>PVG4_SCHPO (Q9HGP0) MADS-box transcription factor pvg4 (Pyruvylated|
           Gal-beta-1,3-epitope synthesis protein 4) (PvGal
           synthesis protein 4) (MADS-box transcription factor 2)
          Length = 372

 Score = 39.7 bits (91), Expect = 0.009
 Identities = 21/62 (33%), Positives = 26/62 (41%)
 Frame = -3

Query: 448 NPQCCFQNWCERRLPDGEHVGGCDAAVPWRLHEPDRRPEHLPPHVCSCKPHVPDGEGPQT 269
           NPQ   Q++C        HV  C    P + H P  RP H PPH     PH  +   P  
Sbjct: 140 NPQV--QSYCRPEPLSSNHVRSCPPFPPTQHHHPHTRPPHHPPH-----PHFHNNNYPPP 192

Query: 268 FC 263
           +C
Sbjct: 193 YC 194

>RPOC1_ADICA (Q85FM8) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (PEP)|
           (Plastid-encoded RNA polymerase beta' subunit) (RNA
           polymerase beta' subunit)
          Length = 694

 Score = 32.3 bits (72), Expect = 1.4
 Identities = 16/48 (33%), Positives = 27/48 (56%)
 Frame = -3

Query: 475 WQRTRWAFCNPQCCFQNWCERRLPDGEHVGGCDAAVPWRLHEPDRRPE 332
           +Q+ R    +P+   ++W ER LP+G+ +G  D   P+ LH    +PE
Sbjct: 7   YQQLRIGLASPEQ-IRSWAERELPNGDVIGQVDQ--PYTLHYKTHKPE 51

>YRAO_BACSU (O05407) Hypothetical protein yraO|
          Length = 438

 Score = 32.0 bits (71), Expect = 1.8
 Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 8/71 (11%)
 Frame = -1

Query: 480 RFGSGHGGPFAIHNVVFRIGVRGGYLT--------VNTLVAAMLPFLGDFMSLTGALSTF 325
           R     G    +  +VF  GV  G L+          +L++ +   +G F  +  AL++ 
Sbjct: 284 RIAEHSGNAITVVLLVFSAGVFAGILSGTKMVDAIAGSLISIIPSSMGGFFPVIVALTSI 343

Query: 324 PLTFVLANHMY 292
           P TFVL+N  Y
Sbjct: 344 PFTFVLSNDAY 354

>RPOC1_CHAGL (Q8MA11) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (PEP)|
           (Plastid-encoded RNA polymerase beta' subunit) (RNA
           polymerase beta' subunit)
          Length = 661

 Score = 32.0 bits (71), Expect = 1.8
 Identities = 15/33 (45%), Positives = 19/33 (57%)
 Frame = -3

Query: 430 QNWCERRLPDGEHVGGCDAAVPWRLHEPDRRPE 332
           +NW ER LP+GE VG      P+ LH    +PE
Sbjct: 21  RNWAERTLPNGEIVG--KVTKPYTLHYNSHKPE 51

>NUOM_BUCAI (P57263) NADH-quinone oxidoreductase chain M (EC 1.6.99.5) (NADH|
           dehydrogenase I, chain M) (NDH-1, chain M)
          Length = 505

 Score = 31.6 bits (70), Expect = 2.4
 Identities = 23/77 (29%), Positives = 37/77 (48%)
 Frame = -1

Query: 534 TVIALHIFASPMYEYLDTRFGSGHGGPFAIHNVVFRIGVRGGYLTVNTLVAAMLPFLGDF 355
           TV AL I +  +Y+   T+  S  GG ++   + +  G    +   N  V     F+G+F
Sbjct: 350 TVAALCILSGQIYKRFKTQDMSKMGGLWSC--IYWIPGFSLFFSLANLGVPGTGNFIGEF 407

Query: 354 MSLTGALSTFPLTFVLA 304
           + L+G    FPL  +LA
Sbjct: 408 LILSGVFEVFPLVSILA 424

>RPOC1_MARPO (P06273) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (PEP)|
           (Plastid-encoded RNA polymerase beta' subunit) (RNA
           polymerase beta' subunit)
          Length = 684

 Score = 31.6 bits (70), Expect = 2.4
 Identities = 15/33 (45%), Positives = 19/33 (57%)
 Frame = -3

Query: 430 QNWCERRLPDGEHVGGCDAAVPWRLHEPDRRPE 332
           +NW ER LP+GE VG      P+ LH    +PE
Sbjct: 21  RNWAERVLPNGEIVG--QVTKPYTLHYKTHKPE 51

>RPOC1_ZYGCR (Q32RG1) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (PEP)|
           (Plastid-encoded RNA polymerase beta' subunit) (RNA
           polymerase beta' subunit)
          Length = 715

 Score = 31.2 bits (69), Expect = 3.1
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = -3

Query: 430 QNWCERRLPDGEHVGGCDAAVPWRLHEPDRRPE 332
           ++W ERRLP+GE +G    + P+ +H    +PE
Sbjct: 21  RSWAERRLPNGELIG--RVSKPYTIHYQTHKPE 51

>MRP2_RABIT (Q28689) Canalicular multispecific organic anion transporter 1|
            (ATP-binding cassette sub-family C member 2) (Multidrug
            resistance-associated protein 2) (Canalicular multidrug
            resistance protein) (Epithelial basolateral chloride
            conductance reg
          Length = 1564

 Score = 30.4 bits (67), Expect = 5.2
 Identities = 11/24 (45%), Positives = 18/24 (75%)
 Frame = -2

Query: 203  PQSLRSGLSCLIPVLTTYLLICEA 132
            PQSLRS + C + +++T ++IC A
Sbjct: 1094 PQSLRSWMMCFLAIISTLIMICMA 1117

>UNC47_CAEEL (P34579) Vesicular GABA transporter (Uncoordinated protein 47)|
           (Protein unc-47)
          Length = 486

 Score = 30.4 bits (67), Expect = 5.2
 Identities = 31/141 (21%), Positives = 60/141 (42%), Gaps = 12/141 (8%)
 Frame = -1

Query: 639 MGYWAYGSSTSSYLLNSVHGPAWIKVVANFSAFLQTVIALHIFASPMYE----------- 493
           +G+  +G  T   + NS+   ++ K++ N    +  V AL  +  P Y            
Sbjct: 318 LGFLTFGELTQEEISNSLPNQSF-KILVNL---ILVVKALLSYPLPFYAAVQLLKNNLFL 373

Query: 492 -YLDTRFGSGHGGPFAIHNVVFRIGVRGGYLTVNTLVAAMLPFLGDFMSLTGALSTFPLT 316
            Y  T F S +    ++    + + +R   +     VA  +P+L + M L G ++   L+
Sbjct: 374 GYPQTPFTSCYSPDKSLRE--WAVTLRIILVLFTLFVALSVPYLVELMGLVGNITGTMLS 431

Query: 315 FVLANHMYLMVKGPKLSAFQK 253
           F+     +L +K   L+ F+K
Sbjct: 432 FIWPALFHLYIKEKTLNNFEK 452

>TBX2_MOUSE (Q60707) T-box transcription factor TBX2 (T-box protein 2)|
          Length = 701

 Score = 30.4 bits (67), Expect = 5.2
 Identities = 15/33 (45%), Positives = 18/33 (54%)
 Frame = -3

Query: 373 AVPWRLHEPDRRPEHLPPHVCSCKPHVPDGEGP 275
           A P RL EP+R  E   P  CS +P    G+GP
Sbjct: 374 ASPARLTEPERSRERRSPERCSKEPTEGGGDGP 406

>MRP2_HUMAN (Q92887) Canalicular multispecific organic anion transporter 1|
            (ATP-binding cassette sub-family C member 2) (Multidrug
            resistance-associated protein 2) (Canalicular multidrug
            resistance protein)
          Length = 1545

 Score = 30.4 bits (67), Expect = 5.2
 Identities = 11/24 (45%), Positives = 19/24 (79%)
 Frame = -2

Query: 203  PQSLRSGLSCLIPVLTTYLLICEA 132
            PQSLRS ++C + +++T ++IC A
Sbjct: 1096 PQSLRSWITCFLGIISTLVMICMA 1119

>PANK1_HUMAN (Q8TE04) Pantothenate kinase 1 (EC 2.7.1.33) (Pantothenic acid|
           kinase 1) (hPanK1) (hPanK)
          Length = 598

 Score = 30.4 bits (67), Expect = 5.2
 Identities = 23/59 (38%), Positives = 24/59 (40%), Gaps = 2/59 (3%)
 Frame = -3

Query: 418 ERRLPD--GEHVGGCDAAVPWRLHEPDRRPEHLPPHVCSCKPHVPDGEGPQTFCLSERL 248
           ER +P   G  VG   AAV   LH     P   PPHVCS  P       PQ   L   L
Sbjct: 146 ERSVPHSPGAPVGTSAAAVNGLLHNGFHPPPVQPPHVCSRGPVGGSDAAPQRLPLLPEL 204

>YYBF_BACSU (P37498) Hypothetical transport protein yybF|
          Length = 404

 Score = 30.0 bits (66), Expect = 6.9
 Identities = 40/162 (24%), Positives = 72/162 (44%), Gaps = 18/162 (11%)
 Frame = -1

Query: 657 LYAVTFMGYWAYGSSTS--SYLLNSVHGPAWIKVVANFSAFLQTVIALHIFASPMYEYLD 484
           L+++  +G+   GS+ +  +Y++  + GP +    A FS+++  V+ + IF+S     + 
Sbjct: 217 LFSLFLIGFLLLGSNVALFNYIVYVLLGPPYSLNKA-FSSWIFIVMIVGIFSSSFIGRMV 275

Query: 483 TRFGSGHGGPFAIHNVVFRIGVRGGYLTVNTLVAAMLP----FLGDFMSLTGALSTFPLT 316
            R+G     P  +   +F I + G   T+N ++A  +     F   F       S++   
Sbjct: 276 DRYGY----PKILVMNIF-IVIAGALFTINNMLAVKILGIALFTFGFFGGHSVASSWVGR 330

Query: 315 FVL-----ANHMYLM-------VKGPKLSAFQKGWHWLNVVG 226
             L     A+ +YL        V G     F  G+HWL VVG
Sbjct: 331 RALHNKAQASSLYLFFYYAGSSVFGTIGGLFWSGFHWLGVVG 372

>PPO_VITVI (P43311) Polyphenol oxidase, chloroplast precursor (EC 1.10.3.1)|
           (PPO) (Catechol oxidase)
          Length = 607

 Score = 29.6 bits (65), Expect = 9.0
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 5/47 (10%)
 Frame = -3

Query: 406 PDGEHVGGCDAAVPWRLHEPDRRPEHLPPHVC-----SCKPHVPDGE 281
           PDG ++    A+ P  L++  R  +HLPP V        +P +PD E
Sbjct: 250 PDGMYMPTIYASSPSSLYDEKRNAKHLPPTVIDLDYDGTEPTIPDDE 296

>NU4M_ASPAM (P03913) NADH-ubiquinone oxidoreductase chain 4 (EC 1.6.5.3) (NADH|
           dehydrogenase subunit 4)
          Length = 488

 Score = 29.6 bits (65), Expect = 9.0
 Identities = 18/51 (35%), Positives = 26/51 (50%)
 Frame = -1

Query: 453 FAIHNVVFRIGVRGGYLTVNTLVAAMLPFLGDFMSLTGALSTFPLTFVLAN 301
           F++   +  +G  G  LT+N        F+G+FMSL G     PL  VLA+
Sbjct: 371 FSVLFFILSLGNSGTPLTLN--------FIGEFMSLYGVFERMPLLGVLAS 413

>RPOC1_PHYPA (P60288) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (PEP)|
           (Plastid-encoded RNA polymerase beta' subunit) (RNA
           polymerase beta' subunit)
          Length = 679

 Score = 29.6 bits (65), Expect = 9.0
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -3

Query: 430 QNWCERRLPDGEHVGGCDAAVPWRLHEPDRRPE 332
           ++W ER LP+GE VG      P+ LH    +PE
Sbjct: 21  RSWAERVLPNGEIVG--QVTKPYTLHYKTHKPE 51


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 99,484,538
Number of Sequences: 219361
Number of extensions: 2129587
Number of successful extensions: 5427
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 5214
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5419
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6769072002
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)