ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal33e14
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CREG1_MOUSE (O88668) CREG1 protein precursor (Cellular repressor... 29 4.8
2SO1A2_HUMAN (P46721) Solute carrier organic anion transporter fa... 28 8.2
3ARR13_ARATH (Q9ZVD3) Putative two-component response regulator A... 28 8.2

>CREG1_MOUSE (O88668) CREG1 protein precursor (Cellular repressor of|
           E1A-stimulated genes 1)
          Length = 220

 Score = 29.3 bits (64), Expect = 4.8
 Identities = 18/46 (39%), Positives = 20/46 (43%)
 Frame = +2

Query: 218 RQTRAKLLAQTSSALFISPVDTEGFLSSGDWGRIVIDFRPQATPPR 355
           R   A LLA    AL +SP    G    GDW    +D R    PPR
Sbjct: 10  RSLLAALLAPALVALLVSPASGRGGRDHGDWD---VDRRLPPLPPR 52



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>SO1A2_HUMAN (P46721) Solute carrier organic anion transporter family member 1A2|
           (Solute carrier family 21 member 3) (Sodium-independent
           organic anion transporter) (Organic anion-transporting
           polypeptide 1) (OATP1) (OATP-A)
          Length = 670

 Score = 28.5 bits (62), Expect = 8.2
 Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
 Frame = -2

Query: 128 GTGIQLSDGDCSCPGTEIQLSDGVHLC----YCXVMIRYQLLLS 9
           GTGI +   +CSC  T    S  + LC     C +M++Y L+LS
Sbjct: 474 GTGINMVFQNCSCIQTSGNSSAVLGLCDKGPDCSLMLQYFLILS 517



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>ARR13_ARATH (Q9ZVD3) Putative two-component response regulator ARR13|
          Length = 572

 Score = 28.5 bits (62), Expect = 8.2
 Identities = 13/61 (21%), Positives = 28/61 (45%)
 Frame = +3

Query: 108 RQLYSRALIAHSRSRPDLQASITFSLTFYSYLARGKSARQEPSCLHKPAVLYSSALWIQK 287
           R  YS ++  HSR   + +  + ++   Y+Y+ R  S   +PS   +   ++   +   K
Sbjct: 328 RSFYSESVHGHSRLLSEAREPVRYNQMSYNYMNRNISFENQPSQNEETRTVFEPPVMANK 387

Query: 288 V 290
           +
Sbjct: 388 I 388


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,153,937
Number of Sequences: 219361
Number of extensions: 1330446
Number of successful extensions: 2983
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2904
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2981
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2793557952
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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