ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal33b22
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|AJ245479.1|BNA245479 Brassica napus subsp. napus Sll3, slk, ... 42 0.47
2dbj|AB190353.1| Brassica rapa BrSLGf2b, BrSLGf2a genes, complete... 42 0.47
3gb|AC152753.1| Mus musculus chromosome 17 clone RP23-65L9, compl... 38 7.3
4gb|AC114824.5| Mus musculus BAC clone RP23-342J11 from chromosom... 38 7.3
5gb|AC079172.13| Homo sapiens Xp BAC RP13-491H17 (Roswell Park Ca... 38 7.3
6dbj|AK083760.1| Mus musculus 12 days embryo spinal ganglion cDNA... 38 7.3
7gb|AC011301.9| Homo sapiens BAC clone RP11-299I20 from 2, comple... 38 7.3
8gb|AC113082.6| Mus musculus chromosome 9, clone RP23-291C4, comp... 38 7.3

>emb|AJ245479.1|BNA245479 Brassica napus subsp. napus Sll3, slk, srk, CePP, Fmt, SIAH1, AtPP,
             SIAH2, & ClpP genes
          Length = 64348

 Score = 42.1 bits (21), Expect = 0.47
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 86    tttctcgggggaggaggcatt 106
             |||||||||||||||||||||
Sbjct: 18618 tttctcgggggaggaggcatt 18638



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>dbj|AB190353.1| Brassica rapa BrSLGf2b, BrSLGf2a genes, complete cds
          Length = 39220

 Score = 42.1 bits (21), Expect = 0.47
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 86   tttctcgggggaggaggcatt 106
            |||||||||||||||||||||
Sbjct: 4163 tttctcgggggaggaggcatt 4183



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>gb|AC152753.1| Mus musculus chromosome 17 clone RP23-65L9, complete sequence
          Length = 211853

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 80    gtatcctttctcgggggag 98
             |||||||||||||||||||
Sbjct: 50755 gtatcctttctcgggggag 50737



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>gb|AC114824.5| Mus musculus BAC clone RP23-342J11 from chromosome 17, complete sequence
          Length = 216044

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 80     gtatcctttctcgggggag 98
              |||||||||||||||||||
Sbjct: 185165 gtatcctttctcgggggag 185147



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>gb|AC079172.13| Homo sapiens Xp BAC RP13-491H17 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 83601

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 114   atctaccagtgtccatata 132
             |||||||||||||||||||
Sbjct: 44260 atctaccagtgtccatata 44242



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>dbj|AK083760.1| Mus musculus 12 days embryo spinal ganglion cDNA, RIKEN full-length
            enriched library, clone:D130004B10 product:kinesin 6,
            full insert sequence
          Length = 1677

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 80   gtatcctttctcgggggag 98
            |||||||||||||||||||
Sbjct: 1526 gtatcctttctcgggggag 1544



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>gb|AC011301.9| Homo sapiens BAC clone RP11-299I20 from 2, complete sequence
          Length = 166424

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 9     cccatcatgtctacaacatccac 31
             |||| ||||||||||||||||||
Sbjct: 58593 cccaccatgtctacaacatccac 58571



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>gb|AC113082.6| Mus musculus chromosome 9, clone RP23-291C4, complete sequence
          Length = 218087

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 11    catcatgtctacaacatcc 29
             |||||||||||||||||||
Sbjct: 74339 catcatgtctacaacatcc 74357


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 940,829
Number of Sequences: 3902068
Number of extensions: 940829
Number of successful extensions: 53101
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 53088
Number of HSP's gapped (non-prelim): 13
length of query: 151
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 130
effective length of database: 17,151,101,840
effective search space: 2229643239200
effective search space used: 2229643239200
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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