ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal33b20 |
|---|---|
| Clone Library Name | barley_pub |
>IF5_PHAVU (P48724) Eukaryotic translation initiation factor 5 (eIF-5)| Length = 443 Score = 45.8 bits (107), Expect = 2e-05 Identities = 20/57 (35%), Positives = 34/57 (59%), Gaps = 1/57 (1%) Frame = -1 Query: 365 CYEDDKLMKLFPEIIRSLYDQDVLAEDTILLWFRKGSNQKGRQSFV-KALEPFVKWL 198 C + +K ++++LYD DVL E+ I+LW++KG + S + K +PF+ WL Sbjct: 377 CKPNSNALKEVALVLKTLYDADVLEEEAIVLWYQKGLKGDNKNSKIWKNAQPFIDWL 433
>IF5Z_ARATH (Q9S825) Probable eukaryotic translation initiation factor 5-2| (eIF-5 2) Length = 437 Score = 44.7 bits (104), Expect = 5e-05 Identities = 22/67 (32%), Positives = 42/67 (62%), Gaps = 3/67 (4%) Frame = -1 Query: 389 LIYKVQTQCYED--DKLMKLFPEIIRSLYDQDVLAEDTILLWFRKGSNQKGRQSFV-KAL 219 L+ + T C ++ ++ +K ++++LYDQD++ E+ +L W+ KG + S V K + Sbjct: 360 LLNSIGTFCGKNGNEEALKEVALVLKALYDQDIIEEEVVLDWYEKGLTGADKSSPVWKNV 419 Query: 218 EPFVKWL 198 +PFV+WL Sbjct: 420 KPFVEWL 426
>IF5_HUMAN (P55010) Eukaryotic translation initiation factor 5 (eIF-5)| Length = 431 Score = 43.1 bits (100), Expect = 2e-04 Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 4/55 (7%) Frame = -1 Query: 350 KLMKLFPEIIRSLYDQDVLAEDTILLWFRKGSNQKGRQSFVKAL----EPFVKWL 198 +L+ P I++ +YD D+L E+ I+ W K S + + K + EPF+KWL Sbjct: 328 QLISKIPHILKEMYDADLLEEEVIISWSEKASKKYVSKELAKEIRVKAEPFIKWL 382
>IF5_RAT (Q07205) Eukaryotic translation initiation factor 5 (eIF-5)| Length = 429 Score = 43.1 bits (100), Expect = 2e-04 Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 4/55 (7%) Frame = -1 Query: 350 KLMKLFPEIIRSLYDQDVLAEDTILLWFRKGSNQKGRQSFVKAL----EPFVKWL 198 +L+ P I++ +YD D+L E+ I+ W K S + + K + EPF+KWL Sbjct: 326 QLISKIPHILKEMYDADLLEEEVIISWSEKASKKYVSKELAKEIRVKAEPFIKWL 380
>IF5_MOUSE (P59325) Eukaryotic translation initiation factor 5 (eIF-5)| Length = 429 Score = 43.1 bits (100), Expect = 2e-04 Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 4/55 (7%) Frame = -1 Query: 350 KLMKLFPEIIRSLYDQDVLAEDTILLWFRKGSNQKGRQSFVKAL----EPFVKWL 198 +L+ P I++ +YD D+L E+ I+ W K S + + K + EPF+KWL Sbjct: 326 QLISKIPHILKEMYDADLLEEEVIISWSEKASKKYVSKELAKEIRVKAEPFIKWL 380
>IF5_MAIZE (P55876) Eukaryotic translation initiation factor 5 (eIF-5)| Length = 451 Score = 41.6 bits (96), Expect = 5e-04 Identities = 18/49 (36%), Positives = 29/49 (59%) Frame = -1 Query: 344 MKLFPEIIRSLYDQDVLAEDTILLWFRKGSNQKGRQSFVKALEPFVKWL 198 +K P ++++LYD D+L E+TI+ W+ VK +PFV+WL Sbjct: 391 LKEVPVVLKALYDGDILDEETIVDWYNDAVAAGKDSQVVKNAKPFVEWL 439
>IF5Y_ARATH (Q9C8F1) Probable eukaryotic translation initiation factor 5-1| (eIF-5 1) Length = 439 Score = 41.2 bits (95), Expect = 6e-04 Identities = 17/43 (39%), Positives = 27/43 (62%) Frame = -1 Query: 326 IIRSLYDQDVLAEDTILLWFRKGSNQKGRQSFVKALEPFVKWL 198 +I+ LYD+D+L ED I+ W+ KG +K + PF++WL Sbjct: 390 VIKGLYDEDILDEDVIVEWYNKGVKS---SPVLKNVTPFIEWL 429
>IF5_CAEEL (Q22918) Eukaryotic translation initiation factor 5 (eIF-5)| Length = 436 Score = 40.8 bits (94), Expect = 8e-04 Identities = 20/55 (36%), Positives = 33/55 (60%), Gaps = 4/55 (7%) Frame = -1 Query: 350 KLMKLFPEIIRSLYDQDVLAEDTILLWFRKGSNQKGRQSFVKAL----EPFVKWL 198 +L+ II+SLYD+DV ED+++ W K S++ +SF K + +P + WL Sbjct: 315 ELLSKSAHIIKSLYDEDVCEEDSLISWGEKPSSKYVSKSFAKKIIENSQPVLNWL 369
>EI2BE_RAT (Q64350) Translation initiation factor eIF-2B epsilon subunit| (eIF-2B GDP-GTP exchange factor) Length = 716 Score = 35.4 bits (80), Expect = 0.033 Identities = 18/56 (32%), Positives = 34/56 (60%), Gaps = 2/56 (3%) Frame = -1 Query: 359 EDDKLMKLFPEIIRSLYDQDVLAEDTILLWF-RKGSNQKGRQ-SFVKALEPFVKWL 198 E + L+ +++ + Y ++LAE+TIL WF ++ KG+Q + L+ F++WL Sbjct: 650 EHETLVPSLAKVLMAFYQLEILAEETILSWFSQRDITDKGQQLRKNQQLQRFIQWL 705
>EI2BE_RABIT (P47823) Translation initiation factor eIF-2B epsilon subunit| (eIF-2B GDP-GTP exchange factor) Length = 721 Score = 35.4 bits (80), Expect = 0.033 Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 2/56 (3%) Frame = -1 Query: 359 EDDKLMKLFPEIIRSLYDQDVLAEDTILLWF-RKGSNQKGRQ-SFVKALEPFVKWL 198 E + L +++ Y ++LAE+TIL WF ++ KGRQ + L+ F++WL Sbjct: 655 EHEALGTCIAKVLMGFYQLEILAEETILSWFGQRDVTDKGRQLRKNQQLQRFIQWL 710
>IF5_YEAST (P38431) Eukaryotic translation initiation factor 5 (eIF-5)| Length = 405 Score = 34.3 bits (77), Expect = 0.074 Identities = 17/58 (29%), Positives = 33/58 (56%), Gaps = 4/58 (6%) Frame = -1 Query: 359 EDDKLMKLFPEIIRSLYDQDVLAEDTILLWFRKGSN----QKGRQSFVKALEPFVKWL 198 E L+ L P+I+ LY+ D+++E+ I+ + K S ++ + +A +PF+ WL Sbjct: 335 EHKDLIPLLPKILVQLYNNDIISEEEIMRFGTKSSKKFVPKEVSKKVRRAAKPFITWL 392
>EI2BE_HUMAN (Q13144) Translation initiation factor eIF-2B epsilon subunit| (eIF-2B GDP-GTP exchange factor) Length = 721 Score = 34.3 bits (77), Expect = 0.074 Identities = 16/46 (34%), Positives = 31/46 (67%), Gaps = 2/46 (4%) Frame = -1 Query: 329 EIIRSLYDQDVLAEDTILLWF-RKGSNQKGRQ-SFVKALEPFVKWL 198 +++ + Y ++LAE+TIL WF ++ + KG+Q + L+ F++WL Sbjct: 665 KVLMAFYQLEILAEETILSWFSQRDTTDKGQQLRKNQQLQRFIQWL 710
>EI2BE_CANAL (P87163) Translation initiation factor eIF-2B epsilon subunit| (eIF-2B GDP-GTP exchange factor) (Guanine nucleotide exchange factor subunit GCD6) (GCD complex subunit GCD6) (Fragment) Length = 189 Score = 33.5 bits (75), Expect = 0.13 Identities = 15/42 (35%), Positives = 23/42 (54%) Frame = -1 Query: 323 IRSLYDQDVLAEDTILLWFRKGSNQKGRQSFVKALEPFVKWL 198 ++S YD +V+ E+ IL W+ G N + R K F+ WL Sbjct: 136 VKSFYDMEVVEEENILKWWNDGENDEVRTLAAK----FITWL 173
>IF4G1_HUMAN (Q04637) Eukaryotic translation initiation factor 4 gamma 1| (eIF-4-gamma 1) (eIF-4G1) (eIF-4G 1) (p220) Length = 1600 Score = 33.1 bits (74), Expect = 0.17 Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 6/51 (11%) Frame = -1 Query: 332 PEIIR----SLYDQDVLAEDTILLW--FRKGSNQKGRQSFVKALEPFVKWL 198 P ++R +LYD+DV+ ED W + + Q+G+ +K++ F KWL Sbjct: 1540 PNLLRMFFDALYDEDVVKEDAFYSWESSKDPAEQQGKGVALKSVTAFFKWL 1590
>IF4G3_HUMAN (O43432) Eukaryotic translation initiation factor 4 gamma 3| (eIF-4-gamma 3) (eIF-4G 3) (eIF4G 3) (eIF-4-gamma II) (eIF4GII) Length = 1585 Score = 32.7 bits (73), Expect = 0.22 Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 2/65 (3%) Frame = -1 Query: 386 IYKVQTQCYEDDKLMKLFPEIIRSLYDQDVLAEDTILLW--FRKGSNQKGRQSFVKALEP 213 +Y +Q + D+ L LYD++V++ED W + + Q G+ +K++ Sbjct: 1511 LYALQASIVKLDQPANLLRMFFDCLYDEEVISEDAFYKWESSKDPAEQNGKGVALKSVTA 1570 Query: 212 FVKWL 198 F WL Sbjct: 1571 FFTWL 1575
>EI2BE_YEAST (P32501) Translation initiation factor eIF-2B epsilon subunit| (eIF-2B GDP-GTP exchange factor) (Guanine nucleotide exchange factor subunit GCD6) (GCD complex subunit GCD6) Length = 712 Score = 32.7 bits (73), Expect = 0.22 Identities = 19/64 (29%), Positives = 32/64 (50%) Frame = -1 Query: 389 LIYKVQTQCYEDDKLMKLFPEIIRSLYDQDVLAEDTILLWFRKGSNQKGRQSFVKALEPF 210 ++ K+ Q ++ L+ LF ++ SLYD D++ ED I W+ S K + Sbjct: 639 IMEKIVEQSFDKPDLI-LFSALV-SLYDNDIIEEDVIYKWWDNVSTDPRYDEVKKLTVKW 696 Query: 209 VKWL 198 V+WL Sbjct: 697 VEWL 700
>IF4G3_MOUSE (Q80XI3) Eukaryotic translation initiation factor 4 gamma 3| (eIF-4-gamma 3) (eIF-4G 3) (eIF4G 3) (eIF-4-gamma II) (eIF4GII) Length = 1579 Score = 32.3 bits (72), Expect = 0.28 Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 2/65 (3%) Frame = -1 Query: 386 IYKVQTQCYEDDKLMKLFPEIIRSLYDQDVLAEDTILLW--FRKGSNQKGRQSFVKALEP 213 +Y +Q + D+ L LYD++V++ED W + + Q G+ +K++ Sbjct: 1505 LYALQASIVKLDQPANLLRMFFDCLYDEEVISEDAFYKWESSKDPAEQAGKGVALKSVTA 1564 Query: 212 FVKWL 198 F WL Sbjct: 1565 FFTWL 1569
>IF4G1_RABIT (P41110) Eukaryotic translation initiation factor 4 gamma 1| (eIF-4-gamma 1) (eIF-4G1) (eIF-4G 1) (p220) Length = 1402 Score = 32.0 bits (71), Expect = 0.37 Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 2/65 (3%) Frame = -1 Query: 386 IYKVQTQCYEDDKLMKLFPEIIRSLYDQDVLAEDTILLW--FRKGSNQKGRQSFVKALEP 213 +Y +Q ++ L +LYD+DV+ E+ W + + Q+G+ +K++ Sbjct: 1327 LYALQALVVTLEQPANLLRMFFDALYDEDVVKEEAFYSWESSKDPAEQQGKGVALKSVTA 1386 Query: 212 FVKWL 198 F KWL Sbjct: 1387 FFKWL 1391
>IF4G1_MOUSE (Q6NZJ6) Eukaryotic translation initiation factor 4 gamma 1| (eIF-4-gamma 1) (eIF-4G1) (eIF-4G 1) Length = 1600 Score = 31.6 bits (70), Expect = 0.48 Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 2/65 (3%) Frame = -1 Query: 386 IYKVQTQCYEDDKLMKLFPEIIRSLYDQDVLAEDTILLW--FRKGSNQKGRQSFVKALEP 213 +Y +Q ++ L +LYD+DV+ ED W + + Q+G+ +K++ Sbjct: 1525 LYALQALVVTLEQPANLLRMFFDALYDEDVVKEDAFYSWESSKDPAEQQGKGVALKSVTA 1584 Query: 212 FVKWL 198 F WL Sbjct: 1585 FFNWL 1589
>IF5_DROME (Q9VXK6) Eukaryotic translation initiation factor 5 (eIF-5)| Length = 464 Score = 30.0 bits (66), Expect = 1.4 Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 4/54 (7%) Frame = -1 Query: 347 LMKLFPEIIRSLYDQDVLAEDTILLWFRKGSNQKGRQSFVKALE----PFVKWL 198 LM I + YD D+L E IL W +K S + ++ + PFV WL Sbjct: 352 LMSKVAGIFKLFYDLDILDEAVILEWAQKVSKRHVSKNIAAEIHEKAMPFVLWL 405
>NADE_MYCLE (Q9CBZ6) Glutamine-dependent NAD(+) synthetase (EC 6.3.5.1) (NAD(+)| synthase [glutamine-hydrolyzing]) Length = 680 Score = 28.9 bits (63), Expect = 3.1 Identities = 12/38 (31%), Positives = 24/38 (63%), Gaps = 1/38 (2%) Frame = -1 Query: 386 IYKVQTQCYEDDKLMKLFPEIIRSLYD-QDVLAEDTIL 276 + ++ QC++D + +FPE+ S Y +D+L +D +L Sbjct: 33 VLRLARQCHDDGVAVAVFPELTLSGYSIEDILLQDLLL 70
>SIL1_DEBHA (Q6BTV5) Nucleotide exchange factor SIL1 precursor| Length = 427 Score = 28.1 bits (61), Expect = 5.3 Identities = 14/49 (28%), Positives = 22/49 (44%) Frame = -1 Query: 314 LYDQDVLAEDTILLWFRKGSNQKGRQSFVKALEPFVKWLXXXXXXX*RG 168 L D V +ED L+F K S + +K + F++WL +G Sbjct: 338 LADSGVASEDQFKLYFNKLSEVHSQDKSLKPSKAFMEWLSKEAELRSKG 386
>NADE_MYCTU (P0A5L6) Glutamine-dependent NAD(+) synthetase (EC 6.3.5.1) (NAD(+)| synthase [glutamine-hydrolyzing]) Length = 679 Score = 27.7 bits (60), Expect = 6.9 Identities = 12/31 (38%), Positives = 21/31 (67%), Gaps = 1/31 (3%) Frame = -1 Query: 365 CYEDDKLMKLFPEIIRSLYD-QDVLAEDTIL 276 C++D + +FPE+ S Y +DVL +D++L Sbjct: 40 CHDDGAALAVFPELTLSGYSIEDVLLQDSLL 70
>NADE_MYCBO (P0A5L7) Glutamine-dependent NAD(+) synthetase (EC 6.3.5.1) (NAD(+)| synthase [glutamine-hydrolyzing]) Length = 679 Score = 27.7 bits (60), Expect = 6.9 Identities = 12/31 (38%), Positives = 21/31 (67%), Gaps = 1/31 (3%) Frame = -1 Query: 365 CYEDDKLMKLFPEIIRSLYD-QDVLAEDTIL 276 C++D + +FPE+ S Y +DVL +D++L Sbjct: 40 CHDDGAALAVFPELTLSGYSIEDVLLQDSLL 70
>PPCK_BRUSU (Q8FY05) Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49) (PEP| carboxykinase) (Phosphoenolpyruvate carboxylase) (PEPCK) Length = 536 Score = 27.7 bits (60), Expect = 6.9 Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 5/52 (9%) Frame = +3 Query: 171 SLFFLLCLLKPFDERLQSFHER-----LPSFLV*TLAEPKKYGIFSEDILII 311 SLF L++P E L S+ LPSF A+P++YG+ +E ++ + Sbjct: 134 SLFIRNLLIRPSQEALASYVPEMTIIDLPSFK----ADPERYGVRTETVIAV 181
>PPCK_BRUME (Q8YE41) Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49) (PEP| carboxykinase) (Phosphoenolpyruvate carboxylase) (PEPCK) Length = 536 Score = 27.7 bits (60), Expect = 6.9 Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 5/52 (9%) Frame = +3 Query: 171 SLFFLLCLLKPFDERLQSFHER-----LPSFLV*TLAEPKKYGIFSEDILII 311 SLF L++P E L S+ LPSF A+P++YG+ +E ++ + Sbjct: 134 SLFIRNLLIRPSQEALASYVPEMTIIDLPSFK----ADPERYGVRTETVIAV 181
>TTC8_HUMAN (Q8TAM2) Tetratricopeptide repeat protein 8 (TPR repeat protein 8)| (Bardet-Biedl syndrome 8 protein) Length = 531 Score = 27.3 bits (59), Expect = 9.1 Identities = 12/40 (30%), Positives = 21/40 (52%) Frame = -3 Query: 156 FKMSISLYPMFVEAVDITFYFSHVSIAVICCRLRHYCTRI 37 F+ ++SL EA D+ + HV++ + L H C R+ Sbjct: 399 FERALSLAENEEEAADVWYNLGHVAVGIGDTNLAHQCFRL 438
>Y1060_SYNY3 (P72637) UPF0182 protein sll1060| Length = 1032 Score = 27.3 bits (59), Expect = 9.1 Identities = 12/26 (46%), Positives = 17/26 (65%) Frame = -1 Query: 332 PEIIRSLYDQDVLAEDTILLWFRKGS 255 PE I +L +QD + + I LW R+GS Sbjct: 922 PEQIEALVNQDPVISERISLWNRRGS 947
>LY41_SYNY3 (P74269) Putative AIPM/Hcit synthase family transferase sll1564 (EC| 2.3.3.-) Length = 547 Score = 27.3 bits (59), Expect = 9.1 Identities = 16/40 (40%), Positives = 19/40 (47%) Frame = +2 Query: 251 GLNPCGTKEVWYLQRGHLDHTEIL*FQGTASSTYRPHNTV 370 G NP + W LQ L+ EI+ F ST RPH V Sbjct: 52 GANPKDVQFFWQLQEEPLEQAEIVAF----CSTRRPHKAV 87 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 55,432,724 Number of Sequences: 219361 Number of extensions: 1028566 Number of successful extensions: 2298 Number of sequences better than 10.0: 29 Number of HSP's better than 10.0 without gapping: 2269 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2298 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 1380984984 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
