| Clone Name | rbaal33b24 |
|---|---|
| Clone Library Name | barley_pub |
>emb|AJ635225.1| Triticum aestivum mRNA for acid beta-fructofuranosidase precursor (inv1 gene) Length = 2250 Score = 157 bits (79), Expect = 1e-35 Identities = 138/159 (86%) Strand = Plus / Minus Query: 9 ctaaacaaaaataaantttccattttgtttttacagggaggcagtgtaggcctggttgta 68 |||||||||||||| ||| |||||| ||||||||| |||| |||||||||| ||||| Sbjct: 2093 ctaaacaaaaataatatttgcattttctttttacagtgaggtcatgtaggcctgattgta 2034 Query: 69 ggaggagtccatctcgtggatgacgaggcttgtggtggtgacccgggcgccggtggcgtt 128 |||||||||||||||||||| |||||| || ||| | |||||||||||| ||||||||| Sbjct: 2033 ggaggagtccatctcgtggacgacgagcctcgtgacgttgacccgggcgctggtggcgtt 1974 Query: 129 gttgaanaggtataccccagcnttgncgtagatggcctc 167 |||||| ||||| |||||||| ||| | ||||||||||| Sbjct: 1973 gttgaagaggtagaccccagcgttggcatagatggcctc 1935
>gb|AY082350.1| Lolium perenne fructosyltransferase (FT2) mRNA, complete cds Length = 2337 Score = 133 bits (67), Expect = 2e-28 Identities = 97/108 (89%) Strand = Plus / Minus Query: 60 ctggttgtaggaggagtccatctcgtggatgacgaggcttgtggtggtgacccgggcgcc 119 |||||||||||||| ||||||||| |||| |||||| || |||| |||||||||||| || Sbjct: 2078 ctggttgtaggaggggtccatctcatggacgacgagactggtggcggtgacccgggcacc 2019 Query: 120 ggtggcgttgttgaanaggtataccccagcnttgncgtagatggcctc 167 ||||||||||||||| ||||||||||| || ||| ||||||||||||| Sbjct: 2018 ggtggcgttgttgaagaggtataccccggcattggcgtagatggcctc 1971
>gb|DQ267825.1| Dendrocalamopsis oldhamii vacuolar invertase BObetaFRUCT3 mRNA, complete cds Length = 2155 Score = 123 bits (62), Expect = 2e-25 Identities = 101/115 (87%) Strand = Plus / Minus Query: 53 tgtaggcctggttgtaggaggagtccatctcgtggatgacgaggcttgtggtggtgaccc 112 ||||||| |||||||||||||||||||||||||||| ||||||||| ||| |||||| | Sbjct: 1969 tgtaggcttggttgtaggaggagtccatctcgtggacgacgaggctcttggcggtgacgc 1910 Query: 113 gggcgccggtggcgttgttgaanaggtataccccagcnttgncgtagatggcctc 167 ||||| |||||| |||||||| ||||| ||||| || ||| ||||||||||||| Sbjct: 1909 gggcgttggtggcattgttgaagaggtacacccctgcgttggcgtagatggcctc 1855
>emb|AJ532549.1|LTE532549 Lolium temulentum mRNA for putative soluble acid invertase (inv1:4 gene) Length = 2407 Score = 93.7 bits (47), Expect = 2e-16 Identities = 110/132 (83%) Strand = Plus / Minus Query: 36 tttttacagggaggcagtgtaggcctggttgtaggaggagtccatctcgtggatgacgag 95 ||||||||| || || |||||||||| ||||||||| |||||||||| || | |||| Sbjct: 2170 tttttacagtgaagccatgtaggcctgattgtaggagaagtccatctcatgtactgcgag 2111 Query: 96 gcttgtggtggtgacccgggcgccggtggcgttgttgaanaggtataccccagcnttgnc 155 ||| |||| |||||| ||||| |||||||| |||||||| ||||| ||||| | ||| | Sbjct: 2110 gctagtggcggtgacgcgggcaccggtggcattgttgaagaggtacaccccggtgttggc 2051 Query: 156 gtagatggcctc 167 |||||||||||| Sbjct: 2050 gtagatggcctc 2039
>gb|AY575557.1| Oryza sativa (indica cultivar-group) cultivar IR64 vacuolar invertase 2 mRNA, partial cds Length = 503 Score = 91.7 bits (46), Expect = 6e-16 Identities = 97/115 (84%) Strand = Plus / Minus Query: 53 tgtaggcctggttgtaggaggagtccatctcgtggatgacgaggcttgtggtggtgaccc 112 ||||||| |||||||||||||||||||||||||||| |||||| | ||| ||||| | Sbjct: 259 tgtaggcttggttgtaggaggagtccatctcgtggacgacgagcttcttggccgtgacgc 200 Query: 113 gggcgccggtggcgttgttgaanaggtataccccagcnttgncgtagatggcctc 167 | |||| ||||||||||||||| ||| | || || || ||| ||||||||||||| Sbjct: 199 gcgcgctggtggcgttgttgaagaggaagacgccggcgttggcgtagatggcctc 145
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 91.7 bits (46), Expect = 6e-16 Identities = 97/115 (84%) Strand = Plus / Minus Query: 53 tgtaggcctggttgtaggaggagtccatctcgtggatgacgaggcttgtggtggtgaccc 112 ||||||| |||||||||||||||||||||||||||| |||||| | ||| ||||| | Sbjct: 346511 tgtaggcttggttgtaggaggagtccatctcgtggacgacgagcttcttggccgtgacgc 346452 Query: 113 gggcgccggtggcgttgttgaanaggtataccccagcnttgncgtagatggcctc 167 | |||| ||||||||||||||| ||| | || || || ||| ||||||||||||| Sbjct: 346451 gcgcgctggtggcgttgttgaagaggaagacgccggcgttggcgtagatggcctc 346397
>gb|AF276704.1|AF276704 Oryza sativa vacuolar acid invertase (INV3) gene, complete cds Length = 3725 Score = 91.7 bits (46), Expect = 6e-16 Identities = 97/115 (84%) Strand = Plus / Minus Query: 53 tgtaggcctggttgtaggaggagtccatctcgtggatgacgaggcttgtggtggtgaccc 112 ||||||| |||||||||||||||||||||||||||| |||||| | ||| ||||| | Sbjct: 3558 tgtaggcttggttgtaggaggagtccatctcgtggacgacgagcttcttggccgtgacgc 3499 Query: 113 gggcgccggtggcgttgttgaanaggtataccccagcnttgncgtagatggcctc 167 | |||| ||||||||||||||| ||| | || || || ||| ||||||||||||| Sbjct: 3498 gcgcgctggtggcgttgttgaagaggaagacgccggcgttggcgtagatggcctc 3444
>dbj|AP004851.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1359_D06 Length = 146805 Score = 91.7 bits (46), Expect = 6e-16 Identities = 97/115 (84%) Strand = Plus / Minus Query: 53 tgtaggcctggttgtaggaggagtccatctcgtggatgacgaggcttgtggtggtgaccc 112 ||||||| |||||||||||||||||||||||||||| |||||| | ||| ||||| | Sbjct: 75295 tgtaggcttggttgtaggaggagtccatctcgtggacgacgagcttcttggccgtgacgc 75236 Query: 113 gggcgccggtggcgttgttgaanaggtataccccagcnttgncgtagatggcctc 167 | |||| ||||||||||||||| ||| | || || || ||| ||||||||||||| Sbjct: 75235 gcgcgctggtggcgttgttgaagaggaagacgccggcgttggcgtagatggcctc 75181
>dbj|AK072245.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023002K22, full insert sequence Length = 2443 Score = 91.7 bits (46), Expect = 6e-16 Identities = 97/115 (84%) Strand = Plus / Minus Query: 53 tgtaggcctggttgtaggaggagtccatctcgtggatgacgaggcttgtggtggtgaccc 112 ||||||| |||||||||||||||||||||||||||| |||||| | ||| ||||| | Sbjct: 2079 tgtaggcttggttgtaggaggagtccatctcgtggacgacgagcttcttggccgtgacgc 2020 Query: 113 gggcgccggtggcgttgttgaanaggtataccccagcnttgncgtagatggcctc 167 | |||| ||||||||||||||| ||| | || || || ||| ||||||||||||| Sbjct: 2019 gcgcgctggtggcgttgttgaagaggaagacgccggcgttggcgtagatggcctc 1965
>emb|AJ563384.1|ZMA563384 Zea mays partial ivr2 gene for vacuolar invertase, exons 1-2 Length = 1978 Score = 83.8 bits (42), Expect = 2e-13 Identities = 90/107 (84%) Strand = Plus / Minus Query: 61 tggttgtaggaggagtccatctcgtggatgacgaggcttgtggtggtgacccgggcgccg 120 |||||||| || |||||||||||||||| |||||| | |||| |||||||| ||| || Sbjct: 1673 tggttgtatgacgagtccatctcgtggacgacgagcttcgtggccgtgacccgcgcggcg 1614 Query: 121 gtggcgttgttgaanaggtataccccagcnttgncgtagatggcctc 167 |||||||||||||| ||| | || || || ||| ||||||||||||| Sbjct: 1613 gtggcgttgttgaagaggaagacgccggcgttggcgtagatggcctc 1567
>gb|AY107166.1| Zea mays PCO109921 mRNA sequence Length = 1901 Score = 83.8 bits (42), Expect = 2e-13 Identities = 90/107 (84%) Strand = Plus / Minus Query: 61 tggttgtaggaggagtccatctcgtggatgacgaggcttgtggtggtgacccgggcgccg 120 |||||||| || |||||||||||||||| |||||| | |||| |||||||| ||| || Sbjct: 1513 tggttgtatgacgagtccatctcgtggacgacgagcttcgtggccgtgacccgcgcggcg 1454 Query: 121 gtggcgttgttgaanaggtataccccagcnttgncgtagatggcctc 167 |||||||||||||| ||| | || || || ||| ||||||||||||| Sbjct: 1453 gtggcgttgttgaagaggaagacgccggcgttggcgtagatggcctc 1407
>gb|U31451.1|ZMU31451 Zea mays invertase mRNA, partial cds Length = 1530 Score = 83.8 bits (42), Expect = 2e-13 Identities = 90/107 (84%) Strand = Plus / Minus Query: 61 tggttgtaggaggagtccatctcgtggatgacgaggcttgtggtggtgacccgggcgccg 120 |||||||| || |||||||||||||||| |||||| | |||| |||||||| ||| || Sbjct: 1499 tggttgtatgacgagtccatctcgtggacgacgagcttcgtggccgtgacccgcgcggcg 1440 Query: 121 gtggcgttgttgaanaggtataccccagcnttgncgtagatggcctc 167 |||||||||||||| ||| | || || || ||| ||||||||||||| Sbjct: 1439 gtggcgttgttgaagaggaagacgccggcgttggcgtagatggcctc 1393
>gb|AY302083.1| Saccharum hybrid cultivar soluble acid invertase (ShinvA) mRNA, partial cds Length = 2274 Score = 81.8 bits (41), Expect = 6e-13 Identities = 89/106 (83%) Strand = Plus / Minus Query: 61 tggttgtaggaggagtccatctcgtggatgacgaggcttgtggtggtgacccgggcgccg 120 ||||||||||| |||||||||||||||| |||||| | ||| |||||| || ||| || Sbjct: 1898 tggttgtaggacgagtccatctcgtggacgacgagcttcttggcggtgacgcgcgcggcg 1839 Query: 121 gtggcgttgttgaanaggtataccccagcnttgncgtagatggcct 166 |||||||||||||| ||| | || || || ||| |||||||||||| Sbjct: 1838 gtggcgttgttgaagaggaacacgccggcgttggcgtagatggcct 1793
>gb|AF062735.1|AF062735 Saccharum officinarum soluble acid invertase mRNA, partial cds Length = 1808 Score = 81.8 bits (41), Expect = 6e-13 Identities = 89/106 (83%) Strand = Plus / Minus Query: 61 tggttgtaggaggagtccatctcgtggatgacgaggcttgtggtggtgacccgggcgccg 120 ||||||||||| |||||||||||||||| |||||| | ||| |||||| || ||| || Sbjct: 1679 tggttgtaggacgagtccatctcgtggacgacgagcttcttggcggtgacgcgcgcggcg 1620 Query: 121 gtggcgttgttgaanaggtataccccagcnttgncgtagatggcct 166 |||||||||||||| ||| | || || || ||| |||||||||||| Sbjct: 1619 gtggcgttgttgaagaggaacacgccggcgttggcgtagatggcct 1574
>gb|AY023475.1| Oryza sativa microsatellite MRG5800 containing (TCT)X8, closest to marker C1357, genomic sequence Length = 224 Score = 75.8 bits (38), Expect = 4e-11 Identities = 71/82 (86%) Strand = Plus / Minus Query: 53 tgtaggcctggttgtaggaggagtccatctcgtggatgacgaggcttgtggtggtgaccc 112 ||||||| |||||||||||||||||||||||||||| |||||| | ||| ||||| | Sbjct: 85 tgtaggcttggttgtaggaggagtccatctcgtggacgacgagcttcttggccgtgacgc 26 Query: 113 gggcgccggtggcgttgttgaa 134 | |||| ||||||||||||||| Sbjct: 25 gcgcgctggtggcgttgttgaa 4
>gb|AF494041.1| Lolium perenne fructan 6-fructosyltransferase mRNA, complete cds Length = 2279 Score = 73.8 bits (37), Expect = 1e-10 Identities = 49/54 (90%) Strand = Plus / Minus Query: 114 ggcgccggtggcgttgttgaanaggtataccccagcnttgncgtagatggcctc 167 ||||||||||||||||||||| ||||| |||||||| || ||||||||||||| Sbjct: 1871 ggcgccggtggcgttgttgaacaggtacaccccagccctggcgtagatggcctc 1818
>dbj|AB186920.1| Lolium perenne mRNA for putative fructosyltransferase1, complete cds Length = 2268 Score = 73.8 bits (37), Expect = 1e-10 Identities = 49/54 (90%) Strand = Plus / Minus Query: 114 ggcgccggtggcgttgttgaanaggtataccccagcnttgncgtagatggcctc 167 ||||||||||||||||||||| ||||| |||||||| || ||||||||||||| Sbjct: 1865 ggcgccggtggcgttgttgaacaggtacaccccagccctggcgtagatggcctc 1812
>gb|AF083856.1|AF083856 Saccharum hybrid cultivar H65-7052 soluble acid invertase (scinvh3'2) mRNA, partial cds Length = 1402 Score = 73.8 bits (37), Expect = 1e-10 Identities = 88/106 (83%) Strand = Plus / Minus Query: 61 tggttgtaggaggagtccatctcgtggatgacgaggcttgtggtggtgacccgggcgccg 120 ||||||||||| |||||||||||||||| |||||| | ||| |||||| || || || Sbjct: 1006 tggttgtaggacgagtccatctcgtggacgacgagcttcttggcggtgacgcgcacggcg 947 Query: 121 gtggcgttgttgaanaggtataccccagcnttgncgtagatggcct 166 |||||||||||||| ||| | || || || ||| |||||||||||| Sbjct: 946 gtggcgttgttgaagaggaacacgccggcgttggcgtagatggcct 901
>gb|AF062734.1|AF062734 Saccharum robustum soluble acid invertase mRNA, partial cds Length = 1808 Score = 73.8 bits (37), Expect = 1e-10 Identities = 88/106 (83%) Strand = Plus / Minus Query: 61 tggttgtaggaggagtccatctcgtggatgacgaggcttgtggtggtgacccgggcgccg 120 ||||||||||| |||||||||||||||| |||||| | ||| |||||| || ||| || Sbjct: 1679 tggttgtaggacgagtccatctcgtggacgacgagcttcttggcggtgacgcgcgcggcg 1620 Query: 121 gtggcgttgttgaanaggtataccccagcnttgncgtagatggcct 166 |||||||||||||| ||| | || || || ||| |||| ||||||| Sbjct: 1619 gtggcgttgttgaagaggaacacgccggcgttggcgtaaatggcct 1574
>emb|AJ623275.1| Hordeum vulgare mRNA for soluble acid invertase (sai gene) Length = 2038 Score = 63.9 bits (32), Expect = 1e-07 Identities = 83/101 (82%) Strand = Plus / Minus Query: 67 taggaggagtccatctcgtggatgacgaggcttgtggtggtgacccgggcgccggtggcg 126 ||||| || ||||| ||||||| ||||| || |||||||||||| | || ||||| Sbjct: 2019 taggaagaatccatttcgtggaccacgagtctagtggtggtgacctgaattcccgtggca 1960 Query: 127 ttgttgaanaggtataccccagcnttgncgtagatggcctc 167 |||||||| ||||| |||||||| ||| ||||||||||||| Sbjct: 1959 ttgttgaagaggtacaccccagcgttggcgtagatggcctc 1919
>gb|AF069309.1| Triticum aestivum vacuolar invertase (WIVRV) mRNA, partial cds Length = 1840 Score = 56.0 bits (28), Expect = 3e-05 Identities = 46/53 (86%) Strand = Plus / Minus Query: 115 gcgccggtggcgttgttgaanaggtataccccagcnttgncgtagatggcctc 167 |||||||||||||||||||| ||||| || ||||| | ||||||||||||| Sbjct: 1380 gcgccggtggcgttgttgaaaaggtacacgccagcggcggcgtagatggcctc 1328 Score = 38.2 bits (19), Expect = 8.1 Identities = 25/27 (92%) Strand = Plus / Minus Query: 60 ctggttgtaggaggagtccatctcgtg 86 ||||||||||||| |||||||||||| Sbjct: 1435 ctggttgtaggagtcgtccatctcgtg 1409
>gb|AY575717.1| Triticum monococcum vacuolar invertase1 (vin1) mRNA, complete cds Length = 2414 Score = 56.0 bits (28), Expect = 3e-05 Identities = 46/53 (86%) Strand = Plus / Minus Query: 115 gcgccggtggcgttgttgaanaggtataccccagcnttgncgtagatggcctc 167 |||||||||||||||||||| ||||| || ||||| | ||||||||||||| Sbjct: 1929 gcgccggtggcgttgttgaaaaggtacacgccagcggcggcgtagatggcctc 1877
>emb|AJ532550.1|LTE532550 Lolium temulentum mRNA for putative fructan 6-fructosyltransferase (6ft gene) Length = 2331 Score = 50.1 bits (25), Expect = 0.002 Identities = 46/54 (85%) Strand = Plus / Minus Query: 114 ggcgccggtggcgttgttgaanaggtataccccagcnttgncgtagatggcctc 167 |||||||||||| |||||||| ||||| ||||| || | ||||||||||||| Sbjct: 1880 ggcgccggtggcattgttgaacaggtacacccctgccctagcgtagatggcctc 1827
>gb|AY245431.1| Lolium perenne sucrose:sucrose 1-fructosyltransferase mRNA, complete cds Length = 1962 Score = 44.1 bits (22), Expect = 0.13 Identities = 30/33 (90%) Strand = Plus / Minus Query: 114 ggcgccggtggcgttgttgaanaggtatacccc 146 |||||| |||||||||||||| ||||| ||||| Sbjct: 1884 ggcgcccgtggcgttgttgaagaggtagacccc 1852
>dbj|AB088409.1| Triticum aestivum 1-FFT-A mRNA for fructan:fructan 1-fructosyltransferase, complete cds Length = 2304 Score = 44.1 bits (22), Expect = 0.13 Identities = 30/33 (90%) Strand = Plus / Minus Query: 114 ggcgccggtggcgttgttgaanaggtatacccc 146 |||||||||||| |||||||| ||||| ||||| Sbjct: 1941 ggcgccggtggcattgttgaacaggtagacccc 1909
>emb|CR925877.9| Zebrafish DNA sequence from clone DKEY-71B4 in linkage group 1, complete sequence Length = 73246 Score = 42.1 bits (21), Expect = 0.52 Identities = 23/24 (95%) Strand = Plus / Plus Query: 11 aaacaaaaataaantttccatttt 34 ||||||||||||| |||||||||| Sbjct: 28917 aaacaaaaataaagtttccatttt 28940 Score = 42.1 bits (21), Expect = 0.52 Identities = 23/24 (95%) Strand = Plus / Plus Query: 11 aaacaaaaataaantttccatttt 34 ||||||||||||| |||||||||| Sbjct: 15377 aaacaaaaataaagtttccatttt 15400
>gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome Length = 4403837 Score = 40.1 bits (20), Expect = 2.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 101 tggtggtgacccgggcgccggtgg 124 |||||||||||| ||||||||||| Sbjct: 2799802 tggtggtgacccaggcgccggtgg 2799779
>gb|AF481763.1| Lolium perenne fructosyltransferase (FT1) mRNA, complete cds Length = 2386 Score = 40.1 bits (20), Expect = 2.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 60 ctggttgtaggaggagtccatctc 83 |||||||||||| ||||||||||| Sbjct: 1967 ctggttgtaggacgagtccatctc 1944 Score = 38.2 bits (19), Expect = 8.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 116 cgccggtggcgttgttgaa 134 ||||||||||||||||||| Sbjct: 1911 cgccggtggcgttgttgaa 1893
>gb|AC125339.4| Mus musculus BAC clone RP24-356P17 from chromosome 17, complete sequence Length = 156282 Score = 40.1 bits (20), Expect = 2.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 26 ttccattttgtttttacagg 45 |||||||||||||||||||| Sbjct: 122384 ttccattttgtttttacagg 122403
>gb|AC127274.4| Mus musculus BAC clone RP24-156G13 from chromosome 17, complete sequence Length = 177688 Score = 40.1 bits (20), Expect = 2.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 26 ttccattttgtttttacagg 45 |||||||||||||||||||| Sbjct: 177609 ttccattttgtttttacagg 177590
>gb|AC123844.4| Mus musculus BAC clone RP23-416P14 from chromosome 7, complete sequence Length = 198721 Score = 40.1 bits (20), Expect = 2.1 Identities = 22/23 (95%) Strand = Plus / Plus Query: 12 aacaaaaataaantttccatttt 34 |||||||||||| |||||||||| Sbjct: 172652 aacaaaaataaaatttccatttt 172674
>emb|BX842580.1| Mycobacterium tuberculosis H37Rv complete genome; segment 9/13 Length = 346051 Score = 40.1 bits (20), Expect = 2.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 101 tggtggtgacccgggcgccggtgg 124 |||||||||||| ||||||||||| Sbjct: 31278 tggtggtgacccaggcgccggtgg 31255
>emb|BX248342.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment 9/14 Length = 306550 Score = 40.1 bits (20), Expect = 2.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 101 tggtggtgacccgggcgccggtgg 124 |||||||||||| ||||||||||| Sbjct: 260103 tggtggtgacccaggcgccggtgg 260080
>gb|AC119739.5| Homo sapiens 3 BAC RP11-676G20 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 29158 Score = 40.1 bits (20), Expect = 2.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 27 tccattttgtttttacaggg 46 |||||||||||||||||||| Sbjct: 15891 tccattttgtttttacaggg 15910
>gb|AF222944.1| Heteranthelium piliferum sucrose:fructan 6-fructosyltransferase (6-SFT) gene, partial cds Length = 311 Score = 40.1 bits (20), Expect = 2.1 Identities = 25/27 (92%) Strand = Plus / Minus Query: 114 ggcgccggtggcgttgttgaanaggta 140 |||||||||||| |||||||| ||||| Sbjct: 266 ggcgccggtggcattgttgaacaggta 240
>emb|AJ532551.1|LTE532551 Lolium temulentum partial mRNA for putative soluble acid invertase (inv1:2 gene) Length = 1998 Score = 40.1 bits (20), Expect = 2.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 60 ctggttgtaggaggagtccatctc 83 |||||||||||| ||||||||||| Sbjct: 1579 ctggttgtaggacgagtccatctc 1556
>gb|AC025763.5| Homo sapiens chromosome 16 clone CTB-186A5, complete sequence Length = 194690 Score = 40.1 bits (20), Expect = 2.1 Identities = 25/27 (92%) Strand = Plus / Minus Query: 15 aaaaataaantttccattttgttttta 41 ||||||||| ||| ||||||||||||| Sbjct: 171732 aaaaataaactttacattttgttttta 171706
>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome Length = 4352825 Score = 40.1 bits (20), Expect = 2.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 102 ggtggtgacccgggcgccggtggc 125 ||||||||||||||||||| |||| Sbjct: 3419289 ggtggtgacccgggcgccgctggc 3419312
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 2.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 111 ccgggcgccggtggcgttgt 130 |||||||||||||||||||| Sbjct: 24600216 ccgggcgccggtggcgttgt 24600235
>gb|AC137643.3| Homo sapiens chromosome 16 clone RP11-95H3, complete sequence Length = 159836 Score = 40.1 bits (20), Expect = 2.1 Identities = 25/27 (92%) Strand = Plus / Plus Query: 15 aaaaataaantttccattttgttttta 41 ||||||||| ||| ||||||||||||| Sbjct: 85659 aaaaataaactttacattttgttttta 85685
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 2.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 106 gtgacccgggcgccggtggc 125 |||||||||||||||||||| Sbjct: 2769290 gtgacccgggcgccggtggc 2769309
>dbj|AP005809.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBb0039M16 Length = 133229 Score = 40.1 bits (20), Expect = 2.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 111 ccgggcgccggtggcgttgt 130 |||||||||||||||||||| Sbjct: 56283 ccgggcgccggtggcgttgt 56302
>dbj|AP005807.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBb0018H10 Length = 135879 Score = 40.1 bits (20), Expect = 2.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 111 ccgggcgccggtggcgttgt 130 |||||||||||||||||||| Sbjct: 93510 ccgggcgccggtggcgttgt 93529
>gb|AC104742.9| Mus musculus chromosome 5, clone RP24-334A12, complete sequence Length = 117378 Score = 40.1 bits (20), Expect = 2.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 47 aggcagtgtaggcctggttg 66 |||||||||||||||||||| Sbjct: 58723 aggcagtgtaggcctggttg 58704
>gb|BT015225.1| Drosophila melanogaster RE23320 full insert cDNA Length = 4024 Score = 38.2 bits (19), Expect = 8.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 57 ggcctggttgtaggaggag 75 ||||||||||||||||||| Sbjct: 1432 ggcctggttgtaggaggag 1450
>gb|AC111097.10| Mus musculus chromosome 3, clone RP23-174G7, complete sequence Length = 206043 Score = 38.2 bits (19), Expect = 8.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 40 tacagggaggcagtgtagg 58 ||||||||||||||||||| Sbjct: 191051 tacagggaggcagtgtagg 191033
>gb|BT011079.1| Drosophila melanogaster SD01102 full insert cDNA Length = 4108 Score = 38.2 bits (19), Expect = 8.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 57 ggcctggttgtaggaggag 75 ||||||||||||||||||| Sbjct: 1439 ggcctggttgtaggaggag 1457
>ref|XM_803554.1| Trypanosoma cruzi strain CL Brener hypothetical protein (Tc00.1047053506193.10) partial mRNA Length = 2295 Score = 38.2 bits (19), Expect = 8.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 36 tttttacagggaggcagtg 54 ||||||||||||||||||| Sbjct: 1095 tttttacagggaggcagtg 1113
>ref|XM_799787.1| Trypanosoma cruzi strain CL Brener hypothetical protein (Tc00.1047053503745.10) partial mRNA Length = 1252 Score = 38.2 bits (19), Expect = 8.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 36 tttttacagggaggcagtg 54 ||||||||||||||||||| Sbjct: 52 tttttacagggaggcagtg 70
>gb|AC098732.3| Mus musculus BAC clone RP23-3L20 from 3, complete sequence Length = 274210 Score = 38.2 bits (19), Expect = 8.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 40 tacagggaggcagtgtagg 58 ||||||||||||||||||| Sbjct: 212688 tacagggaggcagtgtagg 212706
>gb|AC119242.5| Mus musculus chromosome 6, clone RP24-229C13, complete sequence Length = 189108 Score = 38.2 bits (19), Expect = 8.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 25 tttccattttgtttttaca 43 ||||||||||||||||||| Sbjct: 55038 tttccattttgtttttaca 55056
>emb|AL590708.18| Human DNA sequence from clone RP11-395P17 on chromosome 9 Contains the PCSCL gene for likely ortholog of rat peroxisomal Ca-dependent solute carrier-like protein (KIAA1896), the PTGES2 gene for prostaglandin E synthase 2 (GBF1, GBF-1, C9orf15, FLJ14038), the LCN2 gene for lipocalin 2 (oncogene 24p3) (NGAL), the C9orf16 gene for chromosome 9 open reading frame 16 (MGC4639, EST00098, FLJ12823), the CIZ1 gene for Cip1-interacting zinc finger protein (LSFR1), the DNM1 gene for dynamin 1 (DNM), the GOLGA2 gene for golgi autoantigen, golgin subfamily a, 2 (GM130, MGC20672), the gene for a novel protein and seven CpG islands, complete sequence Length = 194056 Score = 38.2 bits (19), Expect = 8.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 26 ttccattttgtttttacag 44 ||||||||||||||||||| Sbjct: 101508 ttccattttgtttttacag 101490
>emb|AL109926.9|HSDJ543C6 Human DNA sequence from clone RP4-543C6 on chromosome 1p31.2-32.1 Contains part of the PDE4B gene for phosphodiesterase 4B, cAMP-specific (phosphodiesterase E4 dunce homolog, Drosophila), complete sequence Length = 114298 Score = 38.2 bits (19), Expect = 8.1 Identities = 22/23 (95%) Strand = Plus / Minus Query: 25 tttccattttgtttttacaggga 47 |||||| |||||||||||||||| Sbjct: 30027 tttccaatttgtttttacaggga 30005
>emb|AJ494863.1|BCI494863 Bacillus circulans btrW, btrV, btrU, btrR and btrN genes Length = 6271 Score = 38.2 bits (19), Expect = 8.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 32 tttgtttttacagggaggc 50 ||||||||||||||||||| Sbjct: 2221 tttgtttttacagggaggc 2203
>gb|AC164171.5| Mus musculus 10 BAC RP24-574G7 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 147660 Score = 38.2 bits (19), Expect = 8.1 Identities = 21/22 (95%) Strand = Plus / Plus Query: 15 aaaaataaantttccattttgt 36 ||||||||| |||||||||||| Sbjct: 70001 aaaaataaaatttccattttgt 70022
>gb|AC087481.9| Homo sapiens chromosome 15, clone RP11-540B6, complete sequence Length = 179400 Score = 38.2 bits (19), Expect = 8.1 Identities = 24/26 (92%) Strand = Plus / Plus Query: 16 aaaataaantttccattttgttttta 41 |||||||| ||| ||||||||||||| Sbjct: 158456 aaaataaaatttgcattttgttttta 158481
>gb|AC010010.6| Drosophila melanogaster 3L BAC RP98-13F6 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 167977 Score = 38.2 bits (19), Expect = 8.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 57 ggcctggttgtaggaggag 75 ||||||||||||||||||| Sbjct: 125531 ggcctggttgtaggaggag 125549
>ref|NM_167833.1| Drosophila melanogaster CG1233-RA, transcript variant A (CG1233), mRNA Length = 4011 Score = 38.2 bits (19), Expect = 8.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 57 ggcctggttgtaggaggag 75 ||||||||||||||||||| Sbjct: 1438 ggcctggttgtaggaggag 1456
>ref|NM_138190.1| Drosophila melanogaster CG1233-RB, transcript variant B (CG1233), mRNA Length = 4005 Score = 38.2 bits (19), Expect = 8.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 57 ggcctggttgtaggaggag 75 ||||||||||||||||||| Sbjct: 1432 ggcctggttgtaggaggag 1450
>gb|AF492836.1| Lolium perenne putative sucrose:sucrose 1-fructosyltransferase mRNA, complete cds Length = 2508 Score = 38.2 bits (19), Expect = 8.1 Identities = 37/44 (84%) Strand = Plus / Minus Query: 124 gcgttgttgaanaggtataccccagcnttgncgtagatggcctc 167 ||||||||||| ||||| ||||| || | ||||||||||||| Sbjct: 1897 gcgttgttgaacaggtacacccctgccgcggcgtagatggcctc 1854
>dbj|AK137924.1| Mus musculus 16 days neonate thymus cDNA, RIKEN full-length enriched library, clone:A130039P07 product:unclassifiable, full insert sequence Length = 5926 Score = 38.2 bits (19), Expect = 8.1 Identities = 21/22 (95%) Strand = Plus / Minus Query: 15 aaaaataaantttccattttgt 36 ||||||||| |||||||||||| Sbjct: 2549 aaaaataaaatttccattttgt 2528
>gb|AC090599.4| Homo sapiens chromosome 11, clone RP11-674E24, complete sequence Length = 165287 Score = 38.2 bits (19), Expect = 8.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 25 tttccattttgtttttaca 43 ||||||||||||||||||| Sbjct: 73491 tttccattttgtttttaca 73509
>emb|CR385251.1| Gallus gallus finished cDNA, clone ChEST551b8 Length = 1290 Score = 38.2 bits (19), Expect = 8.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 25 tttccattttgtttttaca 43 ||||||||||||||||||| Sbjct: 1019 tttccattttgtttttaca 1001
>gb|AC152959.2| Mus musculus 6 BAC RP23-78B5 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 206857 Score = 38.2 bits (19), Expect = 8.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 25 tttccattttgtttttaca 43 ||||||||||||||||||| Sbjct: 194188 tttccattttgtttttaca 194206
>dbj|AK018200.1| Mus musculus adult male medulla oblongata cDNA, RIKEN full-length enriched library, clone:6330419E04 product:unclassifiable, full insert sequence Length = 1263 Score = 38.2 bits (19), Expect = 8.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 25 tttccattttgtttttaca 43 ||||||||||||||||||| Sbjct: 1127 tttccattttgtttttaca 1109
>gb|AC008450.5|AC008450 Homo sapiens chromosome 5 clone CTC-343F10, complete sequence Length = 92949 Score = 38.2 bits (19), Expect = 8.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 25 tttccattttgtttttaca 43 ||||||||||||||||||| Sbjct: 46008 tttccattttgtttttaca 46026
>dbj|AB097196.1| Bacillus circulans butirosin-biosynthetic gene cluster (orf1, btrR1, btrU, btrR2, btrT, btrS, btrN, btrM, btrL, btrA, btrB, btrC, btrD, btrE, btrF, btrG, btrH, btrI, btrJ, btrK, btrO, btrP, btrV, btrQ, btrW, btrX), complete and partial cds Length = 29033 Score = 38.2 bits (19), Expect = 8.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 32 tttgtttttacagggaggc 50 ||||||||||||||||||| Sbjct: 2202 tttgtttttacagggaggc 2184
>gb|AC079227.12| Homo sapiens BAC clone RP11-80B23 from 4, complete sequence Length = 181942 Score = 38.2 bits (19), Expect = 8.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 25 tttccattttgtttttaca 43 ||||||||||||||||||| Sbjct: 18999 tttccattttgtttttaca 19017
>dbj|AB159786.1| Triticum aestivum 1-SST gene for sucrose:sucrose 1-fructosyltransferase, complete cds Length = 3326 Score = 38.2 bits (19), Expect = 8.1 Identities = 27/30 (90%) Strand = Plus / Minus Query: 117 gccggtggcgttgttgaanaggtatacccc 146 |||||||||||||||||| | ||| ||||| Sbjct: 3233 gccggtggcgttgttgaacatgtagacccc 3204
>dbj|AB125218.1| Lolium perenne mRNA for putative fructosyltransferase2, complete cds Length = 2462 Score = 38.2 bits (19), Expect = 8.1 Identities = 37/44 (84%) Strand = Plus / Minus Query: 124 gcgttgttgaanaggtataccccagcnttgncgtagatggcctc 167 ||||||||||| ||||| ||||| || | ||||||||||||| Sbjct: 1882 gcgttgttgaacaggtacacccctgccgcggcgtagatggcctc 1839
>dbj|AB029888.1| Triticum aestivum 1-SST mRNA for sucrose:sucrose 1-fructosytransferase, complete cds Length = 2330 Score = 38.2 bits (19), Expect = 8.1 Identities = 27/30 (90%) Strand = Plus / Minus Query: 117 gccggtggcgttgttgaanaggtatacccc 146 |||||||||||||||||| | ||| ||||| Sbjct: 1951 gccggtggcgttgttgaacatgtagacccc 1922
>gb|AC004460.1|AC004460 Homo sapiens PAC clone RP5-1086D14, complete sequence Length = 113803 Score = 38.2 bits (19), Expect = 8.1 Identities = 24/26 (92%) Strand = Plus / Minus Query: 16 aaaataaantttccattttgttttta 41 |||||||| ||| ||||||||||||| Sbjct: 86725 aaaataaaatttgcattttgttttta 86700
>gb|AE003468.3| Drosophila melanogaster chromosome 3L, section 2 of 83 of the complete sequence Length = 307657 Score = 38.2 bits (19), Expect = 8.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 57 ggcctggttgtaggaggag 75 ||||||||||||||||||| Sbjct: 43127 ggcctggttgtaggaggag 43145
>dbj|AP000904.6| Homo sapiens genomic DNA, chromosome 11 clone:RP11-702B10, complete sequence Length = 175904 Score = 38.2 bits (19), Expect = 8.1 Identities = 21/22 (95%) Strand = Plus / Minus Query: 20 taaantttccattttgttttta 41 |||| ||||||||||||||||| Sbjct: 29385 taaactttccattttgttttta 29364
>dbj|AP001978.5| Homo sapiens genomic DNA, chromosome 11 clone:RP11-258O13, complete sequence Length = 161602 Score = 38.2 bits (19), Expect = 8.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 26 ttccattttgtttttacag 44 ||||||||||||||||||| Sbjct: 72111 ttccattttgtttttacag 72093
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 38.2 bits (19), Expect = 8.1 Identities = 22/23 (95%) Strand = Plus / Plus Query: 100 gtggtggtgacccgggcgccggt 122 |||||||||| |||||||||||| Sbjct: 1065982 gtggtggtgatccgggcgccggt 1066004 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,644,011 Number of Sequences: 3902068 Number of extensions: 1644011 Number of successful extensions: 133883 Number of sequences better than 10.0: 76 Number of HSP's better than 10.0 without gapping: 76 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 133242 Number of HSP's gapped (non-prelim): 633 length of query: 167 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 145 effective length of database: 17,147,199,772 effective search space: 2486343966940 effective search space used: 2486343966940 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)