ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal8d13
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_186390.2| Oryza sativa (japonica cultivar-group), mRNA 176 6e-41
2dbj|AK060475.1| Oryza sativa (japonica cultivar-group) cDNA clon... 176 6e-41
3dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 127 5e-26
4dbj|AP005454.4| Oryza sativa (japonica cultivar-group) genomic D... 127 5e-26
5dbj|AP003847.3| Oryza sativa (japonica cultivar-group) genomic D... 127 5e-26
6gb|BT018231.1| Zea mays clone EL01N0562D11.c mRNA sequence 119 1e-23
7gb|AY108527.1| Zea mays PCO089202 mRNA sequence 119 1e-23
8gb|AY109152.1| Zea mays PCO089203 mRNA sequence 107 5e-20
9dbj|AK059284.1| Oryza sativa (japonica cultivar-group) cDNA clon... 86 2e-13
10dbj|AK106623.1| Oryza sativa (japonica cultivar-group) cDNA clon... 78 4e-11
11gb|AC084296.12| Oryza sativa chromosome 3 BAC OSJNBb0024J04 geno... 64 6e-07
12gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 64 6e-07
13dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 64 6e-07
14gb|K02732.1|MLSST4 Soule murine leukemia virus (S-MuLV) proviral... 44 0.56
15gb|K02731.1|MLSST1 Soule murine leukemia virus (S-MuLV) proviral... 44 0.56
16emb|AL645664.8| Mouse DNA sequence from clone RP23-417P22 on chr... 42 2.2
17gb|K02733.1|MLT Murine leukemia virus (Tikaut) proviral LTR 42 2.2
18gb|AY029303.1| Strongylocentrotus purpuratus ADAM precursor, mRN... 40 8.8
19ref|XM_743971.1| Aspergillus fumigatus Af293 Rab geranylgeranylt... 40 8.8
20gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, compl... 40 8.8
21gb|AC156939.5| Mus musculus BAC clone RP23-136O24 from chromosom... 40 8.8
22dbj|AP006716.1| Staphylococcus haemolyticus JCSC1435 DNA, comple... 40 8.8
23gb|AC011341.3| Homo sapiens chromosome 5 clone CTC-269F1, comple... 40 8.8
24gb|AC008716.7| Homo sapiens chromosome 5 clone CTB-85P21, comple... 40 8.8
25gb|AF410801.1|AF410801 Xenopus laevis nodal related 2 (Xnr2) gen... 40 8.8
26gb|AC067947.6| Homo sapiens BAC clone RP11-492I5 from 2, complet... 40 8.8
27ref|NM_214470.1| Strongylocentrotus purpuratus ADAM (LOC373195),... 40 8.8
28gb|AY487776.1| Natrix tessellata isolate T299 NADH dehydrogenase... 40 8.8
29gb|AY487773.1| Natrix tessellata isolate T157 NADH dehydrogenase... 40 8.8
30gb|AY870641.1| Natrix tessellata voucher CAS 182901 NADH dehydro... 40 8.8
31emb|AL928980.7| Zebrafish DNA sequence from clone DKEY-77M16 in ... 40 8.8
32gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, com... 40 8.8 
>ref|NM_186390.2| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 667

 Score =  176 bits (89), Expect = 6e-41
 Identities = 149/169 (88%)
 Strand = Plus / Minus

                                                                       
Query: 476 tatttaacatcaataaccagcttcccctctgtgatgtttttatcagtggaagcggagatc 535
           ||||| |||||||||||||||||||| |    |||  |||||||||||||||||||||||
Sbjct: 266 tatttcacatcaataaccagcttccctttaccgatagttttatcagtggaagcggagatc 207

                                                                       
Query: 536 ttgaaggtggctggcacgccgcgctcgaccggatcaggcacgatctccacgccgctcacc 595
           |||||||| || ||| |||||||  |||||||||| ||||||||||||||||||||||||
Sbjct: 206 ttgaaggttgcgggctcgccgcgggcgaccggatcgggcacgatctccacgccgctcacc 147

                                                            
Query: 596 ttcaccgggtagtttttgtgcttattgcagtactcgacatctgtgacgg 644
           ||||||||||| || |||  |||||||||||||||||| || |||||||
Sbjct: 146 ttcaccgggtacttcttgcccttattgcagtactcgacgtcggtgacgg 98



 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 87/105 (82%)
 Strand = Plus / Minus

                                                                       
Query: 284 atgctgaacccgaaggagatgcagctcaattcctcatcatgctttccgagcatcttcatc 343
           |||||||||||||| |||||||||||||  |||||||| |  |  || ||||||||||| 
Sbjct: 458 atgctgaacccgaacgagatgcagctcagctcctcatcgttatcacccagcatcttcatg 399

                                                        
Query: 344 tgaatggtgtaagaacctggtggagtgattgatggtaaggtttgc 388
              ||||||||||| ||||||||||||  |||||| | |||||||
Sbjct: 398 gtgatggtgtaagagcctggtggagtgtatgatggcagggtttgc 354
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>dbj|AK060475.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-012-F03, full
           insert sequence
          Length = 678

 Score =  176 bits (89), Expect = 6e-41
 Identities = 149/169 (88%)
 Strand = Plus / Minus

                                                                       
Query: 476 tatttaacatcaataaccagcttcccctctgtgatgtttttatcagtggaagcggagatc 535
           ||||| |||||||||||||||||||| |    |||  |||||||||||||||||||||||
Sbjct: 266 tatttcacatcaataaccagcttccctttaccgatagttttatcagtggaagcggagatc 207

                                                                       
Query: 536 ttgaaggtggctggcacgccgcgctcgaccggatcaggcacgatctccacgccgctcacc 595
           |||||||| || ||| |||||||  |||||||||| ||||||||||||||||||||||||
Sbjct: 206 ttgaaggttgcgggctcgccgcgggcgaccggatcgggcacgatctccacgccgctcacc 147

                                                            
Query: 596 ttcaccgggtagtttttgtgcttattgcagtactcgacatctgtgacgg 644
           ||||||||||| || |||  |||||||||||||||||| || |||||||
Sbjct: 146 ttcaccgggtacttcttgcccttattgcagtactcgacgtcggtgacgg 98



 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 87/105 (82%)
 Strand = Plus / Minus

                                                                       
Query: 284 atgctgaacccgaaggagatgcagctcaattcctcatcatgctttccgagcatcttcatc 343
           |||||||||||||| |||||||||||||  |||||||| |  |  || ||||||||||| 
Sbjct: 458 atgctgaacccgaacgagatgcagctcagctcctcatcgttatcacccagcatcttcatg 399

                                                        
Query: 344 tgaatggtgtaagaacctggtggagtgattgatggtaaggtttgc 388
              ||||||||||| ||||||||||||  |||||| | |||||||
Sbjct: 398 gtgatggtgtaagagcctggtggagtgtatgatggcagggtttgc 354
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score =  127 bits (64), Expect = 5e-26
 Identities = 82/88 (93%)
 Strand = Plus / Minus

                                                                           
Query: 519     cagtggaagcggagatcttgaaggtggctggcacgccgcgctcgaccggatcaggcacga 578
               ||||||||||||||||||||||||| || ||| |||||||  |||||||||| |||||||
Sbjct: 3231342 cagtggaagcggagatcttgaaggttgcgggctcgccgcgggcgaccggatcgggcacga 3231283

                                           
Query: 579     tctccacgccgctcaccttcaccgggta 606
               ||||||||||||||||||||||||||||
Sbjct: 3231282 tctccacgccgctcaccttcaccgggta 3231255



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                     
Query: 284     atgctgaacccgaaggagatgcagctcaattcctcatc 321
               |||||||||||||| |||||||||||||  ||||||||
Sbjct: 3233684 atgctgaacccgaacgagatgcagctcagctcctcatc 3233647



 Score = 44.1 bits (22), Expect = 0.56
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                         
Query: 476     tatttaacatcaataaccagcttccc 501
               ||||| ||||||||||||||||||||
Sbjct: 3233350 tatttcacatcaataaccagcttccc 3233325
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>dbj|AP005454.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
              clone:P0455F03
          Length = 158201

 Score =  127 bits (64), Expect = 5e-26
 Identities = 82/88 (93%)
 Strand = Plus / Minus

                                                                          
Query: 519    cagtggaagcggagatcttgaaggtggctggcacgccgcgctcgaccggatcaggcacga 578
              ||||||||||||||||||||||||| || ||| |||||||  |||||||||| |||||||
Sbjct: 146332 cagtggaagcggagatcttgaaggttgcgggctcgccgcgggcgaccggatcgggcacga 146273

                                          
Query: 579    tctccacgccgctcaccttcaccgggta 606
              ||||||||||||||||||||||||||||
Sbjct: 146272 tctccacgccgctcaccttcaccgggta 146245



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                    
Query: 284    atgctgaacccgaaggagatgcagctcaattcctcatc 321
              |||||||||||||| |||||||||||||  ||||||||
Sbjct: 148674 atgctgaacccgaacgagatgcagctcagctcctcatc 148637



 Score = 44.1 bits (22), Expect = 0.56
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 476    tatttaacatcaataaccagcttccc 501
              ||||| ||||||||||||||||||||
Sbjct: 148340 tatttcacatcaataaccagcttccc 148315
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>dbj|AP003847.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1714_H10
          Length = 191580

 Score =  127 bits (64), Expect = 5e-26
 Identities = 82/88 (93%)
 Strand = Plus / Minus

                                                                         
Query: 519   cagtggaagcggagatcttgaaggtggctggcacgccgcgctcgaccggatcaggcacga 578
             ||||||||||||||||||||||||| || ||| |||||||  |||||||||| |||||||
Sbjct: 41035 cagtggaagcggagatcttgaaggttgcgggctcgccgcgggcgaccggatcgggcacga 40976

                                         
Query: 579   tctccacgccgctcaccttcaccgggta 606
             ||||||||||||||||||||||||||||
Sbjct: 40975 tctccacgccgctcaccttcaccgggta 40948



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                   
Query: 284   atgctgaacccgaaggagatgcagctcaattcctcatc 321
             |||||||||||||| |||||||||||||  ||||||||
Sbjct: 43377 atgctgaacccgaacgagatgcagctcagctcctcatc 43340



 Score = 44.1 bits (22), Expect = 0.56
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 476   tatttaacatcaataaccagcttccc 501
             ||||| ||||||||||||||||||||
Sbjct: 43043 tatttcacatcaataaccagcttccc 43018
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>gb|BT018231.1| Zea mays clone EL01N0562D11.c mRNA sequence
          Length = 606

 Score =  119 bits (60), Expect = 1e-23
 Identities = 102/116 (87%)
 Strand = Plus / Minus

                                                                       
Query: 491 accagcttcccctctgtgatgtttttatcagtggaagcggagatcttgaaggtggctggc 550
           |||||||||||||    |||| |||||||||| ||||||||||||||||| ||||| |||
Sbjct: 183 accagcttccccttctcgatggttttatcagtagaagcggagatcttgaaagtggcgggc 124

                                                                   
Query: 551 acgccgcgctcgaccggatcaggcacgatctccacgccgctcaccttcaccgggta 606
             |||| ||||||||||||| |||||||||| ||| ||||||||||||||||||||
Sbjct: 123 ttgccgggctcgaccggatcgggcacgatctgcaccccgctcaccttcaccgggta 68



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 281 ccaatgctgaacccgaaggagatgcagct 309
           ||||||||||| ||||| |||||||||||
Sbjct: 393 ccaatgctgaagccgaacgagatgcagct 365
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>gb|AY108527.1| Zea mays PCO089202 mRNA sequence
          Length = 666

 Score =  119 bits (60), Expect = 1e-23
 Identities = 102/116 (87%)
 Strand = Plus / Minus

                                                                       
Query: 491 accagcttcccctctgtgatgtttttatcagtggaagcggagatcttgaaggtggctggc 550
           |||||||||||||    |||| |||||||||| ||||||||||||||||| ||||| |||
Sbjct: 262 accagcttccccttctcgatggttttatcagtagaagcggagatcttgaaagtggcgggc 203

                                                                   
Query: 551 acgccgcgctcgaccggatcaggcacgatctccacgccgctcaccttcaccgggta 606
             |||| ||||||||||||| |||||||||| ||| ||||||||||||||||||||
Sbjct: 202 ttgccgggctcgaccggatcgggcacgatctgcaccccgctcaccttcaccgggta 147



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 281 ccaatgctgaacccgaaggagatgcagct 309
           ||||||||||| ||||| |||||||||||
Sbjct: 472 ccaatgctgaagccgaacgagatgcagct 444
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>gb|AY109152.1| Zea mays PCO089203 mRNA sequence
          Length = 811

 Score =  107 bits (54), Expect = 5e-20
 Identities = 102/118 (86%)
 Strand = Plus / Minus

                                                                       
Query: 491 accagcttcccctctgtgatgtttttatcagtggaagcggagatcttgaaggtggctggc 550
           |||||||||||||    |||| |||||||||| ||||||||||||||||| ||||| |||
Sbjct: 273 accagcttccccttctcgatggttttatcagtagaagcggagatcttgaaagtggcgggc 214

                                                                     
Query: 551 acgccgcgctcgaccggatcaggcacgatctccacgccgctcaccttcaccgggtagt 608
             |||| | ||||||||||| |||| ||||| ||| ||||||||||||||||||||||
Sbjct: 213 ttgccgggttcgaccggatcgggcaggatctgcaccccgctcaccttcaccgggtagt 156



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 33/35 (94%)
 Strand = Plus / Minus

                                              
Query: 277 gaagccaatgctgaacccgaaggagatgcagctca 311
           |||||| |||||||||||||| |||||||||||||
Sbjct: 487 gaagccgatgctgaacccgaacgagatgcagctca 453
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>dbj|AK059284.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-025-D07, full
           insert sequence
          Length = 566

 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 82/95 (86%)
 Strand = Plus / Minus

                                                                       
Query: 476 tatttaacatcaataaccagcttcccctctgtgatgtttttatcagtggaagcggagatc 535
           ||||| |||||||||||||||||||| |    |||  |||||||||||||||||||||||
Sbjct: 97  tatttcacatcaataaccagcttccctttaccgatagttttatcagtggaagcggagatc 38

                                              
Query: 536 ttgaaggtggctggcacgccgcgctcgaccggatc 570
           |||||||| || ||| |||||||  ||||||||||
Sbjct: 37  ttgaaggttgcgggctcgccgcgggcgaccggatc 3



 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 87/105 (82%)
 Strand = Plus / Minus

                                                                       
Query: 284 atgctgaacccgaaggagatgcagctcaattcctcatcatgctttccgagcatcttcatc 343
           |||||||||||||| |||||||||||||  |||||||| |  |  || ||||||||||| 
Sbjct: 289 atgctgaacccgaacgagatgcagctcagctcctcatcgttatcacccagcatcttcatg 230

                                                        
Query: 344 tgaatggtgtaagaacctggtggagtgattgatggtaaggtttgc 388
              ||||||||||| ||||||||||||  |||||| | |||||||
Sbjct: 229 gtgatggtgtaagagcctggtggagtgtatgatggcagggtttgc 185
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>dbj|AK106623.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-113-B04, full
           insert sequence
          Length = 678

 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 90/107 (84%)
 Strand = Plus / Minus

                                                                       
Query: 494 agcttcccctctgtgatgtttttatcagtggaagcggagatcttgaaggtggctggcacg 553
           ||||||||||  |||||| ||||||| ||||| |||||||||||||||||||| |||   
Sbjct: 289 agcttccccttagtgatgcttttatccgtggatgcggagatcttgaaggtggccggctgc 230

                                                          
Query: 554 ccgcgctcgaccggatcaggcacgatctccacgccgctcaccttcac 600
           ||||   |||| || ||||| |||||||| || ||||||||||||||
Sbjct: 229 ccgctgacgacggggtcagggacgatctctactccgctcaccttcac 183



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 31/32 (96%)
 Strand = Plus / Minus

                                           
Query: 350 gtgtaagaacctggtggagtgattgatggtaa 381
           ||||||||||||||||| ||||||||||||||
Sbjct: 433 gtgtaagaacctggtggggtgattgatggtaa 402
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>gb|AC084296.12| Oryza sativa chromosome 3 BAC OSJNBb0024J04 genomic sequence, complete
             sequence
          Length = 145507

 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 68/80 (85%)
 Strand = Plus / Minus

                                                                         
Query: 521   gtggaagcggagatcttgaaggtggctggcacgccgcgctcgaccggatcaggcacgatc 580
             ||||| |||||||||||||||||||| |||   ||||   |||| || ||||| ||||||
Sbjct: 88332 gtggatgcggagatcttgaaggtggccggctgcccgctgacgacggggtcagggacgatc 88273

                                 
Query: 581   tccacgccgctcaccttcac 600
             ||||| ||||||||||||||
Sbjct: 88272 tccactccgctcaccttcac 88253
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 68/80 (85%)
 Strand = Plus / Minus

                                                                            
Query: 521      gtggaagcggagatcttgaaggtggctggcacgccgcgctcgaccggatcaggcacgatc 580
                ||||| |||||||||||||||||||| |||   ||||   |||| || ||||| ||||||
Sbjct: 32436204 gtggatgcggagatcttgaaggtggccggctgcccgctgacgacggggtcagggacgatc 32436145

                                    
Query: 581      tccacgccgctcaccttcac 600
                ||||| ||||||||||||||
Sbjct: 32436144 tccactccgctcaccttcac 32436125
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 68/80 (85%)
 Strand = Plus / Minus

                                                                            
Query: 521      gtggaagcggagatcttgaaggtggctggcacgccgcgctcgaccggatcaggcacgatc 580
                ||||| |||||||||||||||||||| |||   ||||   |||| || ||||| ||||||
Sbjct: 32526714 gtggatgcggagatcttgaaggtggccggctgcccgctgacgacggggtcagggacgatc 32526655

                                    
Query: 581      tccacgccgctcaccttcac 600
                ||||| ||||||||||||||
Sbjct: 32526654 tccactccgctcaccttcac 32526635
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>gb|K02732.1|MLSST4 Soule murine leukemia virus (S-MuLV) proviral LTR, clone ST4
          Length = 787

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 54 ccagagctgatgttctcaaaaa 75
          ||||||||||||||||||||||
Sbjct: 70 ccagagctgatgttctcaaaaa 91
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>gb|K02731.1|MLSST1 Soule murine leukemia virus (S-MuLV) proviral LTR, clone ST1
          Length = 523

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 54 ccagagctgatgttctcaaaaa 75
          ||||||||||||||||||||||
Sbjct: 70 ccagagctgatgttctcaaaaa 91
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>emb|AL645664.8| Mouse DNA sequence from clone RP23-417P22 on chromosome 13 Contains the
             5' end of the Gmds gene for GDP-mannose 4, 6-dehydratase,
             the 3' end of a novel gene and a CpG island, complete
             sequence
          Length = 193914

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 76    ctaacatagtttcatatttca 96
             |||||||||||||||||||||
Sbjct: 27073 ctaacatagtttcatatttca 27053
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>gb|K02733.1|MLT Murine leukemia virus (Tikaut) proviral LTR
          Length = 641

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 54 ccagagctgatgttctcaaaa 74
          |||||||||||||||||||||
Sbjct: 70 ccagagctgatgttctcaaaa 90
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>gb|AY029303.1| Strongylocentrotus purpuratus ADAM precursor, mRNA, complete cds
          Length = 3072

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 155  acccacgagtgttacacaga 174
            ||||||||||||||||||||
Sbjct: 2068 acccacgagtgttacacaga 2049
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>ref|XM_743971.1| Aspergillus fumigatus Af293 Rab geranylgeranyltransferase, subunit
           beta (Afu7g04460) partial mRNA
          Length = 915

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 331 gagcatcttcatctgaatggtgta 354
           |||||||||| |||||||||||||
Sbjct: 40  gagcatcttcgtctgaatggtgta 63
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>gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, complete sequence
          Length = 4895836

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 573     gcacgatctccacgccgctc 592
               ||||||||||||||||||||
Sbjct: 4662632 gcacgatctccacgccgctc 4662651
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>gb|AC156939.5| Mus musculus BAC clone RP23-136O24 from chromosome 12, complete sequence
          Length = 218561

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 80     catagtttcatatttcattacacc 103
              ||||||||||||||| ||||||||
Sbjct: 130892 catagtttcatatttaattacacc 130915
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>dbj|AP006716.1| Staphylococcus haemolyticus JCSC1435 DNA, complete genome
          Length = 2685015

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 84      gtttcatatttcattacacc 103
               ||||||||||||||||||||
Sbjct: 1293708 gtttcatatttcattacacc 1293689
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>gb|AC011341.3| Homo sapiens chromosome 5 clone CTC-269F1, complete sequence
          Length = 51684

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 270   gggcaaggaagccaatgctg 289
             ||||||||||||||||||||
Sbjct: 30310 gggcaaggaagccaatgctg 30291
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>gb|AC008716.7| Homo sapiens chromosome 5 clone CTB-85P21, complete sequence
          Length = 184589

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 270  gggcaaggaagccaatgctg 289
            ||||||||||||||||||||
Sbjct: 7207 gggcaaggaagccaatgctg 7226
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>gb|AF410801.1|AF410801 Xenopus laevis nodal related 2 (Xnr2) gene, partial cds
          Length = 4552

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 95   cattacaccatgttccaact 114
            ||||||||||||||||||||
Sbjct: 1257 cattacaccatgttccaact 1276
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>gb|AC067947.6| Homo sapiens BAC clone RP11-492I5 from 2, complete sequence
          Length = 137457

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 331    gagcatcttcatctgaatgg 350
              ||||||||||||||||||||
Sbjct: 118102 gagcatcttcatctgaatgg 118121
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>ref|NM_214470.1| Strongylocentrotus purpuratus ADAM (LOC373195), mRNA
          Length = 3072

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 155  acccacgagtgttacacaga 174
            ||||||||||||||||||||
Sbjct: 2068 acccacgagtgttacacaga 2049
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>gb|AY487776.1| Natrix tessellata isolate T299 NADH dehydrogenase subunit 2 (ND2)
           gene, complete cds; mitochondrial
          Length = 1029

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 475 atatttaacatcaataacca 494
           ||||||||||||||||||||
Sbjct: 888 atatttaacatcaataacca 907
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>gb|AY487773.1| Natrix tessellata isolate T157 NADH dehydrogenase subunit 2 (ND2)
           gene, complete cds; mitochondrial
          Length = 1029

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 475 atatttaacatcaataacca 494
           ||||||||||||||||||||
Sbjct: 888 atatttaacatcaataacca 907
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>gb|AY870641.1| Natrix tessellata voucher CAS 182901 NADH dehydrogenase subunit 2
           (ND2) gene, complete cds; mitochondrial
          Length = 1029

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 475 atatttaacatcaataacca 494
           ||||||||||||||||||||
Sbjct: 888 atatttaacatcaataacca 907
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>emb|AL928980.7| Zebrafish DNA sequence from clone DKEY-77M16 in linkage group 11,
              complete sequence
          Length = 167387

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 69     tcaaaaactaacatagtttc 88
              ||||||||||||||||||||
Sbjct: 113901 tcaaaaactaacatagtttc 113882
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>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence
          Length = 3809201

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 555     cgcgctcgaccggatcaggc 574
               ||||||||||||||||||||
Sbjct: 2234998 cgcgctcgaccggatcaggc 2235017


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,550,521
Number of Sequences: 3902068
Number of extensions: 5550521
Number of successful extensions: 102573
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 102303
Number of HSP's gapped (non-prelim): 263
length of query: 644
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 621
effective length of database: 17,143,297,704
effective search space: 10645987874184
effective search space used: 10645987874184
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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