>ref|XM_493785.1| Oryza sativa (japonica cultivar-group), Ozsa8504 predicted mRNA
          Length = 1314

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 83/97 (85%), Gaps = 3/97 (3%)
 Strand = Plus / Minus

                                                                        
Query: 307  cgccatcccatcgtcaccgatcagcccgccgccgtcgctcttgagccacttctttgccgt 366
            ||||||||| ||||| |||||||||||| |    |||||||||||||||| ||| |  ||
Sbjct: 1131 cgccatcccgtcgtcgccgatcagcccgtca---tcgctcttgagccactgcttggtggt 1075

                                                 
Query: 367  gctgcggtacccggtggcgaagacgatggcatcgaag 403
            ||| ||||| |||||||||||||||||||| ||||||
Sbjct: 1074 gctccggtaaccggtggcgaagacgatggcgtcgaag 1038



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 81/99 (81%)
 Strand = Plus / Minus

                                                                        
Query: 193  ctgcctgctgatgtcctccgcgatgaactccccgtctgtgccgctgccgtagatccctct 252
            |||| |||||||||| || ||||||| |||| ||||   ||||||||||||||| || ||
Sbjct: 1254 ctgcttgctgatgtcgtcggcgatgagctccgcgtcctcgccgctgccgtagattcccct 1195

                                                   
Query: 253  ccctgccagcccagcgcggtacaacccattctccccctt 291
            ||   ||| ||| |||| ||||| ||| |||||||||||
Sbjct: 1194 cctcaccatcccggcgcagtacagcccgttctccccctt 1156

>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 51/58 (87%)
 Strand = Plus / Minus

                                                                         
Query: 346     cttgagccacttctttgccgtgctgcggtacccggtggcgaagacgatggcatcgaag 403
               ||||||||||| ||| |  ||||| ||||| |||||||||||||||||||| ||||||
Sbjct: 9512977 cttgagccactgcttggtggtgctccggtaaccggtggcgaagacgatggcgtcgaag 9512920



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 81/99 (81%)
 Strand = Plus / Minus

                                                                           
Query: 193     ctgcctgctgatgtcctccgcgatgaactccccgtctgtgccgctgccgtagatccctct 252
               |||| |||||||||| || ||||||| |||| ||||   ||||||||||||||| || ||
Sbjct: 9514018 ctgcttgctgatgtcgtcggcgatgagctccgcgtcctcgccgctgccgtagattcccct 9513959

                                                      
Query: 253     ccctgccagcccagcgcggtacaacccattctccccctt 291
               ||   ||| ||| |||| ||||| ||| |||||||||||
Sbjct: 9513958 cctcaccatcccggcgcagtacagcccgttctccccctt 9513920



 Score = 50.1 bits (25), Expect = 0.007
 Identities = 55/65 (84%)
 Strand = Plus / Minus

                                                                           
Query: 365     gtgctgcggtacccggtggcgaagacgatggcatcgaagcggtgccgctccccgccggcg 424
               ||||| ||||| |||||||||||||||| ||| ||||||  ||| ||||  ||| |||||
Sbjct: 9491946 gtgctccggtagccggtggcgaagacgacggcgtcgaaggcgtggcgctggccgtcggcg 9491887

                    
Query: 425     aactc 429
               |||||
Sbjct: 9491886 aactc 9491882



 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 158      ccatcgcctccgtcatcgcc 177
                ||||||||||||||||||||
Sbjct: 25897370 ccatcgcctccgtcatcgcc 25897389



 Score = 40.1 bits (20), Expect = 6.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                           
Query: 307     cgccatcccatcgtcaccgatcagcccg 334
               ||||||||| ||||| ||||||||||||
Sbjct: 9513895 cgccatcccgtcgtcgccgatcagcccg 9513868



 Score = 40.1 bits (20), Expect = 6.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                           
Query: 307     cgccatcccatcgtcaccgatcagcccg 334
               ||||||||| ||||| ||||||||||||
Sbjct: 9492619 cgccatcccgtcgtcgccgatcagcccg 9492592

>dbj|AP000837.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
             clone:P0424A08
          Length = 151294

 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 51/58 (87%)
 Strand = Plus / Minus

                                                                       
Query: 346   cttgagccacttctttgccgtgctgcggtacccggtggcgaagacgatggcatcgaag 403
             ||||||||||| ||| |  ||||| ||||| |||||||||||||||||||| ||||||
Sbjct: 46406 cttgagccactgcttggtggtgctccggtaaccggtggcgaagacgatggcgtcgaag 46349



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 81/99 (81%)
 Strand = Plus / Minus

                                                                         
Query: 193   ctgcctgctgatgtcctccgcgatgaactccccgtctgtgccgctgccgtagatccctct 252
             |||| |||||||||| || ||||||| |||| ||||   ||||||||||||||| || ||
Sbjct: 47447 ctgcttgctgatgtcgtcggcgatgagctccgcgtcctcgccgctgccgtagattcccct 47388

                                                    
Query: 253   ccctgccagcccagcgcggtacaacccattctccccctt 291
             ||   ||| ||| |||| ||||| ||| |||||||||||
Sbjct: 47387 cctcaccatcccggcgcagtacagcccgttctccccctt 47349



 Score = 50.1 bits (25), Expect = 0.007
 Identities = 55/65 (84%)
 Strand = Plus / Minus

                                                                         
Query: 365   gtgctgcggtacccggtggcgaagacgatggcatcgaagcggtgccgctccccgccggcg 424
             ||||| ||||| |||||||||||||||| ||| ||||||  ||| ||||  ||| |||||
Sbjct: 25375 gtgctccggtagccggtggcgaagacgacggcgtcgaaggcgtggcgctggccgtcggcg 25316

                  
Query: 425   aactc 429
             |||||
Sbjct: 25315 aactc 25311



 Score = 40.1 bits (20), Expect = 6.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 307   cgccatcccatcgtcaccgatcagcccg 334
             ||||||||| ||||| ||||||||||||
Sbjct: 47324 cgccatcccgtcgtcgccgatcagcccg 47297



 Score = 40.1 bits (20), Expect = 6.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 307   cgccatcccatcgtcaccgatcagcccg 334
             ||||||||| ||||| ||||||||||||
Sbjct: 26048 cgccatcccgtcgtcgccgatcagcccg 26021

>ref|XM_493782.1| Oryza sativa (japonica cultivar-group), Ozsa8501 predicted mRNA
          Length = 1197

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 100/123 (81%), Gaps = 3/123 (2%)
 Strand = Plus / Minus

                                                                        
Query: 307  cgccatcccatcgtcaccgatcagcccgccgccgtcgctcttgagccacttctttgccgt 366
            ||||||||| ||||| |||||||||||| |    || ||||||||||| | ||| |  ||
Sbjct: 1029 cgccatcccgtcgtcgccgatcagcccgtca---tcactcttgagccagtgcttggtggt 973

                                                                        
Query: 367  gctgcggtacccggtggcgaagacgatggcatcgaagcggtgccgctccccgccggcgaa 426
            ||| ||||| |||||||||||||||| ||| ||||||  ||| ||||  ||| |||||||
Sbjct: 972  gctccggtagccggtggcgaagacgacggcgtcgaaggcgtggcgctggccgtcggcgaa 913

               
Query: 427  ctc 429
            |||
Sbjct: 912  ctc 910

>dbj|AK109645.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-138-H02, full
            insert sequence
          Length = 1384

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 100/123 (81%), Gaps = 3/123 (2%)
 Strand = Plus / Minus

                                                                        
Query: 307  cgccatcccatcgtcaccgatcagcccgccgccgtcgctcttgagccacttctttgccgt 366
            ||||||||| ||||| |||||||||||| |    || ||||||||||| | ||| |  ||
Sbjct: 1063 cgccatcccgtcgtcgccgatcagcccgtca---tcactcttgagccagtgcttggtggt 1007

                                                                        
Query: 367  gctgcggtacccggtggcgaagacgatggcatcgaagcggtgccgctccccgccggcgaa 426
            ||| ||||| |||||||||||||||| ||| ||||||  ||| ||||  ||| |||||||
Sbjct: 1006 gctccggtagccggtggcgaagacgacggcgtcgaaggcgtggcgctggccgtcggcgaa 947

               
Query: 427  ctc 429
            |||
Sbjct: 946  ctc 944

>emb|AL731628.4|OSJN00282 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0088C09,
             complete sequence
          Length = 96079

 Score = 44.1 bits (22), Expect = 0.43
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 403   gcggtgccgctccccgccggcg 424
             ||||||||||||||||||||||
Sbjct: 16778 gcggtgccgctccccgccggcg 16757

>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 44.1 bits (22), Expect = 0.43
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                      
Query: 403      gcggtgccgctccccgccggcg 424
                ||||||||||||||||||||||
Sbjct: 20913554 gcggtgccgctccccgccggcg 20913533

>dbj|AK111485.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-188-G05, full
           insert sequence
          Length = 1070

 Score = 44.1 bits (22), Expect = 0.43
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 403 gcggtgccgctccccgccggcg 424
           ||||||||||||||||||||||
Sbjct: 476 gcggtgccgctccccgccggcg 497

>gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome
          Length = 3345170

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 388     gacgatggcatcgaagcggtg 408
               |||||||||||||||||||||
Sbjct: 3204667 gacgatggcatcgaagcggtg 3204687

>gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete genome
          Length = 3696649

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 376     cccggtggcgaagacgatggc 396
               |||||||||||||||||||||
Sbjct: 2041508 cccggtggcgaagacgatggc 2041528

>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome
          Length = 4892717

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 377     ccggtggcgaagacgatggcatcga 401
               |||||||||||||||||||| ||||
Sbjct: 2082311 ccggtggcgaagacgatggcgtcga 2082287

>emb|AL939109.1|SCO939109 Streptomyces coelicolor A3(2) complete genome; segment 6/29
          Length = 277000

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 323    ccgatcagcccgccgccgtcg 343
              |||||||||||||||||||||
Sbjct: 153403 ccgatcagcccgccgccgtcg 153383

>gb|DQ415456.1| Antheraea roylii D-loop, complete sequence; mitochondrial
          Length = 587

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 1   ttcttatattaaaatatttaa 21
           |||||||||||||||||||||
Sbjct: 331 ttcttatattaaaatatttaa 351

>gb|AE005753.1| Caulobacter crescentus CB15 section 79 of 359 of the complete genome
          Length = 10329

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 377  ccggtggcgaagacgatggcatcga 401
            |||||||||||||||||||| ||||
Sbjct: 2954 ccggtggcgaagacgatggcgtcga 2978

>gb|DQ322651.1| Streptomyces sp. FR1 plasmid pFRL1, complete sequence
          Length = 54288

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 409   ccgctccccgccggcgaactc 429
             |||||||||||||||||||||
Sbjct: 36662 ccgctccccgccggcgaactc 36682

>ref|NM_192293.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 753

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 158 ccatcgcctccgtcatcgcc 177
           ||||||||||||||||||||
Sbjct: 428 ccatcgcctccgtcatcgcc 447

>gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome
          Length = 4403837

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 324   cgatcagcccgccgccgtcg 343
             ||||||||||||||||||||
Sbjct: 48293 cgatcagcccgccgccgtcg 48312

>ref|XM_420224.1| PREDICTED: Gallus gallus similar to RIKEN cDNA 2900009I07
           (LOC422236), mRNA
          Length = 1174

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 327 tcagcccgccgccgtcgctc 346
           ||||||||||||||||||||
Sbjct: 163 tcagcccgccgccgtcgctc 144

>ref|NM_001031118.1| Gallus gallus similar to RIKEN cDNA 2900009I07 (LOC422237), mRNA
          Length = 3016

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 327 tcagcccgccgccgtcgctc 346
           ||||||||||||||||||||
Sbjct: 326 tcagcccgccgccgtcgctc 307

>emb|BX842572.1| Mycobacterium tuberculosis H37Rv complete genome; segment 1/13
          Length = 341957

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 324   cgatcagcccgccgccgtcg 343
             ||||||||||||||||||||
Sbjct: 48349 cgatcagcccgccgccgtcg 48368

>emb|BX248334.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment
             1/14
          Length = 343050

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 324   cgatcagcccgccgccgtcg 343
             ||||||||||||||||||||
Sbjct: 48333 cgatcagcccgccgccgtcg 48352

>emb|AL583923.1|MLEPRTN7 Mycobacterium leprae strain TN complete genome; segment 7/10
          Length = 348950

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 389   acgatggcatcgaagcggtgccgc 412
             |||||||||||||||| |||||||
Sbjct: 81606 acgatggcatcgaagcagtgccgc 81629

>emb|AJ719697.1| Gallus gallus mRNA for hypothetical protein, clone 5g5
          Length = 3043

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 327 tcagcccgccgccgtcgctc 346
           ||||||||||||||||||||
Sbjct: 326 tcagcccgccgccgtcgctc 307

>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 328      cagcccgccgccgtcgctct 347
                ||||||||||||||||||||
Sbjct: 23574182 cagcccgccgccgtcgctct 23574201

>dbj|AP003725.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0510C12
          Length = 177049

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 158    ccatcgcctccgtcatcgcc 177
              ||||||||||||||||||||
Sbjct: 137294 ccatcgcctccgtcatcgcc 137313

>dbj|AP003629.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0481H08
          Length = 146841

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 328   cagcccgccgccgtcgctct 347
             ||||||||||||||||||||
Sbjct: 55146 cagcccgccgccgtcgctct 55165

>emb|BX284684.8| Zebrafish DNA sequence from clone DKEY-14I10 in linkage group 8, complete
              sequence
          Length = 163766

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 2      tcttatattaaaatatttaa 21
              ||||||||||||||||||||
Sbjct: 149911 tcttatattaaaatatttaa 149892

>gb|AE001437.1| Clostridium acetobutylicum ATCC 824, complete genome
          Length = 3940880

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 1      ttcttatattaaaatattta 20
              ||||||||||||||||||||
Sbjct: 506798 ttcttatattaaaatattta 506817

>gb|AD000013.1|MSGY219 Mycobacterium tuberculosis sequence from clone y219
          Length = 38721

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 324   cgatcagcccgccgccgtcg 343
             ||||||||||||||||||||
Sbjct: 13365 cgatcagcccgccgccgtcg 13346

>emb|AL355887.4|CNS05TCY Human chromosome 14 DNA sequence BAC R-179O11 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 159183

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 1      ttcttatattaaaatattta 20
              ||||||||||||||||||||
Sbjct: 149633 ttcttatattaaaatattta 149652

>emb|AL161713.4|CNS01RHE Human chromosome 14 DNA sequence BAC R-22K10 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 157383

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 1      ttcttatattaaaatattta 20
              ||||||||||||||||||||
Sbjct: 157380 ttcttatattaaaatattta 157361


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,818,093
Number of Sequences: 3902068
Number of extensions: 3818093
Number of successful extensions: 90573
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 89996
Number of HSP's gapped (non-prelim): 574
length of query: 493
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 471
effective length of database: 17,147,199,772
effective search space: 8076331092612
effective search space used: 8076331092612
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)