ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbaal33f08 |
|---|---|
| Clone Library Name | barley_pub |
>RS3A_XENTR (Q642T2) 40S ribosomal protein S3a| Length = 263 Score = 33.1 bits (74), Expect = 0.80 Identities = 15/35 (42%), Positives = 22/35 (62%) Frame = -3 Query: 496 KRVRVTASLSFVLGRVMPSKRQGREAGTPAGDETG 392 ++V++ F LG++M +G AG PAGDETG Sbjct: 212 RKVKMLKKPKFELGKLMELHGEGGGAGKPAGDETG 246
>FRIZ2_DROME (Q9VVX3) Protein frizzled-2 precursor (dFz2)| Length = 694 Score = 32.7 bits (73), Expect = 1.0 Identities = 22/68 (32%), Positives = 30/68 (44%) Frame = -2 Query: 572 EAASCNGINKRGSSAMGSGKPPRAAEAGAGYGQSEFCFGTSDAKQAPRARGGNTSRRRNG 393 EA S G S GSG + + G+G G S G+S + RG N+ +N Sbjct: 185 EAGSGGSSGGSGGSGSGSGSGGKRKQGGSGSGGSG-AGGSSGSTSTKPCRGRNSKNCQNP 243 Query: 392 QKQKLSSK 369 Q +K S K Sbjct: 244 QGEKASGK 251
>ZN335_HUMAN (Q9H4Z2) Zinc finger protein 335| Length = 1342 Score = 32.0 bits (71), Expect = 1.8 Identities = 21/76 (27%), Positives = 31/76 (40%), Gaps = 1/76 (1%) Frame = -2 Query: 557 NGINKRGSSAMGSGKPPRAAEAGAGYGQSE-FCFGTSDAKQAPRARGGNTSRRRNGQKQK 381 N + +A G G+P +E+G G G SE +SDA AP + S + Sbjct: 4 NEVESSSDAAPGPGRPEEPSESGLGVGTSEAVSADSSDAAAAPGQAEADDSGVGQSSDRG 63 Query: 380 LSSKHDVSSEDEMLSP 333 S+ +VS P Sbjct: 64 SRSQEEVSESSSSADP 79
>GAG_FOAMV (P14349) Gag polyprotein (Core polyprotein) [Contains: Protease (EC| 3.4.23.-)] Length = 811 Score = 32.0 bits (71), Expect = 1.8 Identities = 21/69 (30%), Positives = 29/69 (42%) Frame = -2 Query: 554 GINKRGSSAMGSGKPPRAAEAGAGYGQSEFCFGTSDAKQAPRARGGNTSRRRNGQKQKLS 375 G+N RG S S P G G GQ+ TS Q P G R +GQ + S Sbjct: 468 GLNARGQSIRASVTPQPRPSRGRGRGQN-----TSRPSQGPANSGRGRQRPASGQSNRGS 522 Query: 374 SKHDVSSED 348 S + + ++ Sbjct: 523 STQNQNQDN 531
>VLPB_MYCHR (P29229) Variant surface antigen B precursor (VLPB prolipoprotein)| Length = 174 Score = 32.0 bits (71), Expect = 1.8 Identities = 20/69 (28%), Positives = 25/69 (36%) Frame = -2 Query: 569 AASCNGINKRGSSAMGSGKPPRAAEAGAGYGQSEFCFGTSDAKQAPRARGGNTSRRRNGQ 390 A SC N S GSG ++G G G G S R+ G++S GQ Sbjct: 27 AISCGQTNTDKSQQPGSGSSTSGGQSGTGLGSGTTTGGQSGTTTGGRSGSGSSSSTTGGQ 86 Query: 389 KQKLSSKHD 363 S D Sbjct: 87 TGTGSDSQD 95
>ALG10_EMENI (Q5B0M8) Alpha-1,2 glucosyltransferase alg10 (EC 2.4.1.-)| (Alpha-2-glucosyltransferase alg10) (Dolichyl-phosphoglucose-dependent glucosyltransferase alg10) (Asparagine-linked glycosylation protein 10) Length = 608 Score = 32.0 bits (71), Expect = 1.8 Identities = 20/67 (29%), Positives = 31/67 (46%) Frame = +1 Query: 133 SHTLGSLTNLLRGAYIAFDEASPLVTASGAGALSAAVRYRVTIDMVRT*GDKGPDGCIEG 312 S+ + +L LLRG+ D + T + A A+ +R + +D VR + P G Sbjct: 74 SYAVCALILLLRGSPEHLDPPALRATNAAAAAVLLPLRLQTALDTVRKQRNTRPSGAWLS 133 Query: 313 HTTLGCC 333 HT L C Sbjct: 134 HTVLNIC 140
>LRC41_HUMAN (Q15345) Leucine-rich repeat-containing protein 41 (Protein Muf1)| Length = 843 Score = 31.6 bits (70), Expect = 2.3 Identities = 35/116 (30%), Positives = 49/116 (42%), Gaps = 3/116 (2%) Frame = -2 Query: 539 GSSAMGSGKPPR-AAEAGAGYGQSEFCFGTSDAKQAPRARGGNTSRRRNGQKQKLSSKHD 363 GS +GS +P R AAE A + S+AKQ PRA RR+ Q+ + D Sbjct: 258 GSLLLGSRRPRRDAAERCAAALMASR--RKSEAKQMPRAAPATRVTRRSTQESLTAGGTD 315 Query: 362 VSSEDEMLSPQQPRVV*PSMQ--PSGPLSPYVLTMSMVTRYRTAADRAPAPEAVTR 201 + E L P P + PS P + + S + R A AP P+ + R Sbjct: 316 LKRE---LHPPATSHEAPGTKRSPSAPAATSSASSSTSSYKRAPASSAPQPKPLKR 368
>RS3A_XENLA (Q801S3) 40S ribosomal protein S3a| Length = 263 Score = 31.6 bits (70), Expect = 2.3 Identities = 14/35 (40%), Positives = 21/35 (60%) Frame = -3 Query: 496 KRVRVTASLSFVLGRVMPSKRQGREAGTPAGDETG 392 ++V++ F LG++M +G G PAGDETG Sbjct: 212 RKVKMLKKPKFELGKLMELHGEGGGTGKPAGDETG 246
>GLPK_MYCLE (Q9CB81) Glycerol kinase (EC 2.7.1.30) (ATP:glycerol| 3-phosphotransferase) (Glycerokinase) (GK) Length = 508 Score = 31.2 bits (69), Expect = 3.0 Identities = 24/83 (28%), Positives = 36/83 (43%), Gaps = 6/83 (7%) Frame = -2 Query: 491 GAGYGQSEFCFGTSDAKQAPRARGG-----NTSRRRNGQKQKLSSKHDVSSEDEMLSPQQ 327 GA E FGT D GG + + N + L + +DE+LS Sbjct: 154 GAAAENGEALFGTPDTWLLWNLTGGPRGGVHVTDVTNASRTMLMDLEKLDWDDELLSFFS 213 Query: 326 -PRVV*PSMQPSGPLSPYVLTMS 261 PR + P++ S PL PY +T++ Sbjct: 214 IPRAMLPAIASSSPLQPYGVTLA 236
>RS3A_OPHHA (Q98TX2) 40S ribosomal protein S3a| Length = 263 Score = 30.8 bits (68), Expect = 4.0 Identities = 13/35 (37%), Positives = 22/35 (62%) Frame = -3 Query: 496 KRVRVTASLSFVLGRVMPSKRQGREAGTPAGDETG 392 ++V++ F LG++M +G +G P+GDETG Sbjct: 212 RKVKMLKKPKFELGKLMELHGEGGGSGKPSGDETG 246
>AMPH_HUMAN (P49418) Amphiphysin| Length = 695 Score = 30.8 bits (68), Expect = 4.0 Identities = 27/113 (23%), Positives = 40/113 (35%), Gaps = 8/113 (7%) Frame = -2 Query: 494 AGAGYGQSEFCFGTSDAKQAPRARGGNTSRRRNGQKQKL--------SSKHDVSSEDEML 339 AG G E GT + A A+ ++K+ +S H+ E+E+ Sbjct: 501 AGEGVSLEEAKIGTETTEGAESAQPEAEELEATVPQEKVIPSVVIEPASNHEEEGENEIT 560 Query: 338 SPQQPRVV*PSMQPSGPLSPYVLTMSMVTRYRTAADRAPAPEAVTRGDASSKA 180 +P+ P GP S T + T + D P P A G A A Sbjct: 561 IGAEPKETTEDAAPPGPTSE---TPELATEQKPIQDPQPTPSAPAMGAADQLA 610
>SPN90_MOUSE (Q9ESJ4) SH3 adapter protein SPIN90 (NCK-interacting protein with| SH3 domain) (SH3 protein interacting with Nck, 90 kDa) (VacA-interacting protein, 54 kDa) (VIP54) (N-WASP-interacting protein, 90kDa) (Wiskott-Aldrich syndrome protein-binding Length = 714 Score = 30.8 bits (68), Expect = 4.0 Identities = 19/73 (26%), Positives = 32/73 (43%) Frame = -2 Query: 422 GGNTSRRRNGQKQKLSSKHDVSSEDEMLSPQQPRVV*PSMQPSGPLSPYVLTMSMVTRYR 243 GG T+ G S +S D + + P + PS P+ P P + V++ + Sbjct: 193 GGRTAIPSGGSSVSSGSSASSTSMDTLYTGSSPSELGPSCSPTPPPVPRRGAHTTVSQPQ 252 Query: 242 TAADRAPAPEAVT 204 + +AP+PE T Sbjct: 253 PSPSKAPSPEPPT 265
>AMER1_HUMAN (Q9Y4X0) AMME syndrome candidate gene 1 protein| Length = 333 Score = 30.0 bits (66), Expect = 6.7 Identities = 17/55 (30%), Positives = 23/55 (41%) Frame = -2 Query: 569 AASCNGINKRGSSAMGSGKPPRAAEAGAGYGQSEFCFGTSDAKQAPRARGGNTSR 405 AA C G+ K+ S+ PP + G G S C G S + GG +R Sbjct: 2 AAGCCGVKKQKLSS----SPPSGSGGGGGASSSSHCSGESQCRAGELGLGGAGTR 52
>HORN_MOUSE (Q8VHD8) Hornerin| Length = 2496 Score = 30.0 bits (66), Expect = 6.7 Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 4/88 (4%) Frame = -2 Query: 581 TEAEAASCNGINKRGSSAMGSGKPPRAAEAGAGYGQSEFCFGTSDAKQAPRAR--GGNTS 408 ++ + C + G + GSG + + G+ Y QS +GT ++ +P +R GG+ S Sbjct: 831 SQQHGSCCGQSSGYGQNEYGSGHSASSGQQGSHYSQSS-SYGTHNSGGSPSSRPAGGHGS 889 Query: 407 R--RRNGQKQKLSSKHDVSSEDEMLSPQ 330 R R +G Q S SS S Q Sbjct: 890 RSGRSSGLGQYGSPSGQTSSSTRQGSGQ 917
>AMER1_MOUSE (Q9JHT5) AMME syndrome candidate gene 1 protein homolog| Length = 344 Score = 30.0 bits (66), Expect = 6.7 Identities = 17/55 (30%), Positives = 23/55 (41%) Frame = -2 Query: 569 AASCNGINKRGSSAMGSGKPPRAAEAGAGYGQSEFCFGTSDAKQAPRARGGNTSR 405 AA C G+ K+ S+ PP + G G S C G S + GG +R Sbjct: 2 AAGCCGVKKQKLSS----SPPSGSGGGGGASSSSHCSGESQCRAGELGLGGAGTR 52
>RS3A_EIMTE (O43999) 40S ribosomal protein S3a (EtS3a)| Length = 263 Score = 30.0 bits (66), Expect = 6.7 Identities = 13/35 (37%), Positives = 21/35 (60%) Frame = -3 Query: 496 KRVRVTASLSFVLGRVMPSKRQGREAGTPAGDETG 392 ++V++ F LG++M +G AG P+GDE G Sbjct: 212 RKVKMLKKPKFELGKLMELHGEGGGAGKPSGDEAG 246
>HORN_HUMAN (Q86YZ3) Hornerin| Length = 2850 Score = 30.0 bits (66), Expect = 6.7 Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 2/59 (3%) Frame = -2 Query: 542 RGSSAMGSGKPPRAAEAGAGYGQSEFC--FGTSDAKQAPRARGGNTSRRRNGQKQKLSS 372 RG GSG+ P + G+G GQS G+ + + R G+ S + +G K SS Sbjct: 880 RGRHGSGSGQSPGHGQRGSGSGQSPSYGRHGSGSGRSSSSGRHGSGSGQSSGFGHKSSS 938
>DVL3_MOUSE (Q61062) Segment polarity protein dishevelled homolog DVL-3| (Dishevelled-3) (DSH homolog 3) Length = 716 Score = 30.0 bits (66), Expect = 6.7 Identities = 29/108 (26%), Positives = 46/108 (42%) Frame = -2 Query: 575 AEAASCNGINKRGSSAMGSGKPPRAAEAGAGYGQSEFCFGTSDAKQAPRARGGNTSRRRN 396 +E + +G N+ GS K P+A ++ +G SE T + + PR R + R+ Sbjct: 570 SEGSRSSGSNRSGSDRRKE-KDPKAGDSKSGGSGSESDHTTRSSLRGPRERAPS---ERS 625 Query: 395 GQKQKLSSKHDVSSEDEMLSPQQPRVV*PSMQPSGPLSPYVLTMSMVT 252 G +S+H S + S + PS P G Y M M+T Sbjct: 626 G---PAASEHSHRSHHSLTSSLRSHHTHPSYGPPGVPPLYGPPMLMMT 670
>CTCF_HUMAN (P49711) Transcriptional repressor CTCF (CCCTC-binding factor)| (CTCFL paralog) (11-zinc finger protein) Length = 727 Score = 29.6 bits (65), Expect = 8.8 Identities = 12/30 (40%), Positives = 19/30 (63%) Frame = -2 Query: 422 GGNTSRRRNGQKQKLSSKHDVSSEDEMLSP 333 GG T + + G+K+K+ SK + SS+ E P Sbjct: 588 GGETKKSKRGRKRKMRSKKEDSSDSENAEP 617
>VE2_HPV04 (Q07849) Regulatory protein E2| Length = 402 Score = 29.6 bits (65), Expect = 8.8 Identities = 22/68 (32%), Positives = 29/68 (42%) Frame = -2 Query: 578 EAEAASCNGINKRGSSAMGSGKPPRAAEAGAGYGQSEFCFGTSDAKQAPRARGGNTSRRR 399 E E + G S GSG+ PR G G G E G++ +P G SR R Sbjct: 249 ETEGVRLRRRRREGKSGPGSGETPRKRRRGGGRGGGETELGSA---PSPAEVG---SRHR 302 Query: 398 NGQKQKLS 375 ++Q LS Sbjct: 303 QVERQGLS 310
>RS3A_MOUSE (P97351) 40S ribosomal protein S3a| Length = 263 Score = 29.6 bits (65), Expect = 8.8 Identities = 13/35 (37%), Positives = 21/35 (60%) Frame = -3 Query: 496 KRVRVTASLSFVLGRVMPSKRQGREAGTPAGDETG 392 ++V++ F LG++M +G +G AGDETG Sbjct: 212 RKVKMLKKPKFELGKLMELHGEGGSSGKAAGDETG 246
>VCX1_HUMAN (Q9H320) Variable charge X-linked protein 1 (VCX-B1 protein)| (Variably charged protein X-B1) (Variable charge protein on X with ten repeats) (VCX-10r) Length = 206 Score = 29.6 bits (65), Expect = 8.8 Identities = 26/85 (30%), Positives = 36/85 (42%), Gaps = 1/85 (1%) Frame = -2 Query: 521 SGKPPRAAEAGAGYGQSEFCFGTSDAKQAPRARGGNTSRR-RNGQKQKLSSKHDVSSEDE 345 SG P +A EAG S+ K A+ G RR R G+K + V++ + Sbjct: 8 SGPPAKATEAGKRKSSSQPSPSDPKKKTTKVAKKGKAVRRGRRGKKGAATKMAAVTAPEA 67 Query: 344 MLSPQQPRVV*PSMQPSGPLSPYVL 270 +P P PS QPS L + L Sbjct: 68 ESAPAAPG---PSDQPSQELPQHEL 89
>NOLC1_HUMAN (Q14978) Nucleolar phosphoprotein p130 (Nucleolar 130 kDa protein)| (140 kDa nucleolar phosphoprotein) (Nopp140) (Nucleolar and coiled-body phosphoprotein 1) Length = 699 Score = 29.6 bits (65), Expect = 8.8 Identities = 41/182 (22%), Positives = 63/182 (34%), Gaps = 25/182 (13%) Frame = -2 Query: 578 EAEAASCNGINKRGSSAMGSGKPPRAAEAGAGYGQSEFCFGTSDAK-------------- 441 E E S + + K+ G P + A A G +S + D+ Sbjct: 481 EEEKTSKSAVKKKPQKVAGGAAPSKPASAKKGKAESSNSSSSDDSSEEEEEKLKGKGSPR 540 Query: 440 -QAPRARGGNTSRRRNGQKQKLSSKHDVSSEDEMLSPQQPRVV*PSMQPSGPLSPYVLTM 264 QAP+A G + +NG+ K +SE+E ++ VV + SG L Sbjct: 541 PQAPKANGTSALTAQNGKAAK-------NSEEEEEEKKKAAVV---VSKSGSLKK----- 585 Query: 263 SMVTRYRTAADRAPAPEA----------VTRGDASSKAM*APLRRFVREPSV*DSSMLPH 114 + AA A P+A + K +P RR E DS + + Sbjct: 586 ---RKQNEAAKEAETPQAKKIKLQTPNTFPKRKKGEKRASSPFRRVREEEIEVDSRVADN 642 Query: 113 SF 108 SF Sbjct: 643 SF 644
>SYN2_MOUSE (Q64332) Synapsin-2 (Synapsin II)| Length = 586 Score = 29.6 bits (65), Expect = 8.8 Identities = 23/77 (29%), Positives = 32/77 (41%), Gaps = 7/77 (9%) Frame = -2 Query: 389 KQKLSSKHDVSSEDEMLSPQQP-------RVV*PSMQPSGPLSPYVLTMSMVTRYRTAAD 231 K+ SSK P QP +V+ P PSGP P + S + ++A Sbjct: 442 KEPDSSKTPPQRPPPQGGPGQPQGMQPPGKVLPPRRLPSGPSLPSSSSSSSSSSSSSSAP 501 Query: 230 RAPAPEAVTRGDASSKA 180 + P T GDASS + Sbjct: 502 QRPGGPTTTHGDASSSS 518
>CTCF_RAT (Q9R1D1) Transcriptional repressor CTCF (CCCTC-binding factor)| (CTCFL paralog) (11-zinc finger protein) Length = 737 Score = 29.6 bits (65), Expect = 8.8 Identities = 12/30 (40%), Positives = 19/30 (63%) Frame = -2 Query: 422 GGNTSRRRNGQKQKLSSKHDVSSEDEMLSP 333 GG T + + G+K+K+ SK + SS+ E P Sbjct: 588 GGETKKSKRGRKRKMRSKKEDSSDSENAEP 617
>RCC2_HUMAN (Q9P258) Protein RCC2 (Telophase disk protein of 60 kDa) (RCC1-like| protein TD-60) Length = 522 Score = 29.6 bits (65), Expect = 8.8 Identities = 20/55 (36%), Positives = 25/55 (45%) Frame = -2 Query: 509 PRAAEAGAGYGQSEFCFGTSDAKQAPRARGGNTSRRRNGQKQKLSSKHDVSSEDE 345 PR A A + E G A+ PR RGG R+R ++ SS SS DE Sbjct: 2 PRKKAAAAAW--EEPSSGNGTARAGPRKRGGPAGRKRERPERCSSSSGGGSSGDE 54 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 82,845,317 Number of Sequences: 219361 Number of extensions: 1559353 Number of successful extensions: 5011 Number of sequences better than 10.0: 26 Number of HSP's better than 10.0 without gapping: 4784 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4997 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6655306086 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
