>RPO2_SHEVK (P16716) DNA-directed RNA polymerase 132 kDa polypeptide (EC|
           2.7.7.6) (HM1 protein) (Fragment)
          Length = 919

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 14/60 (23%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
 Frame = -2

Query: 204 NALSYFTVSYLMLILSNSTACL-*TLASEYVCGL*RS*KITWHESVTDSVTLLYEHLTPV 28
           N +SYF   Y + + ++  ACL   L  ++V    R  ++ +  ++   +TL+ +H+  +
Sbjct: 274 NDISYFETGYYITLENSLIACLNPNLVDDFVIDFRRKKRMNYFGNLEIGITLVNDHMNEI 333


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,793,944
Number of Sequences: 219361
Number of extensions: 649009
Number of successful extensions: 1186
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1186
length of database: 80,573,946
effective HSP length: 75
effective length of database: 64,121,871
effective search space used: 1538924904
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)