>ATPG_MYCTU (P63671) ATP synthase gamma chain (EC 3.6.3.14) (ATP synthase F1|
           sector gamma subunit)
          Length = 305

 Score = 28.9 bits (63), Expect = 5.2
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = -3

Query: 379 HRLCPMVPTHAKEEIASSTLMSPEADSKM 293
           HR+ PMV  + +E+I   TL S E D+ M
Sbjct: 200 HRIAPMVVEYVEEDIGPRTLYSFEPDATM 228

>ATPG_MYCBO (P63672) ATP synthase gamma chain (EC 3.6.3.14) (ATP synthase F1|
           sector gamma subunit)
          Length = 305

 Score = 28.9 bits (63), Expect = 5.2
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = -3

Query: 379 HRLCPMVPTHAKEEIASSTLMSPEADSKM 293
           HR+ PMV  + +E+I   TL S E D+ M
Sbjct: 200 HRIAPMVVEYVEEDIGPRTLYSFEPDATM 228

>YEK9_SCHPO (O36021) Hypothetical protein C4F10.09c in chromosome I|
          Length = 860

 Score = 28.9 bits (63), Expect = 5.2
 Identities = 12/48 (25%), Positives = 26/48 (54%)
 Frame = +2

Query: 50  TCI*EPRKYRSRYHSDVTLVSSYVLYGERRTIQAKIKMQIQNHILLPF 193
           +C+ E   + + +H  V+L++  ++YGE+   +  + +   NH L  F
Sbjct: 588 SCLWEIHPFLNHFHPTVSLLAKSLVYGEKILGKPNLSLHTLNHFLDKF 635

>PIP1_DROME (P25455) 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase|
           classes I and II (EC 3.1.4.11) (Phosphoinositide
           phospholipase C)
          Length = 1312

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -3

Query: 349 AKEEIASSTLMSPEADSKMPGTTPGAPSGDQ 257
           +K+   SS   S   D  +P TTP  PSG++
Sbjct: 553 SKDSTGSSDSDSSSEDESLPNTTPNLPSGNE 583

>PT494_SACBA (O59961) COX3 mRNA-specific translational activator PET494|
          Length = 489

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 10/60 (16%)
 Frame = +1

Query: 115 LRTLWRKTNHPGENQNANTE--------SYFTTISVNFERIF--VTLKAELPLPAQSIDL 264
           +RTLWR  N PG      T         +Y T ++V+ ER+F    + A++ L  Q  +L
Sbjct: 61  MRTLWRYFNAPGNLMFVTTNIITFTGIVAYNTMVTVSNERVFEEQMIAAQMSLAKQKEEL 120

>FLL_PINRA (O04116) Floricaula/leafy-like protein (PRFLL)|
          Length = 411

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
 Frame = +1

Query: 322 ESRMRFLPLRVLEPSDIVYGTANGLQ--FDLLDLC 420
           E R R  P  V EP ++  G  NGL   FDL + C
Sbjct: 248 EERQREHPFIVTEPGELARGKKNGLDYLFDLYEQC 282

>SNAI_MOUSE (Q02085) Zinc finger protein SNAI1 (Protein snail homolog) (Protein|
           sna)
          Length = 264

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 25/81 (30%), Positives = 34/81 (41%), Gaps = 1/81 (1%)
 Frame = +3

Query: 114 ATYSMEKDEPSRRKSKCKYRIIFYYHFGKL*THIR-YTEG*IATSCAIY*SPDGAPGVVP 290
           A  S+ KD  SR+   CKY    Y   G L  HIR +T   + T+C       G     P
Sbjct: 140 ARLSVAKDPQSRKIFNCKYCNKEYLSLGALKMHIRSHTLPCVCTTC-------GKAFSRP 192

Query: 291 GILESASGDIRVEDAISSFAC 353
            +L+   G +R       F+C
Sbjct: 193 WLLQ---GHVRTHTGEKPFSC 210

>MUS81_MOUSE (Q91ZJ0) Crossover junction endonuclease MUS81 (EC 3.1.22.-)|
          Length = 551

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 16/50 (32%), Positives = 23/50 (46%)
 Frame = -3

Query: 376 RLCPMVPTHAKEEIASSTLMSPEADSKMPGTTPGAPSGDQ*IAQEVAIQP 227
           RLC M+    K+ +AS    +P + S   G + G P   Q  +  V  QP
Sbjct: 72  RLCRMLDEKLKQHLASGGDHAPSSPSGKKGASKGPPEQVQDSSMPVPTQP 121


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 64,977,236
Number of Sequences: 219361
Number of extensions: 1351951
Number of successful extensions: 3468
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3397
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3468
length of database: 80,573,946
effective HSP length: 100
effective length of database: 58,637,846
effective search space used: 2286875994
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)