>VS06_ROTPY (Q06386) VP6 protein (Major capsid protein) (Major internal|
           structural protein)
          Length = 397

 Score = 28.9 bits (63), Expect = 3.3
 Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = +1

Query: 175 VFAINFN-I*LEEILVGATNLPPKRCILFPCHPPFIFDGIPGLVQQL 312
           + A NF+ I L   LV   N+ P    LFP  PPFIF    GL  ++
Sbjct: 280 IIARNFDTIRLSFQLVRPPNMTPAVANLFPQAPPFIFHATVGLTLRI 326

>PUNC_MOUSE (Q8BQC3) Putative neuronal cell adhesion molecule precursor|
          Length = 813

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 11/15 (73%), Positives = 11/15 (73%)
 Frame = +3

Query: 264 SSSLHL*WNPWPRTA 308
           SSSL L W PWPR A
Sbjct: 546 SSSLQLLWKPWPRLA 560

>PUNC_HUMAN (Q8IVU1) Putative neuronal cell adhesion molecule precursor|
          Length = 814

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 11/15 (73%), Positives = 11/15 (73%)
 Frame = +3

Query: 264 SSSLHL*WNPWPRTA 308
           SSSL L W PWPR A
Sbjct: 534 SSSLQLLWEPWPRLA 548

>BIS1_SCHPO (O59793) Stress response protein bis1|
          Length = 384

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 17/55 (30%), Positives = 23/55 (41%)
 Frame = +3

Query: 162 NLPPRIRHQLQHMTXRNPCRCHQSSSEALHTVPLSSSLHL*WNPWPRTAAPRPSP 326
           NL P  R  +     R+P     S S + HT   +S     W P PR  +  P+P
Sbjct: 328 NLTPAARRLVARSYLRSPLH-GSSPSASRHTALRTSIPKFSWTPTPRVKSTAPTP 381

>DPB2_CRYNE (Q5KEX9) DNA polymerase epsilon subunit B (EC 2.7.7.7) (DNA|
           polymerase II subunit B)
          Length = 541

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 5/40 (12%)
 Frame = +3

Query: 219 RCHQSSSEALHTVPLSSSLHL*W-----NPWPRTAAPRPS 323
           R   S +E L ++PL  S H  +     +PW  T  PRPS
Sbjct: 348 RGFNSLAELLQSIPLLHSSHFVFVPGPSDPWSSTTLPRPS 387


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,255,009
Number of Sequences: 219361
Number of extensions: 848668
Number of successful extensions: 2315
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2251
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2313
length of database: 80,573,946
effective HSP length: 87
effective length of database: 61,489,539
effective search space used: 1475748936
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)