ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbaal33b21 |
|---|---|
| Clone Library Name | barley_pub |
>MDHP_MAIZE (P15719) Malate dehydrogenase [NADP], chloroplast precursor (EC| 1.1.1.82) (NADP-MDH) Length = 432 Score = 30.8 bits (68), Expect = 0.97 Identities = 13/21 (61%), Positives = 15/21 (71%) Frame = -2 Query: 230 LQGKKNAFCXXPGDTMLPXEM 168 L G+ NAFC P DTMLP E+ Sbjct: 412 LTGEGNAFCDLPEDTMLPGEV 432
>MDHP1_SORBI (P17606) Malate dehydrogenase [NADP] 1, chloroplast precursor (EC| 1.1.1.82) (NADP-MDH-1) Length = 429 Score = 29.6 bits (65), Expect = 2.2 Identities = 12/21 (57%), Positives = 15/21 (71%) Frame = -2 Query: 230 LQGKKNAFCXXPGDTMLPXEM 168 L G+ NA+C P DTMLP E+ Sbjct: 409 LTGEGNAYCDVPEDTMLPGEV 429
>MDHP_PEA (P21528) Malate dehydrogenase [NADP], chloroplast precursor (EC| 1.1.1.82) (NADP-MDH) Length = 441 Score = 29.3 bits (64), Expect = 2.8 Identities = 13/21 (61%), Positives = 14/21 (66%) Frame = -2 Query: 230 LQGKKNAFCXXPGDTMLPXEM 168 L G+ A C PGDTMLP EM Sbjct: 421 LTGEGIAVCDLPGDTMLPGEM 441
>MDHP_MEDSA (O48902) Malate dehydrogenase [NADP], chloroplast precursor (EC| 1.1.1.82) (NADP-MDH) Length = 437 Score = 29.3 bits (64), Expect = 2.8 Identities = 13/21 (61%), Positives = 14/21 (66%) Frame = -2 Query: 230 LQGKKNAFCXXPGDTMLPXEM 168 L G+ A C PGDTMLP EM Sbjct: 417 LTGEGIAVCDLPGDTMLPGEM 437
>MYH11_CHICK (P10587) Myosin-11 (Myosin heavy chain, gizzard smooth muscle)| Length = 1978 Score = 28.5 bits (62), Expect = 4.8 Identities = 11/30 (36%), Positives = 17/30 (56%) Frame = +1 Query: 31 CSLXAVASLNYPSSCWCWEHCDPSNNNMTS 120 C L + Y +S W ++ DP N+N+TS Sbjct: 581 CILHYAGKVTYNASAWLTKNMDPLNDNVTS 610
>GDNF_RAT (Q07731) Glial cell line-derived neurotrophic factor precursor| Length = 211 Score = 28.5 bits (62), Expect = 4.8 Identities = 11/34 (32%), Positives = 20/34 (58%) Frame = -1 Query: 156 LWTILAICQLLPRCHVIIRRITVFPTPTGRRIVE 55 LW ++A+C V++ + FP P G+R++E Sbjct: 3 LWDVVAVCL------VLLHTASAFPLPAGKRLLE 30
>GDNF_MOUSE (P48540) Glial cell line-derived neurotrophic factor precursor| Length = 211 Score = 28.5 bits (62), Expect = 4.8 Identities = 11/34 (32%), Positives = 20/34 (58%) Frame = -1 Query: 156 LWTILAICQLLPRCHVIIRRITVFPTPTGRRIVE 55 LW ++A+C V++ + FP P G+R++E Sbjct: 3 LWDVVAVCL------VLLHTASAFPLPAGKRLLE 30
>RSMB_PASMU (Q9CKP7) Ribosomal RNA small subunit methyltransferase B (EC| 2.1.1.-) (rRNA (cytosine-C(5)-)-methyltransferase) (16S rRNA m5C967 methyltransferase) Length = 446 Score = 28.5 bits (62), Expect = 4.8 Identities = 16/56 (28%), Positives = 26/56 (46%) Frame = -1 Query: 225 GKKKCILXXXWGYNASXRDVVLLLWTILAICQLLPRCHVIIRRITVFPTPTGRRIV 58 GK L + +D+ LL +C++LPR +II+++ P RIV Sbjct: 32 GKSLSTLIPDTQHQVKTQDLPLLQEICFGVCRVLPRLELIIKQLVDKPLKGKTRIV 87
>MDHP2_SORBI (P37229) Malate dehydrogenase [NADP] 2, chloroplast precursor (EC| 1.1.1.82) (NADP-MDH-2) Length = 432 Score = 28.5 bits (62), Expect = 4.8 Identities = 12/20 (60%), Positives = 14/20 (70%) Frame = -2 Query: 230 LQGKKNAFCXXPGDTMLPXE 171 L G+ +AFC P DTMLP E Sbjct: 412 LTGEGDAFCDLPEDTMLPGE 431
>ATRN_RAT (Q99J86) Attractin precursor (Zitter protein)| Length = 1432 Score = 27.7 bits (60), Expect = 8.2 Identities = 8/18 (44%), Positives = 10/18 (55%) Frame = +1 Query: 70 SCWCWEHCDPSNNNMTSW 123 S WCWE P N++ W Sbjct: 868 SYWCWEDMSPFTNSLLQW 885
>ATRN_MOUSE (Q9WU60) Attractin precursor (Mahogany protein)| Length = 1428 Score = 27.7 bits (60), Expect = 8.2 Identities = 8/18 (44%), Positives = 10/18 (55%) Frame = +1 Query: 70 SCWCWEHCDPSNNNMTSW 123 S WCWE P N++ W Sbjct: 864 SYWCWEDMSPFTNSLLQW 881
>UBP6_HUMAN (P35125) Ubiquitin carboxyl-terminal hydrolase 6 (EC 3.1.2.15)| (Ubiquitin thioesterase 6) (Ubiquitin-specific-processing protease 6) (Deubiquitinating enzyme 6) (Proto-oncogene TRE-2) Length = 1406 Score = 27.7 bits (60), Expect = 8.2 Identities = 10/31 (32%), Positives = 17/31 (54%) Frame = +1 Query: 31 CSLXAVASLNYPSSCWCWEHCDPSNNNMTSW 123 C + A++ + ++CW EHC +N SW Sbjct: 477 CWVRAISQEDQLATCWQAEHCGEVHNKDMSW 507
>ATRN_HUMAN (O75882) Attractin precursor (Mahogany homolog) (DPPT-L)| Length = 1429 Score = 27.7 bits (60), Expect = 8.2 Identities = 8/18 (44%), Positives = 10/18 (55%) Frame = +1 Query: 70 SCWCWEHCDPSNNNMTSW 123 S WCWE P N++ W Sbjct: 865 SYWCWEDMSPFTNSLLQW 882
>RSMB_HAEIN (P44788) Ribosomal RNA small subunit methyltransferase B (EC| 2.1.1.-) (rRNA (cytosine-C(5)-)-methyltransferase) (16S rRNA m5C967 methyltransferase) Length = 451 Score = 27.7 bits (60), Expect = 8.2 Identities = 17/56 (30%), Positives = 25/56 (44%) Frame = -1 Query: 225 GKKKCILXXXWGYNASXRDVVLLLWTILAICQLLPRCHVIIRRITVFPTPTGRRIV 58 GK L + +D+ LL +C++LPR II+R+ P RIV Sbjct: 37 GKSLSALIPEVQLSVKAQDLPLLQEICFGVCRVLPRLEQIIKRLVDKPLKGKTRIV 92 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 32,861,374 Number of Sequences: 219361 Number of extensions: 521401 Number of successful extensions: 1101 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 1089 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1101 length of database: 80,573,946 effective HSP length: 57 effective length of database: 68,070,369 effective search space used: 1633688856 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
