>VND_DROME (P22808) Homeobox protein vnd (Protein ventral nervous system|
           defective) (Homeobox protein NK-2)
          Length = 723

 Score = 31.2 bits (69), Expect = 0.99
 Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +3

Query: 279 TQDPRDLQTTAEGLVEEHPSLELRHEREPRQER-DRGEEQQPHD 407
           T  P    T    L    PSLE + ERE R++R DR E Q+ H+
Sbjct: 41  TVSPSSPATPKRPLRTSTPSLERKREREDREDREDRKERQERHE 84

>YDVG_SCHPO (O14232) Putative helicase C6F12.16c (EC 3.6.1.-)|
          Length = 1117

 Score = 30.4 bits (67), Expect = 1.7
 Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 8/59 (13%)
 Frame = +3

Query: 36  KHTLLLLQTRPCIHMIILCTTTTLPMQFAAWNTYIH--------TTDKPQPLQPSSMPT 188
           + T++LL  +   H + L  T    MQFA W T IH        T  +P PLQ    P+
Sbjct: 326 EETIILLPDKS--HFVFLSATIPNAMQFAEWITKIHRQPCHVVYTDFRPTPLQHYLFPS 382

>LEGA_PEA (P02857) Legumin A precursor [Contains: Legumin A alpha chain|
           (Legumin A acidic chain); Legumin A beta chain (Legumin
           A basic chain)]
          Length = 517

 Score = 30.0 bits (66), Expect = 2.2
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +3

Query: 333 PSLELRHEREPRQERDRGEEQQP 401
           P  + RH+R  RQE D  EE+QP
Sbjct: 259 PEKQARHQRGSRQEEDEDEEKQP 281

>APX1_CAEEL (P41990) Anterior pharynx in excess protein 1 precursor|
          Length = 515

 Score = 30.0 bits (66), Expect = 2.2
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = -2

Query: 134 CIPGCKLHWQCSSSAQDNHMDAWSG 60
           CI   KLHW+CS+         WSG
Sbjct: 145 CIANAKLHWECSTHGVRRCSAGWSG 169

>HEPA_VZVD (P09300) DNA helicase/primase complex-associated protein|
          Length = 771

 Score = 29.3 bits (64), Expect = 3.7
 Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 7/39 (17%)
 Frame = +1

Query: 85  SCALL--LHCQCNLQPGIHTYI-----LLTSHNRYSHPA 180
           SCA +  + C  +L+P IHT++     LL +HN +S P+
Sbjct: 717 SCACIPPIDCAAHLKPLIHTFVTIINHLLDAHNDFSSPS 755

>AT221_ASPFU (Q4WH97) Autophagy-related protein 22-1|
          Length = 609

 Score = 28.9 bits (63), Expect = 4.9
 Identities = 15/31 (48%), Positives = 17/31 (54%)
 Frame = +3

Query: 318 LVEEHPSLELRHEREPRQERDRGEEQQPHDD 410
           LV  HPS+ LR  REPR   D    Q+ H D
Sbjct: 203 LVRHHPSV-LRSAREPRPALDDSRAQEGHSD 232

>RAD21_MOUSE (Q61550) Double-strand-break repair protein rad21 homolog (Pokeweed|
           agglutinin-binding protein 29) (PW29) (SCC1 homolog)
          Length = 635

 Score = 28.5 bits (62), Expect = 6.4
 Identities = 16/50 (32%), Positives = 25/50 (50%)
 Frame = +3

Query: 261 PVLLVPTQDPRDLQTTAEGLVEEHPSLELRHEREPRQERDRGEEQQPHDD 410
           PV L P + P   Q          P LEL  E+E  +E+++ EE++  D+
Sbjct: 505 PVELPPEEPPNICQLI--------PELELLPEKEKEKEKEKEEEEEEEDE 546

>ANI3_CAEEL (Q9XWN6) Anillin-like protein 3|
          Length = 709

 Score = 28.5 bits (62), Expect = 6.4
 Identities = 18/48 (37%), Positives = 23/48 (47%)
 Frame = +1

Query: 271 LCPPRILEICRPRLKAWLKSIRVWNSDTNGNHARNAIGVKSSSPMMIS 414
           L   R+L ICR RLK  L+ +R   + T   H    I     S M+IS
Sbjct: 367 LASQRVLLICRERLKVQLEEVRRLQAMTVVRHPPPPINRHFKSTMVIS 414

>INVO_SAGOE (P24712) Involucrin|
          Length = 493

 Score = 28.5 bits (62), Expect = 6.4
 Identities = 26/97 (26%), Positives = 41/97 (42%), Gaps = 7/97 (7%)
 Frame = +3

Query: 129 NTYIHTTDKPQPLQPSSMPTIVYLPYY*L-RRQSIHLPIVLAPRRPVLLVPTQDPRDLQT 305
           NT      +P PL P      V LP   L + +  H+ IV         VP Q+    Q 
Sbjct: 28  NTQQEQRKQPAPLPPPCQKVPVELPVEVLSKHEEKHMTIVKG-------VPEQECEQQQP 80

Query: 306 TAEGLVEEHPSLELRH------EREPRQERDRGEEQQ 398
             + L ++H   +  H      E++ +QE+ + E+QQ
Sbjct: 81  QEQELQQQHWEQDKEHQKAENPEQQLKQEKVQREKQQ 117

>TRHY_HUMAN (Q07283) Trichohyalin|
          Length = 1898

 Score = 28.1 bits (61), Expect = 8.3
 Identities = 20/53 (37%), Positives = 25/53 (47%)
 Frame = +3

Query: 255  RRPVLLVPTQDPRDLQTTAEGLVEEHPSLELRHEREPRQERDRGEEQQPHDDL 413
            RR  L    +   +LQ   E L+ E P    R ERE RQ R+  E QQ  + L
Sbjct: 1089 RRQELERQYRKEEELQQEEEQLLREEPEKRRRQERE-RQCREEEELQQEEEQL 1140

>TMBI1_MOUSE (Q8BJZ3) Transmembrane BAX inhibitor motif-containing protein 1|
           (RECS1 protein) (Responsive to centrifugal force and
           shear stress gene 1 protein)
          Length = 309

 Score = 28.1 bits (61), Expect = 8.3
 Identities = 12/47 (25%), Positives = 23/47 (48%)
 Frame = -3

Query: 178 LDGCSGCGLSVVCMYVFQAANCIGNVVVVHKIIIWMHGLVCSSSSVC 38
           +D  S  GL  V   V      + ++V++ K I W+H +  +  ++C
Sbjct: 212 VDFTSCTGLFCVLGIVLMVTGIVTSIVLIFKYIYWLHMVYAALGAIC 258

>CF2_DROME (P20385) Chorion transcription factor Cf2, isoforms I/II|
          Length = 510

 Score = 28.1 bits (61), Expect = 8.3
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = +3

Query: 273 VPTQDPRDLQTTAEGLVEEHPSLELRHEREPRQERDRGEEQQ 398
           +P   PRD++ T E   E+H   +L+ E   +Q+  + ++QQ
Sbjct: 210 LPAMAPRDMRLTPE---EQHHQQQLQAEHHHQQQHQQQQQQQ 248

>CF23_DROME (Q01522) Chorion transcription factor Cf2, isoform III|
          Length = 514

 Score = 28.1 bits (61), Expect = 8.3
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = +3

Query: 273 VPTQDPRDLQTTAEGLVEEHPSLELRHEREPRQERDRGEEQQ 398
           +P   PRD++ T E   E+H   +L+ E   +Q+  + ++QQ
Sbjct: 210 LPAMAPRDMRLTPE---EQHHQQQLQAEHHHQQQHQQQQQQQ 248

>NDF1_XENLA (Q91616) Neurogenic differentiation factor 1 (NeuroD1)|
          Length = 352

 Score = 28.1 bits (61), Expect = 8.3
 Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = +3

Query: 279 TQDPRDLQTTAEGLVEEHPSLELRHER-EPRQERDRGEEQQPHDD 410
           +QD  DL+     L++E     L H   E  +E D G+E++  D+
Sbjct: 28  SQDENDLEKKEGELMKEDDEDSLNHHNGEENEEEDEGDEEEEDDE 72

>BRE1A_HUMAN (Q5VTR2) Ubiquitin-protein ligase BRE1A (EC 6.3.2.-) (BRE1-A) (RING|
           finger protein 20)
          Length = 975

 Score = 28.1 bits (61), Expect = 8.3
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +3

Query: 294 DLQTTAEGLVEEHPSLELRHEREPRQERDRGEEQQP 401
           DL T  + LV   P  +    +E + +R+RGE Q+P
Sbjct: 119 DLLTERKALVVPEPEPDSDSNQERKDDRERGEGQEP 154


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,682,526
Number of Sequences: 219361
Number of extensions: 1083780
Number of successful extensions: 3936
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 3675
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3916
length of database: 80,573,946
effective HSP length: 100
effective length of database: 58,637,846
effective search space used: 2169600302
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)