ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal33b23
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY106321.1| Zea mays PCO088178 mRNA sequence 272 7e-70
2ref|NM_190383.1| Oryza sativa (japonica cultivar-group), predic... 266 4e-68
3dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 123 4e-25
4dbj|AP003230.4| Oryza sativa (japonica cultivar-group) genomic D... 123 4e-25
5gb|BC039276.1| Mus musculus pleckstrin homology domain containin... 42 1.1
6gb|AC124400.4| Mus musculus BAC clone RP24-357O21 from chromosom... 42 1.1
7gb|BC016134.1| Mus musculus pleckstrin homology domain containin... 42 1.1
8dbj|AK154634.1| Mus musculus NOD-derived CD11c +ve dendritic cel... 42 1.1
9dbj|AK033666.1| Mus musculus adult male cecum cDNA, RIKEN full-l... 42 1.1
10gb|AF089023.1|AF089023 Euphagus carolinus cytochrome b (cytb) ge... 42 1.1
11emb|AL732497.15| Mouse DNA sequence from clone RP23-130H14 on ch... 42 1.1
12ref|NM_175175.3| Mus musculus pleckstrin homology domain contain... 42 1.1
13emb|AL928738.8| Mouse DNA sequence from clone RP23-76M15 on chro... 42 1.1
14ref|NM_115487.3| Arabidopsis thaliana unknown protein AT3G56290 ... 40 4.5
15gb|AF030453.1| Homo sapiens chromosome 7 clone PAC 76h2 map 7q22... 40 4.5
16ref|XM_601826.2| PREDICTED: Bos taurus similar to type IV alpha ... 40 4.5
17ref|XM_363197.1| Magnaporthe grisea 70-15 hypothetical protein (... 40 4.5
18gb|AC005088.3| Homo sapiens BAC clone CTA-313A17 from 7, complet... 40 4.5
19gb|AC005998.3| Homo sapiens PAC clone RP4-622E21 from 7, complet... 40 4.5
20emb|AL359928.11| Human DNA sequence from clone RP11-80D19 on chr... 40 4.5
21gb|BC045562.1| Homo sapiens cDNA clone IMAGE:4815142 40 4.5
22gb|BC040199.1| Homo sapiens cDNA clone IMAGE:4816860 40 4.5
23gb|AC112673.7| Homo sapiens chromosome 8, clone RP11-212F11, com... 40 4.5
24gb|AY081675.1| Arabidopsis thaliana putative protein (At3g56290)... 40 4.5
25gb|AY062503.1| Arabidopsis thaliana putative protein (At3g56290;... 40 4.5
26gb|AY958432.1| Homo sapiens methionine sulfoxide reductase gene,... 40 4.5
27gb|AF151527.1|AF151527 Hyphantria cunea serpin gene, complete cds 40 4.5
28gb|AC125520.3| Mus musculus BAC clone RP24-281J17 from 8, comple... 40 4.5
29emb|AL928553.8| Mouse DNA sequence from clone RP23-312N5 on chro... 40 4.5 
>gb|AY106321.1| Zea mays PCO088178 mRNA sequence
          Length = 748

 Score =  272 bits (137), Expect = 7e-70
 Identities = 223/252 (88%)
 Strand = Plus / Minus

                                                                       
Query: 86  tatcttcctagattgtcaacttgccttggctcccctcttgtgtctttcttgcaaactttg 145
           ||||||||||| |||||||| ||||| |||||||| |||||||| |||||||| |  |||
Sbjct: 444 tatcttcctagcttgtcaacctgcctcggctccccccttgtgtccttcttgcagatcttg 385

                                                                       
Query: 146 caggtcttgtccacccaaccttcctccacgtattcgccatcaacttcaacatatgactng 205
           ||||||||||| |||||||| |||||||||||||  || || |||||||||||||||| |
Sbjct: 384 caggtcttgtcgacccaaccctcctccacgtattgcccgtcgacttcaacatatgacttg 325

                                                                       
Query: 206 aagaaatccttgtaggtgccaccaatcttcctccgaagcgctgcatactgttcccttgtc 265
           |||||||||| |||||||||||||||||||| || ||| ||| | ||||| ||||| |||
Sbjct: 324 aagaaatcctggtaggtgccaccaatcttccgcctaagtgctccgtactgctccctcgtc 265

                                                                       
Query: 266 atcctcccttcatctttgatggaatccctggcctcgtacagcagctccgcgtccttctcc 325
           ||||||||| || || || |||| ||||||||||||||||||||||| ||||||||||||
Sbjct: 264 atcctccctccacctctggtggactccctggcctcgtacagcagctcggcgtccttctcc 205

                       
Query: 326 gaccggacctgc 337
           ||||||||||||
Sbjct: 204 gaccggacctgc 193
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>ref|NM_190383.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 513

 Score =  266 bits (134), Expect = 4e-68
 Identities = 223/253 (88%)
 Strand = Plus / Minus

                                                                       
Query: 85  atatcttcctagattgtcaacttgccttggctcccctcttgtgtctttcttgcaaacttt 144
           |||||||||||| ||||| || ||||| || |||||||| ||||| ||||||||||||||
Sbjct: 447 atatcttcctagcttgtcgacctgcctgggttcccctctagtgtccttcttgcaaacttt 388

                                                                       
Query: 145 gcaggtcttgtccacccaaccttcctccacgtattcgccatcaacttcaacatatgactn 204
           ||||||||| ||||||||||||||||| |||||||| || ||||| || |||||||||| 
Sbjct: 387 gcaggtcttatccacccaaccttcctctacgtattccccgtcaacatccacatatgactt 328

                                                                       
Query: 205 gaagaaatccttgtaggtgccaccaatcttcctccgaagcgctgcatactgttcccttgt 264
           |||||||||||||||||||||||| |||||||||||||| ||| ||||||| ||| ||||
Sbjct: 327 gaagaaatccttgtaggtgccaccgatcttcctccgaagtgctccatactgctcctttgt 268

                                                                       
Query: 265 catcctcccttcatctttgatggaatccctggcctcgtacagcagctccgcgtccttctc 324
           |||||| ||| |||| ||  |||  || ||||| || ||||| |||||||||||||||||
Sbjct: 267 catccttcctccatcctttgtggcctctctggcttcatacagaagctccgcgtccttctc 208

                        
Query: 325 cgaccggacctgc 337
           |||||||||||||
Sbjct: 207 cgaccggacctgc 195
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  123 bits (62), Expect = 4e-25
 Identities = 95/106 (89%)
 Strand = Plus / Minus

                                                                            
Query: 85       atatcttcctagattgtcaacttgccttggctcccctcttgtgtctttcttgcaaacttt 144
                |||||||||||| ||||| || ||||| || |||||||| ||||| ||||||||||||||
Sbjct: 35169504 atatcttcctagcttgtcgacctgcctgggttcccctctagtgtccttcttgcaaacttt 35169445

                                                              
Query: 145      gcaggtcttgtccacccaaccttcctccacgtattcgccatcaact 190
                ||||||||| ||||||||||||||||| |||||||| || ||||||
Sbjct: 35169444 gcaggtcttatccacccaaccttcctctacgtattccccgtcaact 35169399



 Score = 91.7 bits (46), Expect = 1e-15
 Identities = 57/61 (93%)
 Strand = Plus / Minus

                                                                            
Query: 194      acatatgactngaagaaatccttgtaggtgccaccaatcttcctccgaagcgctgcatac 253
                |||||||||| |||||||||||||||||||||||| |||||||||||||| ||| |||||
Sbjct: 35169282 acatatgacttgaagaaatccttgtaggtgccaccgatcttcctccgaagtgctccatac 35169223

                 
Query: 254      t 254
                |
Sbjct: 35169222 t 35169222



 Score = 65.9 bits (33), Expect = 8e-08
 Identities = 42/45 (93%)
 Strand = Plus / Minus

                                                             
Query: 293      ctggcctcgtacagcagctccgcgtccttctccgaccggacctgc 337
                ||||| || ||||| ||||||||||||||||||||||||||||||
Sbjct: 35169049 ctggcttcatacagaagctccgcgtccttctccgaccggacctgc 35169005
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>dbj|AP003230.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0031D02
          Length = 183692

 Score =  123 bits (62), Expect = 4e-25
 Identities = 95/106 (89%)
 Strand = Plus / Minus

                                                                         
Query: 85    atatcttcctagattgtcaacttgccttggctcccctcttgtgtctttcttgcaaacttt 144
             |||||||||||| ||||| || ||||| || |||||||| ||||| ||||||||||||||
Sbjct: 48588 atatcttcctagcttgtcgacctgcctgggttcccctctagtgtccttcttgcaaacttt 48529

                                                           
Query: 145   gcaggtcttgtccacccaaccttcctccacgtattcgccatcaact 190
             ||||||||| ||||||||||||||||| |||||||| || ||||||
Sbjct: 48528 gcaggtcttatccacccaaccttcctctacgtattccccgtcaact 48483



 Score = 91.7 bits (46), Expect = 1e-15
 Identities = 57/61 (93%)
 Strand = Plus / Minus

                                                                         
Query: 194   acatatgactngaagaaatccttgtaggtgccaccaatcttcctccgaagcgctgcatac 253
             |||||||||| |||||||||||||||||||||||| |||||||||||||| ||| |||||
Sbjct: 48366 acatatgacttgaagaaatccttgtaggtgccaccgatcttcctccgaagtgctccatac 48307

              
Query: 254   t 254
             |
Sbjct: 48306 t 48306



 Score = 65.9 bits (33), Expect = 8e-08
 Identities = 42/45 (93%)
 Strand = Plus / Minus

                                                          
Query: 293   ctggcctcgtacagcagctccgcgtccttctccgaccggacctgc 337
             ||||| || ||||| ||||||||||||||||||||||||||||||
Sbjct: 48133 ctggcttcatacagaagctccgcgtccttctccgaccggacctgc 48089
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>gb|BC039276.1| Mus musculus pleckstrin homology domain containing, family F (with
           FYVE domain) member 2, mRNA (cDNA clone MGC:36376
           IMAGE:4987735), complete cds
          Length = 2892

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 271 cccttcatctttgatggaatc 291
           |||||||||||||||||||||
Sbjct: 474 cccttcatctttgatggaatc 454
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>gb|AC124400.4| Mus musculus BAC clone RP24-357O21 from chromosome 14, complete
             sequence
          Length = 191219

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 271   cccttcatctttgatggaatc 291
             |||||||||||||||||||||
Sbjct: 90782 cccttcatctttgatggaatc 90762
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>gb|BC016134.1| Mus musculus pleckstrin homology domain containing, family F (with
           FYVE domain) member 2, mRNA (cDNA clone MGC:28979
           IMAGE:4503757), complete cds
          Length = 2897

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 271 cccttcatctttgatggaatc 291
           |||||||||||||||||||||
Sbjct: 464 cccttcatctttgatggaatc 444
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>dbj|AK154634.1| Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN
           full-length enriched library, clone:F630101M03
           product:pleckstrin homology domain containing, family F
           (with FYVE domain) member 2, full insert sequence
          Length = 1964

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 271 cccttcatctttgatggaatc 291
           |||||||||||||||||||||
Sbjct: 514 cccttcatctttgatggaatc 494
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>dbj|AK033666.1| Mus musculus adult male cecum cDNA, RIKEN full-length enriched
           library, clone:9130213H04 product:CDNA FLJ13187 FIS,
           CLONE NT2RP3004242, WEAKLY SIMILAR TO PUTATIVE RHO/RAC
           GUANINE NUCLEOTIDE EXCHANGE FACTOR (HYPOTHETICAL 27.8
           KDA PROTEIN) homolog [Homo sapiens], full insert
           sequence
          Length = 2228

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 271 cccttcatctttgatggaatc 291
           |||||||||||||||||||||
Sbjct: 517 cccttcatctttgatggaatc 497
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>gb|AF089023.1|AF089023 Euphagus carolinus cytochrome b (cytb) gene, mitochondrial gene
           encoding mitochondrial protein, partial cds
          Length = 888

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 151 cttgtccacccaaccttcctccacg 175
           |||||||||| ||||||||||||||
Sbjct: 463 cttgtccacctaaccttcctccacg 487
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>emb|AL732497.15| Mouse DNA sequence from clone RP23-130H14 on chromosome 4, complete
             sequence
          Length = 208663

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 271   cccttcatctttgatggaatc 291
             |||||||||||||||||||||
Sbjct: 86004 cccttcatctttgatggaatc 86024
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>ref|NM_175175.3| Mus musculus pleckstrin homology domain containing, family F (with
           FYVE domain) member 2 (Plekhf2), mRNA
          Length = 2897

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 271 cccttcatctttgatggaatc 291
           |||||||||||||||||||||
Sbjct: 464 cccttcatctttgatggaatc 444
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>emb|AL928738.8| Mouse DNA sequence from clone RP23-76M15 on chromosome 4, complete
             sequence
          Length = 188568

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 259   ccttgtcatcctcccttcatctttg 283
             ||||||||||||| |||||||||||
Sbjct: 63456 ccttgtcatcctctcttcatctttg 63432
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>ref|NM_115487.3| Arabidopsis thaliana unknown protein AT3G56290 mRNA, complete cds
          Length = 753

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 38/44 (86%)
 Strand = Plus / Minus

                                                       
Query: 152 ttgtccacccaaccttcctccacgtattcgccatcaacttcaac 195
           ||||||||||| || |||||||| ||||  ||||| ||||||||
Sbjct: 416 ttgtccacccatccctcctccacatattgcccatccacttcaac 373
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>gb|AF030453.1| Homo sapiens chromosome 7 clone PAC 76h2 map 7q22, complete sequence
          Length = 125108

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 157   cacccaaccttcctccacgt 176
             ||||||||||||||||||||
Sbjct: 17040 cacccaaccttcctccacgt 17021
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>ref|XM_601826.2| PREDICTED: Bos taurus similar to type IV alpha 6 collagen isoform A
            precursor (LOC523526), mRNA
          Length = 4990

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 281  ttgatggaatccctggcctc 300
            ||||||||||||||||||||
Sbjct: 4046 ttgatggaatccctggcctc 4065
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>ref|XM_363197.1| Magnaporthe grisea 70-15 hypothetical protein (MG08781.4) partial
           cds
          Length = 567

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 292 cctggcctcgtacagcagct 311
           ||||||||||||||||||||
Sbjct: 204 cctggcctcgtacagcagct 223
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>gb|AC005088.3| Homo sapiens BAC clone CTA-313A17 from 7, complete sequence
          Length = 158663

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 157   cacccaaccttcctccacgt 176
             ||||||||||||||||||||
Sbjct: 51969 cacccaaccttcctccacgt 51950
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>gb|AC005998.3| Homo sapiens PAC clone RP4-622E21 from 7, complete sequence
          Length = 96556

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 116   tcccctcttgtgtctttctt 135
             ||||||||||||||||||||
Sbjct: 25599 tcccctcttgtgtctttctt 25618
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>emb|AL359928.11| Human DNA sequence from clone RP11-80D19 on chromosome 1, complete
             sequence
          Length = 63855

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 84    tatatcttcctagattgtcaactt 107
             |||||||||||| |||||||||||
Sbjct: 11370 tatatcttcctaaattgtcaactt 11393
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>gb|BC045562.1| Homo sapiens cDNA clone IMAGE:4815142
          Length = 3092

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 157  cacccaaccttcctccacgt 176
            ||||||||||||||||||||
Sbjct: 1874 cacccaaccttcctccacgt 1855
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>gb|BC040199.1| Homo sapiens cDNA clone IMAGE:4816860
          Length = 3212

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 157  cacccaaccttcctccacgt 176
            ||||||||||||||||||||
Sbjct: 1991 cacccaaccttcctccacgt 1972
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>gb|AC112673.7| Homo sapiens chromosome 8, clone RP11-212F11, complete sequence
          Length = 167547

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 130   tttcttgcaaactttgcagg 149
             ||||||||||||||||||||
Sbjct: 18565 tttcttgcaaactttgcagg 18546
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>gb|AY081675.1| Arabidopsis thaliana putative protein (At3g56290) mRNA, complete
           cds
          Length = 655

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 38/44 (86%)
 Strand = Plus / Minus

                                                       
Query: 152 ttgtccacccaaccttcctccacgtattcgccatcaacttcaac 195
           ||||||||||| || |||||||| ||||  ||||| ||||||||
Sbjct: 389 ttgtccacccatccctcctccacatattgcccatccacttcaac 346
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>gb|AY062503.1| Arabidopsis thaliana putative protein (At3g56290; F18O21_250) mRNA,
           complete cds
          Length = 744

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 38/44 (86%)
 Strand = Plus / Minus

                                                       
Query: 152 ttgtccacccaaccttcctccacgtattcgccatcaacttcaac 195
           ||||||||||| || |||||||| ||||  ||||| ||||||||
Sbjct: 416 ttgtccacccatccctcctccacatattgcccatccacttcaac 373
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>gb|AY958432.1| Homo sapiens methionine sulfoxide reductase gene, complete cds,
              alternatively spliced
          Length = 379048

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 130    tttcttgcaaactttgcagg 149
              ||||||||||||||||||||
Sbjct: 364908 tttcttgcaaactttgcagg 364927
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>gb|AF151527.1|AF151527 Hyphantria cunea serpin gene, complete cds
          Length = 18665

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 83   atatatcttcctagattgtcaact 106
            ||||||||| ||||||||||||||
Sbjct: 7250 atatatcttgctagattgtcaact 7227
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>gb|AC125520.3| Mus musculus BAC clone RP24-281J17 from 8, complete sequence
          Length = 178227

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 277    atctttgatggaatccctgg 296
              ||||||||||||||||||||
Sbjct: 119255 atctttgatggaatccctgg 119236
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>emb|AL928553.8| Mouse DNA sequence from clone RP23-312N5 on chromosome 2, complete
             sequence
          Length = 148202

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 266   atcctcccttcatctttgat 285
             ||||||||||||||||||||
Sbjct: 28895 atcctcccttcatctttgat 28876


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,645,592
Number of Sequences: 3902068
Number of extensions: 2645592
Number of successful extensions: 49815
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 49756
Number of HSP's gapped (non-prelim): 59
length of query: 337
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 315
effective length of database: 17,147,199,772
effective search space: 5401367928180
effective search space used: 5401367928180
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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