Clone Information

BLAST Search Result

Clone Name	rbaal32m24
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	dbj\|AP008207.1\| Oryza sativa (japonica cultivar-group) genomic D...	125	2e-25
2	dbj\|AP002972.3\| Oryza sativa (japonica cultivar-group) genomic D...	125	2e-25
3	dbj\|AK073172.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	125	2e-25
4	ref\|NM_191136.1\| Oryza sativa (japonica cultivar-group), predic...	100	1e-17
5	gb\|AY112268.1\| Zea mays CL10657_1 mRNA sequence	82	3e-12
6	emb\|AL928857.15\| Mouse DNA sequence from clone RP24-499A8 on chr...	46	0.14
7	gb\|AC144740.3\| Oryza sativa (japonica cultivar-group) chromosome...	42	2.2
8	emb\|BX927156.1\| Corynebacterium glutamicum ATCC 13032, IS finger...	42	2.2
9	emb\|AL662930.29\| Mouse DNA sequence from clone RP23-212B18 on ch...	42	2.2
10	dbj\|AP003074.2\| Oryza sativa (japonica cultivar-group) genomic D...	42	2.2
11	gb\|AC020807.2\| Mus musculus chromosome 18 clone RG-MBAC_225G20, ...	42	2.2
12	gb\|AC099024.1\| Drosophila melanogaster, chromosome 2R, region 52...	42	2.2
13	gb\|AC099005.1\| Drosophila melanogaster, chromosome 2R, region 52...	42	2.2
14	gb\|AC091750.1\|AC091750 Mus musculus chromosome 18 clone unknown,...	42	2.2
15	dbj\|AP008211.1\| Oryza sativa (japonica cultivar-group) genomic D...	42	2.2
16	dbj\|BA000036.3\| Corynebacterium glutamicum ATCC 13032 DNA, compl...	42	2.2
17	dbj\|AP003196.3\| Oryza sativa (japonica cultivar-group) genomic D...	42	2.2
18	gb\|AC012462.5\| Homo sapiens BAC clone RP11-566P21 from 2, comple...	42	2.2
19	dbj\|AK119495.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	42	2.2
20	dbj\|AK071990.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	42	2.2
21	emb\|CT485616.11\| Mouse DNA sequence from clone RP23-14H16 on chr...	42	2.2
22	gb\|AE003809.3\| Drosophila melanogaster chromosome 2R, section 41...	42	2.2
23	gb\|AC005474.1\|AC005474 Drosophila melanogaster, chromosome 2R, r...	42	2.2
24	gb\|AC157656.3\| Mus musculus BAC clone RP23-406A5 from chromosome...	42	2.2
25	gb\|AC090534.10\| Mus musculus Strain C57BL6/J chromosome 18 BAC, ...	42	2.2
26	gb\|AC160122.2\| Mus musculus BAC clone RP23-390G1 from chromosome...	42	2.2
27	gb\|DP000013.1\| Otolemur garnettii target 1 genomic scaffold	40	8.9
28	gb\|AC125021.12\| Mus musculus chromosome 1, clone RP24-212P5, com...	40	8.9
29	gb\|AC116573.7\| Mus musculus BAC clone RP23-114E15 from chromosom...	40	8.9
30	gb\|AC132140.3\| Mus musculus BAC clone RP23-82C19 from chromosome...	40	8.9
31	emb\|CR759732.9\| Zebrafish DNA sequence from clone DKEY-183E23 in...	40	8.9
32	gb\|AC110245.10\| Mus musculus chromosome 3, clone RP23-251B16, co...	40	8.9
33	gb\|AC141323.9\| Medicago truncatula clone mth2-6a23, complete seq...	40	8.9
34	gb\|AC149805.12\| Medicago truncatula clone mth2-146o17, complete ...	40	8.9
35	gb\|AC155718.4\| Mus musculus 10 BAC RP24-217J7 (Roswell Park Canc...	40	8.9
36	emb\|AL136452.7\| Human DNA sequence from clone RP1-186E20 on chro...	40	8.9
37	emb\|BX323998.7\| Zebrafish DNA sequence from clone DKEYP-2C6 in l...	40	8.9
38	gb\|AC166147.8\| Medicago truncatula clone mth2-145g3, complete se...	40	8.9
39	gb\|AC132231.6\| Mus musculus BAC clone RP24-484D4 from chromosome...	40	8.9
40	gb\|AC161889.5\| Mus musculus 10 BAC RP23-361O18 (Roswell Park Can...	40	8.9
41	gb\|AC157651.3\| Mus musculus BAC clone RP24-363O21 from chromosom...	40	8.9
42	gb\|AC146532.3\| Otolemur garnettii clone CH256-151F13, complete s...	40	8.9
43	gb\|AC011513.2\|AC011513 Homo sapiens chromosome 19 clone LLNLF-11...	40	8.9
44	emb\|BX255885.5\| Zebrafish DNA sequence from clone CH211-213M12 i...	40	8.9
45	gb\|AC171179.2\| Gallus gallus BAC clone CH261-31A13 from chromoso...	40	8.9
46	gb\|AC170175.2\| Mus musculus chromosome 3, clone wi1-2236H9, comp...	40	8.9
47	gb\|AC158147.2\| Mus musculus BAC clone RP23-323H18 from chromosom...	40	8.9

>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  125 bits (63), Expect = 2e-25
 Identities = 123/143 (86%)
 Strand = Plus / Minus

                                                                            
Query: 265      tacctagcaggcacgaacctcagtaaacctgcttggggctggttcacagttgctggtaac 324
                |||||||||||| |||||||||| ||||| |||||||| ||| ||||| ||| |||||| 
Sbjct: 30864580 tacctagcaggcccgaacctcagcaaaccggcttggggttggctcacaattgttggtaag 30864521

                                                                            
Query: 325      tttcaacgatccaaagaggcatgatagtctcctcatgatgggcttgcgactggctactac 384
                |||||  ||||||||||| ||||||||||| |||||||||||||| || ||| |||  ||
Sbjct: 30864520 tttcagagatccaaagagacatgatagtcttctcatgatgggcttccggctgactatcac 30864461

                                       
Query: 385      ttcaaatgacacaacatccttcc 407
                ||| || |||||||| |||||||
Sbjct: 30864460 ttccaacgacacaacgtccttcc 30864438



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 53/61 (86%)
 Strand = Plus / Minus

                                                                            
Query: 486      ttggcctcggtaccataacttgacaaagaggtaaaccgctgtcatcgtaatcaaactcca 545
                ||||||| |||| ||| ||||||||||| |||||||| || || |||||||||| |||||
Sbjct: 30864359 ttggcctgggtaacattacttgacaaaggggtaaaccactatcttcgtaatcaagctcca 30864300

                 
Query: 546      t 546
                |
Sbjct: 30864299 t 30864299



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 42/49 (85%)
 Strand = Plus / Minus

                                                                 
Query: 65       caatcggcacattcacaactctaaactctcttaactccctatgcacaca 113
                ||||| |||||| |||| ||||| ||||||  ||||| |||||||||||
Sbjct: 30864774 caatccgcacatccacatctctacactctccaaactcactatgcacaca 30864726



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                            
Query: 163     ccacgatgcctgactggctgactgcctgc 191
               ||||||||||||||||||||  |||||||
Sbjct: 8018761 ccacgatgcctgactggctgggtgcctgc 8018733

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>dbj|AP002972.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0638D12
          Length = 161277

 Score =  125 bits (63), Expect = 2e-25
 Identities = 123/143 (86%)
 Strand = Plus / Minus

                                                                         
Query: 265   tacctagcaggcacgaacctcagtaaacctgcttggggctggttcacagttgctggtaac 324
             |||||||||||| |||||||||| ||||| |||||||| ||| ||||| ||| |||||| 
Sbjct: 64947 tacctagcaggcccgaacctcagcaaaccggcttggggttggctcacaattgttggtaag 64888

                                                                         
Query: 325   tttcaacgatccaaagaggcatgatagtctcctcatgatgggcttgcgactggctactac 384
             |||||  ||||||||||| ||||||||||| |||||||||||||| || ||| |||  ||
Sbjct: 64887 tttcagagatccaaagagacatgatagtcttctcatgatgggcttccggctgactatcac 64828

                                    
Query: 385   ttcaaatgacacaacatccttcc 407
             ||| || |||||||| |||||||
Sbjct: 64827 ttccaacgacacaacgtccttcc 64805



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 53/61 (86%)
 Strand = Plus / Minus

                                                                         
Query: 486   ttggcctcggtaccataacttgacaaagaggtaaaccgctgtcatcgtaatcaaactcca 545
             ||||||| |||| ||| ||||||||||| |||||||| || || |||||||||| |||||
Sbjct: 64726 ttggcctgggtaacattacttgacaaaggggtaaaccactatcttcgtaatcaagctcca 64667

              
Query: 546   t 546
             |
Sbjct: 64666 t 64666



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 42/49 (85%)
 Strand = Plus / Minus

                                                              
Query: 65    caatcggcacattcacaactctaaactctcttaactccctatgcacaca 113
             ||||| |||||| |||| ||||| ||||||  ||||| |||||||||||
Sbjct: 65141 caatccgcacatccacatctctacactctccaaactcactatgcacaca 65093

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>dbj|AK073172.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033022G13, full
            insert sequence
          Length = 1471

 Score =  125 bits (63), Expect = 2e-25
 Identities = 123/143 (86%)
 Strand = Plus / Minus

                                                                        
Query: 265  tacctagcaggcacgaacctcagtaaacctgcttggggctggttcacagttgctggtaac 324
            |||||||||||| |||||||||| ||||| |||||||| ||| ||||| ||| |||||| 
Sbjct: 1191 tacctagcaggcccgaacctcagcaaaccggcttggggttggctcacaattgttggtaag 1132

                                                                        
Query: 325  tttcaacgatccaaagaggcatgatagtctcctcatgatgggcttgcgactggctactac 384
            |||||  ||||||||||| ||||||||||| |||||||||||||| || ||| |||  ||
Sbjct: 1131 tttcagagatccaaagagacatgatagtcttctcatgatgggcttccggctgactatcac 1072

                                   
Query: 385  ttcaaatgacacaacatccttcc 407
            ||| || |||||||| |||||||
Sbjct: 1071 ttccaacgacacaacgtccttcc 1049



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 53/61 (86%)
 Strand = Plus / Minus

                                                                       
Query: 486 ttggcctcggtaccataacttgacaaagaggtaaaccgctgtcatcgtaatcaaactcca 545
           ||||||| |||| ||| ||||||||||| |||||||| || || |||||||||| |||||
Sbjct: 970 ttggcctgggtaacattacttgacaaaggggtaaaccactatcttcgtaatcaagctcca 911

            
Query: 546 t 546
           |
Sbjct: 910 t 910



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 42/49 (85%)
 Strand = Plus / Minus

                                                             
Query: 65   caatcggcacattcacaactctaaactctcttaactccctatgcacaca 113
            ||||| |||||| |||| ||||| ||||||  ||||| |||||||||||
Sbjct: 1385 caatccgcacatccacatctctacactctccaaactcactatgcacaca 1337

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>ref|NM_191136.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1392

 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 107/126 (84%)
 Strand = Plus / Minus

                                                                        
Query: 282  cctcagtaaacctgcttggggctggttcacagttgctggtaactttcaacgatccaaaga 341
            |||||| ||||| |||||||| ||| ||||| ||| |||||| |||||  ||||||||||
Sbjct: 1012 cctcagcaaaccggcttggggttggctcacaattgttggtaagtttcagagatccaaaga 953

                                                                        
Query: 342  ggcatgatagtctcctcatgatgggcttgcgactggctactacttcaaatgacacaacat 401
            | ||||||||||| |||||||||||||| || ||| |||  ||||| || |||||||| |
Sbjct: 952  gacatgatagtcttctcatgatgggcttccggctgactatcacttccaacgacacaacgt 893

                  
Query: 402  ccttcc 407
            ||||||
Sbjct: 892  ccttcc 887



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 53/61 (86%)
 Strand = Plus / Minus

                                                                       
Query: 486 ttggcctcggtaccataacttgacaaagaggtaaaccgctgtcatcgtaatcaaactcca 545
           ||||||| |||| ||| ||||||||||| |||||||| || || |||||||||| |||||
Sbjct: 808 ttggcctgggtaacattacttgacaaaggggtaaaccactatcttcgtaatcaagctcca 749

            
Query: 546 t 546
           |
Sbjct: 748 t 748

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>gb|AY112268.1| Zea mays CL10657_1 mRNA sequence
          Length = 543

 Score = 81.8 bits (41), Expect = 3e-12
 Identities = 156/193 (80%), Gaps = 6/193 (3%)
 Strand = Plus / Plus

                                                                       
Query: 263 cctacctagcaggcacgaacctcagtaaacctgcttggggctggttcacagttgctg--- 319
           |||||||||||||| ||||||||||| |||| |||||  ||||| ||||||||||||   
Sbjct: 253 cctacctagcaggcgcgaacctcagtgaaccggcttgaagctggctcacagttgctgtta 312

                                                                       
Query: 320 gtaactttcaacgatccaaagaggcatgatagtctcctcatgatgggcttgcgactggct 379
            ||| ||| |  || ||||||||||| || | |||||||||||||||  ||||| |||  
Sbjct: 313 ctaagtttgagggagccaaagaggcaggacaatctcctcatgatgggactgcgagtgg-- 370

                                                                       
Query: 380 actacttcaaatgacacaacatccttcccagtatcaatgtatgcatcgtagccctccaga 439
            ||||||| || |||||  |||| ||||  ||| |||| || | ||| |||||||| |||
Sbjct: 371 -ctacttccaacgacaccgcatctttcctggtaccaatataagtatcatagccctcaaga 429

                        
Query: 440 tctgcttctgtta 452
           |||||||||||||
Sbjct: 430 tctgcttctgtta 442

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>emb|AL928857.15| Mouse DNA sequence from clone RP24-499A8 on chromosome 11 Contains the
             5' end of the Gemin5 gene for gem (nuclear organelle)
             associated protein 5,  a novel gene, a interferon gamma
             inducible protein (Ifi47) pseudogene, the Igtp gene for
             interferon gamma induced GTPase, the Gtpi-pending gene for
             interferon-g induced GTPase, a novel gene and one CpG
             island, complete sequence
          Length = 133633

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                            
Query: 169   tgcctgactggctgactgcctgcctatctac 199
             |||||||||| ||||||||||||||| ||||
Sbjct: 82768 tgcctgactgcctgactgcctgcctagctac 82798

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>gb|AC144740.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0075A10,
              complete sequence
          Length = 171101

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 265    tacctagcaggcacgaacctc 285
              |||||||||||||||||||||
Sbjct: 129963 tacctagcaggcacgaacctc 129983

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>emb|BX927156.1| Corynebacterium glutamicum ATCC 13032, IS fingerprint type 4-5, complete
              genome; segment 9/10
          Length = 349115

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 125    cggtggcgtttgccttggctg 145
              |||||||||||||||||||||
Sbjct: 281418 cggtggcgtttgccttggctg 281398

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>emb|AL662930.29| Mouse DNA sequence from clone RP23-212B18 on chromosome 11 Contains part
              of the gene for a novel protein (likely ortholog to homo
              sapiens FLJ38335), complete sequence
          Length = 198148

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 429    agccctccagatctgcttctg 449
              |||||||||||||||||||||
Sbjct: 142168 agccctccagatctgcttctg 142148

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>dbj|AP003074.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OSJNBa0004G10
          Length = 150379

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 163   ccacgatgcctgactggctgactgcctgc 191
             ||||||||||||||||||||  |||||||
Sbjct: 15412 ccacgatgcctgactggctgggtgcctgc 15384

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>gb|AC020807.2| Mus musculus chromosome 18 clone RG-MBAC_225G20, complete sequence
          Length = 81195

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 169  tgcctgactggctgactgcctgcct 193
            |||||||||| ||||||||||||||
Sbjct: 7537 tgcctgactgcctgactgcctgcct 7513

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>gb|AC099024.1| Drosophila melanogaster, chromosome 2R, region 52X-53A, BAC clone
             BACR04J01, complete sequence
          Length = 182560

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 173   tgactggctgactgcctgcct 193
             |||||||||||||||||||||
Sbjct: 22201 tgactggctgactgcctgcct 22181

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>gb|AC099005.1| Drosophila melanogaster, chromosome 2R, region 52B-52C, BAC clone
             BACR11I22, complete sequence
          Length = 173165

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 173   tgactggctgactgcctgcct 193
             |||||||||||||||||||||
Sbjct: 95877 tgactggctgactgcctgcct 95857

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>gb|AC091750.1|AC091750 Mus musculus chromosome 18 clone unknown, complete sequence
          Length = 81195

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 169  tgcctgactggctgactgcctgcct 193
            |||||||||| ||||||||||||||
Sbjct: 7537 tgcctgactgcctgactgcctgcct 7513

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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 265      tacctagcaggcacgaacctc 285
                |||||||||||||||||||||
Sbjct: 25888431 tacctagcaggcacgaacctc 25888451

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>dbj|BA000036.3| Corynebacterium glutamicum ATCC 13032 DNA, complete genome
          Length = 3309401

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 125     cggtggcgtttgccttggctg 145
               |||||||||||||||||||||
Sbjct: 3101698 cggtggcgtttgccttggctg 3101678

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>dbj|AP003196.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:B1008C01
          Length = 144141

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                           
Query: 163    ccacgatgcctgactggctgactgcctgc 191
              ||||||||||||||||||||  |||||||
Sbjct: 125073 ccacgatgcctgactggctgggtgcctgc 125045

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>gb|AC012462.5| Homo sapiens BAC clone RP11-566P21 from 2, complete sequence
          Length = 143947

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 105   atgcacacaaagcttcttccc 125
             |||||||||||||||||||||
Sbjct: 56854 atgcacacaaagcttcttccc 56834

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>dbj|AK119495.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-134-D11, full
            insert sequence
          Length = 1524

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 265  tacctagcaggcacgaacctc 285
            |||||||||||||||||||||
Sbjct: 1277 tacctagcaggcacgaacctc 1257

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>dbj|AK071990.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013090B20, full
            insert sequence
          Length = 1613

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 265  tacctagcaggcacgaacctc 285
            |||||||||||||||||||||
Sbjct: 1284 tacctagcaggcacgaacctc 1264

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>emb|CT485616.11| Mouse DNA sequence from clone RP23-14H16 on chromosome 17, complete
             sequence
          Length = 163243

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 169   tgcctgactggctgactgcctgcct 193
             |||||||||| ||||||||||||||
Sbjct: 52616 tgcctgactgcctgactgcctgcct 52592

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>gb|AE003809.3| Drosophila melanogaster chromosome 2R, section 41 of 73 of the complete
             sequence
          Length = 262533

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 173   tgactggctgactgcctgcct 193
             |||||||||||||||||||||
Sbjct: 33769 tgactggctgactgcctgcct 33749

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>gb|AC005474.1|AC005474 Drosophila melanogaster, chromosome 2R, region 52C1-52C2, P1 clone
             DS08438, complete sequence
          Length = 74901

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 173   tgactggctgactgcctgcct 193
             |||||||||||||||||||||
Sbjct: 36133 tgactggctgactgcctgcct 36113

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>gb|AC157656.3| Mus musculus BAC clone RP23-406A5 from chromosome 13, complete sequence
          Length = 189500

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 169    tgcctgactggctgactgcctgcct 193
              |||||||||| ||||||||||||||
Sbjct: 170580 tgcctgactgcctgactgcctgcct 170556

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>gb|AC090534.10| Mus musculus Strain C57BL6/J chromosome 18 BAC, RP23-233F17, complete
             sequence
          Length = 176773

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 169   tgcctgactggctgactgcctgcct 193
             |||||||||| ||||||||||||||
Sbjct: 79744 tgcctgactgcctgactgcctgcct 79720

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>gb|AC160122.2| Mus musculus BAC clone RP23-390G1 from chromosome 13, complete sequence
          Length = 208856

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 169    tgcctgactggctgactgcctgcct 193
              |||||||||| ||||||||||||||
Sbjct: 146286 tgcctgactgcctgactgcctgcct 146310

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>gb|DP000013.1| Otolemur garnettii target 1 genomic scaffold
          Length = 1743090

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 237     gaaaattgggtaaagctagt 256
               ||||||||||||||||||||
Sbjct: 1689540 gaaaattgggtaaagctagt 1689521

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>gb|AC125021.12| Mus musculus chromosome 1, clone RP24-212P5, complete sequence
          Length = 174626

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 469   acatccagttggactgcttg 488
             ||||||||||||||||||||
Sbjct: 92585 acatccagttggactgcttg 92604

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>gb|AC116573.7| Mus musculus BAC clone RP23-114E15 from chromosome 6, complete sequence
          Length = 211910

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 572   gggatggaggctttggtgcc 591
             ||||||||||||||||||||
Sbjct: 10537 gggatggaggctttggtgcc 10556

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>gb|AC132140.3| Mus musculus BAC clone RP23-82C19 from chromosome 19, complete sequence
          Length = 278583

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 82     actctaaactctcttaactc 101
              ||||||||||||||||||||
Sbjct: 114216 actctaaactctcttaactc 114197

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>emb|CR759732.9| Zebrafish DNA sequence from clone DKEY-183E23 in linkage group 14,
              complete sequence
          Length = 225630

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 169    tgcctgactggctgactgcctgcc 192
              |||||||||| |||||||||||||
Sbjct: 210427 tgcctgactgcctgactgcctgcc 210404

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>gb|AC110245.10| Mus musculus chromosome 3, clone RP23-251B16, complete sequence
          Length = 241132

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 169   tgcctgactggctgactgcctgcc 192
             |||||||||| |||||||||||||
Sbjct: 16300 tgcctgactgcctgactgcctgcc 16323

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>gb|AC141323.9| Medicago truncatula clone mth2-6a23, complete sequence
          Length = 132894

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 432   cctccagatctgcttctgtt 451
             ||||||||||||||||||||
Sbjct: 36756 cctccagatctgcttctgtt 36737

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>gb|AC149805.12| Medicago truncatula clone mth2-146o17, complete sequence
          Length = 89758

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 432   cctccagatctgcttctgtt 451
             ||||||||||||||||||||
Sbjct: 68904 cctccagatctgcttctgtt 68885

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>gb|AC155718.4| Mus musculus 10 BAC RP24-217J7 (Roswell Park Cancer Institute
            (C57BL/6J Male) Mouse BAC Library) complete sequence
          Length = 155643

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 433  ctccagatctgcttctgtta 452
            ||||||||||||||||||||
Sbjct: 3801 ctccagatctgcttctgtta 3820

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>emb|AL136452.7| Human DNA sequence from clone RP1-186E20 on chromosome 10 Contains an
             ORM1-like (S. cerevisiae) pseudogene and a novel gene,
             complete sequence
          Length = 147105

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 442   tgcttctgttatgaaaactg 461
             ||||||||||||||||||||
Sbjct: 78348 tgcttctgttatgaaaactg 78367

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>emb|BX323998.7| Zebrafish DNA sequence from clone DKEYP-2C6 in linkage group 14,
             complete sequence
          Length = 172349

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 169   tgcctgactggctgactgcctgcc 192
             |||||||||| |||||||||||||
Sbjct: 36498 tgcctgactgcctgactgcctgcc 36521

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>gb|AC166147.8| Medicago truncatula clone mth2-145g3, complete sequence
          Length = 126336

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 432  cctccagatctgcttctgtt 451
            ||||||||||||||||||||
Sbjct: 2667 cctccagatctgcttctgtt 2648

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>gb|AC132231.6| Mus musculus BAC clone RP24-484D4 from chromosome 1, complete sequence
          Length = 188905

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 181    tgactgcctgcctatctact 200
              ||||||||||||||||||||
Sbjct: 184676 tgactgcctgcctatctact 184657

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>gb|AC161889.5| Mus musculus 10 BAC RP23-361O18 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 228043

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 433    ctccagatctgcttctgtta 452
              ||||||||||||||||||||
Sbjct: 182590 ctccagatctgcttctgtta 182609

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>gb|AC157651.3| Mus musculus BAC clone RP24-363O21 from chromosome 6, complete sequence
          Length = 171141

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 572   gggatggaggctttggtgcc 591
             ||||||||||||||||||||
Sbjct: 10319 gggatggaggctttggtgcc 10300

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>gb|AC146532.3| Otolemur garnettii clone CH256-151F13, complete sequence
          Length = 197659

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 237    gaaaattgggtaaagctagt 256
              ||||||||||||||||||||
Sbjct: 144109 gaaaattgggtaaagctagt 144090

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>gb|AC011513.2|AC011513 Homo sapiens chromosome 19 clone LLNLF-112E5, complete sequence
          Length = 40520

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 171   cctgactggctgactgcctg 190
             ||||||||||||||||||||
Sbjct: 22984 cctgactggctgactgcctg 22965

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>emb|BX255885.5| Zebrafish DNA sequence from clone CH211-213M12 in linkage group 4,
             complete sequence
          Length = 134701

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 181   tgactgcctgcctatctact 200
             ||||||||||||||||||||
Sbjct: 94014 tgactgcctgcctatctact 93995

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>gb|AC171179.2| Gallus gallus BAC clone CH261-31A13 from chromosome ul, complete sequence
          Length = 247380

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 431    ccctccagatctgcttctgt 450
              ||||||||||||||||||||
Sbjct: 200564 ccctccagatctgcttctgt 200545

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>gb|AC170175.2| Mus musculus chromosome 3, clone wi1-2236H9, complete sequence
          Length = 39765

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 169   tgcctgactggctgactgcctgcc 192
             |||||||||| |||||||||||||
Sbjct: 23208 tgcctgactgcctgactgcctgcc 23185

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>gb|AC158147.2| Mus musculus BAC clone RP23-323H18 from chromosome 1, complete sequence
          Length = 197560

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 181    tgactgcctgcctatctact 200
              ||||||||||||||||||||
Sbjct: 166692 tgactgcctgcctatctact 166711


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,532,697
Number of Sequences: 3902068
Number of extensions: 4532697
Number of successful extensions: 81104
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 80857
Number of HSP's gapped (non-prelim): 247
length of query: 650
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 627
effective length of database: 17,143,297,704
effective search space: 10748847660408
effective search space used: 10748847660408
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result