||||||||| ||||||| |||||||| || ||| ||| |||||| Sbjct: 857 ccattcacatagttcccggtataaaactgcattcccggcacattggtcca 808
>emb|BX824889.1|CNS0A6X7 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH80ZB03 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1180 Score = 60.0 bits (30), Expect = 9e-06 Identities = 108/134 (80%) Strand = Plus / Minus Query: 232 gctgagaattcaaacaacatggtgtgcttatacttcgcaccaggctgcaccaccacagac 291 ||||| || ||||||| ||| ||||| || |||||| |||||| || ||||| |||||| Sbjct: 988 gctgaaaactcaaacagcatcgtgtgattgtacttctcaccagccttaaccacaacagac 929 Query: 292 gggaaattggtctggttgatggcattggggaacccctgggtttccaagcatactcctgca 351 |||||||| | |||||| || || || ||||| ||||| || || | ||| || || ||| Sbjct: 928 gggaaattcgactggttaatcgcgttcgggaatccctgcgtctcaaggcacacacccgca 869 Query: 352 tgcttcccgtaaac 365 || ||||||||||| Sbjct: 868 tgtttcccgtaaac 855 Score = 48.1 bits (24), Expect = 0.033 Identities = 27/28 (96%) Strand = Plus / Minus Query: 512 agtccaacacatagttatgatcgtatcc 539 |||||||||| ||||||||||||||||| Sbjct: 705 agtccaacacgtagttatgatcgtatcc 678 Score = 44.1 bits (22), Expect = 0.52 Identities = 43/50 (86%) Strand = Plus / Minus Query: 388 ccattcacatagttggcggtatagaactgcatgccaggcgcatcggtcca 437 |||||||||||||| ||||||| |||||||| || ||| ||| |||||| Sbjct: 832 ccattcacatagttcccggtataaaactgcattcccggcacattggtcca 783
>emb|BX822398.1|CNS0A708 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB34ZA02 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1214 Score = 60.0 bits (30), Expect = 9e-06 Identities = 108/134 (80%) Strand = Plus / Minus Query: 232 gctgagaattcaaacaacatggtgtgcttatacttcgcaccaggctgcaccaccacagac 291 ||||| || ||||||| ||| ||||| || |||||| |||||| || ||||| |||||| Sbjct: 1089 gctgaaaaatcaaacagcatcgtgtgattgtacttctcaccagccttaaccacaacagac 1030 Query: 292 gggaaattggtctggttgatggcattggggaacccctgggtttccaagcatactcctgca 351 |||||||| | |||||| || || || ||||| ||||| || || | ||| || || ||| Sbjct: 1029 gggaaattagactggttaatcgcgttcgggaatccctgcgtctcaaggcacacacccgca 970 Query: 352 tgcttcccgtaaac 365 || ||||||||||| Sbjct: 969 tgtttcccgtaaac 956 Score = 48.1 bits (24), Expect = 0.033 Identities = 27/28 (96%) Strand = Plus / Minus Query: 512 agtccaacacatagttatgatcgtatcc 539 |||||||||| ||||||||||||||||| Sbjct: 805 agtccaacacgtagttatgatcgtatcc 778
>dbj|AB019230.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MEB5 Length = 74968 Score = 60.0 bits (30), Expect = 9e-06 Identities = 108/134 (80%) Strand = Plus / Plus Query: 232 gctgagaattcaaacaacatggtgtgcttatacttcgcaccaggctgcaccaccacagac 291 ||||| || ||||||| ||| ||||| || |||||| |||||| || ||||| |||||| Sbjct: 54265 gctgaaaactcaaacagcatcgtgtgattgtacttctcaccagccttaaccacaacagac 54324 Query: 292 gggaaattggtctggttgatggcattggggaacccctgggtttccaagcatactcctgca 351 |||||||| | |||||| || || || ||||| ||||| || || | ||| || || ||| Sbjct: 54325 gggaaattcgactggttaatcgcgttcgggaatccctgcgtctcaaggcacacacccgca 54384 Query: 352 tgcttcccgtaaac 365 || ||||||||||| Sbjct: 54385 tgtttcccgtaaac 54398 Score = 48.1 bits (24), Expect = 0.033 Identities = 27/28 (96%) Strand = Plus / Plus Query: 512 agtccaacacatagttatgatcgtatcc 539 |||||||||| ||||||||||||||||| Sbjct: 54548 agtccaacacgtagttatgatcgtatcc 54575 Score = 44.1 bits (22), Expect = 0.52 Identities = 43/50 (86%) Strand = Plus / Plus Query: 388 ccattcacatagttggcggtatagaactgcatgccaggcgcatcggtcca 437 |||||||||||||| ||||||| |||||||| || ||| ||| |||||| Sbjct: 54421 ccattcacatagttcccggtataaaactgcattcccggcacattggtcca 54470
>gb|BT001908.1| Arabidopsis thaliana clone C105464 putative aldose 1-epimerase (At3g17940) mRNA, complete cds Length = 1002 Score = 60.0 bits (30), Expect = 9e-06 Identities = 108/134 (80%) Strand = Plus / Minus Query: 232 gctgagaattcaaacaacatggtgtgcttatacttcgcaccaggctgcaccaccacagac 291 ||||| || ||||||| ||| ||||| || |||||| |||||| || ||||| |||||| Sbjct: 968 gctgaaaactcaaacagcatcgtgtgattgtacttctcaccagccttaaccacaacagac 909 Query: 292 gggaaattggtctggttgatggcattggggaacccctgggtttccaagcatactcctgca 351 |||||||| | |||||| || || || ||||| ||||| || || | ||| || || ||| Sbjct: 908 gggaaattcgactggttaatcgcgttcgggaatccctgcgtctcaaggcacacacccgca 849 Query: 352 tgcttcccgtaaac 365 || ||||||||||| Sbjct: 848 tgtttcccgtaaac 835 Score = 48.1 bits (24), Expect = 0.033 Identities = 27/28 (96%) Strand = Plus / Minus Query: 512 agtccaacacatagttatgatcgtatcc 539 |||||||||| ||||||||||||||||| Sbjct: 685 agtccaacacgtagttatgatcgtatcc 658 Score = 44.1 bits (22), Expect = 0.52 Identities = 43/50 (86%) Strand = Plus / Minus Query: 388 ccattcacatagttggcggtatagaactgcatgccaggcgcatcggtcca 437 |||||||||||||| ||||||| |||||||| || ||| ||| |||||| Sbjct: 812 ccattcacatagttcccggtataaaactgcattcccggcacattggtcca 763
>gb|DQ200393.1| Solanum tuberosum clone 069B08 unknown mRNA Length = 1218 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 351 atgcttcccgtaaacagctcc 371 ||||||||||||||||||||| Sbjct: 1009 atgcttcccgtaaacagctcc 989
>gb|AE009134.1| Agrobacterium tumefaciens str. C58 circular chromosome, section 160 of 256 of the complete sequence Length = 13735 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 484 tgcttcaggccattcttctca 504 ||||||||||||||||||||| Sbjct: 10947 tgcttcaggccattcttctca 10927
>ref|NM_006836.1| Homo sapiens GCN1 general control of amino-acid synthesis 1-like 1 (yeast) (GCN1L1), mRNA Length = 8699 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 487 ttcaggccattcttctcatca 507 ||||||||||||||||||||| Sbjct: 3387 ttcaggccattcttctcatca 3367
>ref|XM_534701.2| PREDICTED: Canis familiaris similar to GCN1 general control of amino-acid synthesis 1-like 1, transcript variant 1 (LOC477505), mRNA Length = 8666 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 487 ttcaggccattcttctcatca 507 ||||||||||||||||||||| Sbjct: 3381 ttcaggccattcttctcatca 3361
>emb|AL031737.2|HS8B22 Human DNA sequence from clone RP1-8B22 on chromosome 1p35.1-36.21 Contains a dynein, cytoplasmic light chain 1 (DNCL1) pseudogene, complete sequence Length = 133760 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 487 ttcaggccattcttctcatca 507 ||||||||||||||||||||| Sbjct: 106239 ttcaggccattcttctcatca 106219
>dbj|D86973.2| Homo sapiens mRNA for KIAA0219 gene, partial cds Length = 8608 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 487 ttcaggccattcttctcatca 507 ||||||||||||||||||||| Sbjct: 3387 ttcaggccattcttctcatca 3367
>gb|AE007869.1| Agrobacterium tumefaciens str. C58, complete genome Length = 2841581 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 484 tgcttcaggccattcttctca 504 ||||||||||||||||||||| Sbjct: 1777117 tgcttcaggccattcttctca 1777097
>dbj|AK090187.1| Mus musculus 15 days embryo brain cDNA, RIKEN full-length enriched library, clone:G630014H21 product:unclassifiable, full insert sequence Length = 2014 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 150 actcctttcttctggtcgttt 170 ||||||||||||||||||||| Sbjct: 1180 actcctttcttctggtcgttt 1200
>gb|AC004812.1|AC004812 Homo sapiens PAC clone 267D11 from 12, complete sequence Length = 138532 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 487 ttcaggccattcttctcatca 507 ||||||||||||||||||||| Sbjct: 101710 ttcaggccattcttctcatca 101730
>gb|U77700.1|HSU77700 Homo sapiens HsGCN1 mRNA, partial cds Length = 6085 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 487 ttcaggccattcttctcatca 507 ||||||||||||||||||||| Sbjct: 852 ttcaggccattcttctcatca 832
>ref|XM_633911.1| Dictyostelium discoideum hypothetical protein (DDB0185553), partial mRNA Length = 2850 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 178 ttctacaactactgcagttgcagc 201 ||||||||||| |||||||||||| Sbjct: 1038 ttctacaactagtgcagttgcagc 1061
>ref|XM_865251.1| PREDICTED: Bos taurus similar to Synaptobrevin-like protein 1 (LOC613984), mRNA Length = 613 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 75 attttctgaatgagataaag 94 |||||||||||||||||||| Sbjct: 318 attttctgaatgagataaag 337
>ref|XM_616264.2| PREDICTED: Bos taurus similar to GCN1 general control of amino-acid synthesis 1-like 1 (LOC536143), mRNA Length = 8448 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 487 ttcaggccattcttctcatc 506 |||||||||||||||||||| Sbjct: 3608 ttcaggccattcttctcatc 3589
>gb|BC056141.1| Homo sapiens synaptobrevin-like 1, mRNA (cDNA clone MGC:64832 IMAGE:6503665), complete cds Length = 2673 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 75 attttctgaatgagataaag 94 |||||||||||||||||||| Sbjct: 408 attttctgaatgagataaag 427
>ref|NM_005638.3| Homo sapiens synaptobrevin-like 1 (SYBL1), mRNA Length = 2588 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 75 attttctgaatgagataaag 94 |||||||||||||||||||| Sbjct: 344 attttctgaatgagataaag 363
>ref|XM_751098.1| Ustilago maydis 521 hypothetical protein (UM00044.1) partial mRNA Length = 1521 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 269 caccaggctgcaccaccacagacg 292 |||||||||| ||||||||||||| Sbjct: 49 caccaggctggaccaccacagacg 26
>emb|AJ004799.1|HSSYBL1 Homo sapiens SYBL1 gene Length = 39287 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 75 attttctgaatgagataaag 94 |||||||||||||||||||| Sbjct: 28013 attttctgaatgagataaag 28032
>gb|AY594294.1| Nicotiana benthamiana truncated actin 1 mRNA, partial cds Length = 876 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 503 catcacccgagtccaacaca 522 |||||||||||||||||||| Sbjct: 243 catcacccgagtccaacaca 224
>emb|AL451074.13| Human DNA sequence from clone RP11-466F5 on chromosome 1 Contains the 3' end of the MGST3 gene for microsomal glutathione S-transferase 3, the ALDH9A1 gene for aldehyde dehydrogenase 9 family (member A1), a ribosomal protein S13 (RPS13) pseudogene, a ribosomal protein L21 (RPL21) pseudogene, two novel genes (FLJ42974), a carbonic anhydrase XIV (CA14) pseudogene, the gene for putative membrane protein (LOC54499), a ribosomal protein L26 (RPL26) pseudogene, the 5' end of (tbc), the 5' end of the UMPK gene for uridine monophosphate kinase and two CpG islands, complete sequence Length = 188217 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 486 cttcaggccattcttctcat 505 |||||||||||||||||||| Sbjct: 125978 cttcaggccattcttctcat 125997
>gb|AC116318.7| Mus musculus BAC clone RP23-80L14 from chromosome 1, complete sequence Length = 235490 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 340 catactcctgcatgcttccc 359 |||||||||||||||||||| Sbjct: 184656 catactcctgcatgcttccc 184675
>gb|CP000284.1| Methylobacillus flagellatus KT, complete genome Length = 2971517 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 297 attggtctggttgatggcat 316 |||||||||||||||||||| Sbjct: 695636 attggtctggttgatggcat 695655
>emb|AL080313.13|HSDJ448I9 Human DNA sequence from clone RP3-448I9 on chromosome 6 Contains two novel genes, complete sequence Length = 94371 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 147 ttgactcctttcttctggtc 166 |||||||||||||||||||| Sbjct: 77151 ttgactcctttcttctggtc 77132
>emb|X92396.1|HSNOV H.sapiens mRNA for novel gene in Xq28 region Length = 2588 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 75 attttctgaatgagataaag 94 |||||||||||||||||||| Sbjct: 344 attttctgaatgagataaag 363
>emb|BX571658.1| Wolinella succinogenes, complete genome; segment 2/7 Length = 346792 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 373 cctttgcccgtgatgccattcaca 396 ||||||||||||||| |||||||| Sbjct: 67842 cctttgcccgtgatggcattcaca 67819
>emb|AJ549301.2|HSA549301 Homo sapiens mRNA for tetanus insensitive VAMP (Ti-VAMP) (SYBL1 gene), splice form c Length = 696 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 75 attttctgaatgagataaag 94 |||||||||||||||||||| Sbjct: 197 attttctgaatgagataaag 216
>emb|AJ287207.1|TPI287207 Thamnostylum piriforme partial act-1 gene for actin Length = 876 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 503 catcacccgagtccaacaca 522 |||||||||||||||||||| Sbjct: 211 catcacccgagtccaacaca 192
>emb|AJ271736.1|HSA271736 Homo sapiens Xq pseudoautosomal region; segment 2/2 Length = 158661 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 75 attttctgaatgagataaag 94 |||||||||||||||||||| Sbjct: 25902 attttctgaatgagataaag 25921
>emb|CR857267.1| Pongo pygmaeus mRNA; cDNA DKFZp469C1522 (from clone DKFZp469C1522) Length = 2621 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 75 attttctgaatgagataaag 94 |||||||||||||||||||| Sbjct: 363 attttctgaatgagataaag 382
>emb|CR609740.1| full-length cDNA clone CS0DC017YH01 of Neuroblastoma Cot 25-normalized of Homo sapiens (human) Length = 1794 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 75 attttctgaatgagataaag 94 |||||||||||||||||||| Sbjct: 351 attttctgaatgagataaag 370
>emb|CR604175.1| full-length cDNA clone CS0DL010YI21 of B cells (Ramos cell line) Cot 25-normalized of Homo sapiens (human) Length = 1627 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 75 attttctgaatgagataaag 94 |||||||||||||||||||| Sbjct: 244 attttctgaatgagataaag 263
>gb|AC022558.9| Homo sapiens chromosome 15, clone RP11-90B9, complete sequence Length = 186403 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 73 ttattttctgaatgagataa 92 |||||||||||||||||||| Sbjct: 35446 ttattttctgaatgagataa 35465
>gb|AE009951.2| Fusobacterium nucleatum subsp. nucleatum ATCC 25586, complete genome Length = 2174500 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 182 acaactactgcagttgcagc 201 |||||||||||||||||||| Sbjct: 555518 acaactactgcagttgcagc 555537
>gb|AC092493.1|AC092493 Drosophila melanogaster, chromosome X, region 15C-15D, BAC clone BACR10J22, complete sequence Length = 157457 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 74 tattttctgaatgagataaa 93 |||||||||||||||||||| Sbjct: 154425 tattttctgaatgagataaa 154444
>gb|AC022347.2|AC022347 Drosophila melanogaster, chromosome X, region 15F-15F, BAC clone BACR35G15, complete sequence Length = 168615 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 74 tattttctgaatgagataaa 93 |||||||||||||||||||| Sbjct: 33801 tattttctgaatgagataaa 33782
>gb|AC153556.5| Mus musculus 10 BAC RP23-395M5 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 184751 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 66 ttgaacattattttctgaat 85 |||||||||||||||||||| Sbjct: 59625 ttgaacattattttctgaat 59644
>gb|AY880865.1| Hylobates lar SYBL1 gene, partial cds Length = 2434 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 75 attttctgaatgagataaag 94 |||||||||||||||||||| Sbjct: 15 attttctgaatgagataaag 34
>gb|AY880864.1| Pan troglodytes SYBL1 gene, partial cds Length = 2464 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 75 attttctgaatgagataaag 94 |||||||||||||||||||| Sbjct: 16 attttctgaatgagataaag 35
>gb|AY880863.1| Gorilla gorilla SYBL1 gene, partial cds Length = 2449 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 75 attttctgaatgagataaag 94 |||||||||||||||||||| Sbjct: 17 attttctgaatgagataaag 36
>dbj|AK222794.1| Homo sapiens mRNA for synaptobrevin-like 1 variant, clone: HEP01266 Length = 1178 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 75 attttctgaatgagataaag 94 |||||||||||||||||||| Sbjct: 309 attttctgaatgagataaag 328
>emb|AL928622.9| Zebrafish DNA sequence from clone DKEY-31O13, complete sequence Length = 230557 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 165 tcgttttattccattctaca 184 |||||||||||||||||||| Sbjct: 48525 tcgttttattccattctaca 48544
>dbj|AP000415.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MIG10 Length = 31712 Score = 40.1 bits (20), Expect = 8.1 Identities = 26/28 (92%) Strand = Plus / Minus Query: 57 aagccacctttgaacattattttctgaa 84 ||||||||||| |||||| ||||||||| Sbjct: 13317 aagccaccttttaacattcttttctgaa 13290
>emb|AJ295938.1|HSA295938 Homo sapiens mRNA for synaptobrevin like protein 1B (SYBL1B gene) Length = 2492 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 75 attttctgaatgagataaag 94 |||||||||||||||||||| Sbjct: 320 attttctgaatgagataaag 339
>gb|AC108832.10| Mus musculus chromosome 7, clone RP23-242J3, complete sequence Length = 185083 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 68 gaacattattttctgaatga 87 |||||||||||||||||||| Sbjct: 84937 gaacattattttctgaatga 84918
>gb|AE003505.3| Drosophila melanogaster chromosome X, section 57 of 74 of the complete sequence Length = 314205 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 74 tattttctgaatgagataaa 93 |||||||||||||||||||| Sbjct: 200193 tattttctgaatgagataaa 200174
>emb|X95806.1|HSSYBL14 H.sapiens SYBL1 gene, exon 4 Length = 292 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 75 attttctgaatgagataaag 94 |||||||||||||||||||| Sbjct: 121 attttctgaatgagataaag 140
>gb|AC131797.3| Mus musculus BAC clone RP24-496C20 from 1, complete sequence Length = 139995 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 340 catactcctgcatgcttccc 359 |||||||||||||||||||| Sbjct: 6331 catactcctgcatgcttccc 6350 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,711,643 Number of Sequences: 3902068 Number of extensions: 4711643 Number of successful extensions: 98574 Number of sequences better than 10.0: 60 Number of HSP's better than 10.0 without gapping: 60 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 98389 Number of HSP's gapped (non-prelim): 183 length of query: 598 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 575 effective length of database: 17,143,297,704 effective search space: 9857396179800 effective search space used: 9857396179800 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)