ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal32m24
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SYFB_PARUW (Q6MEA6) Phenylalanyl-tRNA synthetase beta chain (EC ... 30 6.2
2APLP2_HUMAN (Q06481) Amyloid-like protein 2 precursor (Amyloid p... 30 6.2
3APLP2_RAT (P15943) Amyloid-like protein 2 precursor (Sperm membr... 30 6.2

>SYFB_PARUW (Q6MEA6) Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)|
           (Phenylalanine--tRNA ligase beta chain) (PheRS)
          Length = 799

 Score = 30.0 bits (66), Expect = 6.2
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = +3

Query: 135 CLGCRNLHVSTMPDWLTACLSTNGVSCISDSQHGENWVKLVSGLP 269
           C   +N+ V   PDWL A +  +G+  +++     N+V L  G P
Sbjct: 220 CRVIKNVKVGASPDWLKAKIEKSGLRSVNNIVDVTNYVLLEMGHP 264



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>APLP2_HUMAN (Q06481) Amyloid-like protein 2 precursor (Amyloid protein homolog)|
           (APPH) (CDEI box-binding protein) (CDEBP)
          Length = 763

 Score = 30.0 bits (66), Expect = 6.2
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -3

Query: 540 FDYDDSGLPLCQVMVPRPSSPTGCVDAVFITEAD 439
           F+ +D  + +C+ M+P    PT  VD  F T AD
Sbjct: 350 FESEDYCMAVCKAMIPPTPLPTNDVDVYFETSAD 383



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>APLP2_RAT (P15943) Amyloid-like protein 2 precursor (Sperm membrane protein|
           YWK-II)
          Length = 765

 Score = 30.0 bits (66), Expect = 6.2
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -3

Query: 540 FDYDDSGLPLCQVMVPRPSSPTGCVDAVFITEAD 439
           F+ +D  + +C+ M+P    PT  VD  F T AD
Sbjct: 352 FESEDYCMAVCKTMIPPTPLPTNDVDVYFETSAD 385


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 99,085,381
Number of Sequences: 219361
Number of extensions: 2143944
Number of successful extensions: 4807
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4694
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4805
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6143359464
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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