ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal33f04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1MAD14_ORYSA (Q7Y023) MADS-box transcription factor 14 (OsMADS14)... 63 5e-10
2MAD15_ORYSA (Q6Q9I2) MADS-box transcription factor 15 (OsMADS15)... 32 0.94
3MYC_DROME (Q9W4S7) Myc protein (dMyc1) (dMyc) (Diminutive protein) 31 2.1
4FCTA_STRAW (Q82M40) Probable formyl-coenzyme A transferase (EC 2... 29 6.1
5LOZEN_DROME (Q9W349) Protein lozenge 29 6.1
6DUFFY_BOVIN (Q9GLX0) Duffy antigen/chemokine receptor (CD234 ant... 29 7.9
7MOT2_HUMAN (O60669) Monocarboxylate transporter 2 (MCT 2) 24 10.0

>MAD14_ORYSA (Q7Y023) MADS-box transcription factor 14 (OsMADS14) (Protein|
           APETALA1-like B) (Protein AGAMOUS-like 10) (FDRMADS6)
           (RMADS211)
          Length = 246

 Score = 62.8 bits (151), Expect = 5e-10
 Identities = 31/55 (56%), Positives = 36/55 (65%)
 Frame = -1

Query: 498 TXXXXXSFMMRDAPPVADTSNHPAAAGERAEDVAVQPQVPLRTALPLWMVSHING 334
           T     SFMMR+A P  + SN+PAAAGER EDVA      +R  LP WM+SHING
Sbjct: 192 TSSSSSSFMMREALPTTNISNYPAAAGERIEDVAAGQPQHVRIGLPPWMLSHING 246



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>MAD15_ORYSA (Q6Q9I2) MADS-box transcription factor 15 (OsMADS15) (Protein|
           APETALA1-like A) (FDRMADS3) (RMADS215)
          Length = 267

 Score = 32.0 bits (71), Expect = 0.94
 Identities = 21/42 (50%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = -1

Query: 459 PPVADTSNHPAAAGERAEDVAVQPQVPLRTA-LPLWMVSHIN 337
           PPV     + AAA   A  VA Q QV LR   LP WM+SH+N
Sbjct: 228 PPVMMGERNDAAA---AAAVAAQGQVQLRIGGLPPWMLSHLN 266



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>MYC_DROME (Q9W4S7) Myc protein (dMyc1) (dMyc) (Diminutive protein)|
          Length = 717

 Score = 30.8 bits (68), Expect = 2.1
 Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 12/62 (19%)
 Frame = +2

Query: 35  IHRNNTQEQRVSSKVENSSL-MLHINYMVDYSYSHL-----------SPGGKETEVDEVK 178
           I  NN      ++K++N+S  MLH+ ++ D+SY+             +P   + E+D V 
Sbjct: 358 ITTNNNNSNNKNNKLKNNSNGMLHMMHITDHSYTRCNDMVDDGPNLETPSDSDEEIDVVS 417

Query: 179 YT 184
           YT
Sbjct: 418 YT 419



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>FCTA_STRAW (Q82M40) Probable formyl-coenzyme A transferase (EC 2.8.3.16)|
           (Formyl-CoA transferase)
          Length = 409

 Score = 29.3 bits (64), Expect = 6.1
 Identities = 17/48 (35%), Positives = 20/48 (41%), Gaps = 6/48 (12%)
 Frame = +3

Query: 267 PGWPVQLVTR-TE*YAYM-----GWKPFSR*CGSPSTVEAPSGVGPEA 392
           PGW V+        Y Y+     GWKP S   G P   + P    PEA
Sbjct: 245 PGWAVKCAPGGPNDYVYVIVQPVGWKPLSELIGRPELADDPEWATPEA 292



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>LOZEN_DROME (Q9W349) Protein lozenge|
          Length = 826

 Score = 29.3 bits (64), Expect = 6.1
 Identities = 15/33 (45%), Positives = 18/33 (54%)
 Frame = -1

Query: 456 PVADTSNHPAAAGERAEDVAVQPQVPLRTALPL 358
           P A  S H  AAGE   D+A Q +  L+  LPL
Sbjct: 23  PSASPSGHTGAAGESQLDLASQTESQLQLGLPL 55



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>DUFFY_BOVIN (Q9GLX0) Duffy antigen/chemokine receptor (CD234 antigen)|
          Length = 330

 Score = 28.9 bits (63), Expect = 7.9
 Identities = 14/43 (32%), Positives = 25/43 (58%)
 Frame = +2

Query: 83  NSSLMLHINYMVDYSYSHLSPGGKETEVDEVKYTHSCSLLLYS 211
           ++ L +  ++++D+   +  P   ET+V+     HSCSLL YS
Sbjct: 13  STKLAIKEDFLIDFPEDYY-PDYNETDVEAAAPCHSCSLLNYS 54



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>MOT2_HUMAN (O60669) Monocarboxylate transporter 2 (MCT 2)|
          Length = 478

 Score = 24.3 bits (51), Expect(2) = 10.0
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = +2

Query: 137 LSPGGKETEVDEVKYTHSCSLLLYSDFFSSPLHGVSMFATA*YTR 271
           L+P  K+  +DE       S++ + D F+ P   V + A + Y R
Sbjct: 268 LAPYAKDQGIDEYSAAFLLSVMAFVDMFARP--SVGLIANSKYIR 310



 Score = 22.7 bits (47), Expect(2) = 10.0
 Identities = 7/8 (87%), Positives = 8/8 (100%)
 Frame = +1

Query: 397 CHILCPLA 420
           CH+LCPLA
Sbjct: 327 CHLLCPLA 334


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 73,981,621
Number of Sequences: 219361
Number of extensions: 1547730
Number of successful extensions: 3472
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3385
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3471
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3523384522
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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