| Clone Name | rbaal32l17 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_507377.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1699_E05.22-1 mRNA Length = 1264 Score = 466 bits (235), Expect = e-128 Identities = 427/491 (86%) Strand = Plus / Minus Query: 290 gcagcctgtagcatttccacaataagtgtcttaacatcctttctgtcttgagcacgccta 349 ||||| || |||||||||||||||||||||||||||||||| ||||| || ||||||||| Sbjct: 1071 gcagcttggagcatttccacaataagtgtcttaacatccttcctgtcctgtgcacgccta 1012 Query: 350 gggaagggaattcgcagcttcagaacagttccgtcgtaaccagccttcacattgataccg 409 |||||||| || ||||||||||||||| |||| || || || ||||||||||||| ||| Sbjct: 1011 gggaaggggatacgcagcttcagaacacttccatcatagcccgccttcacattgaaacca 952 Query: 410 aggctatccacgtccacaatagaagcaaaatccaccttaacagaggttgagtgttgcaca 469 || |||||||| || | || ||||||| |||||||| |||| |||||||| ||||||| Sbjct: 951 agactatccacatcaagcatgtaagcaaagtccaccttgacagtggttgagtattgcaca 892 Query: 470 atgagctttgtatcatcagcatgatccttgttcatgtggcctgcaataggagtggagaac 529 ||||||||||||||||||| ||||||||| |||||||||| | |||||| || ||||| Sbjct: 891 atgagctttgtatcatcagaatgatccttattcatgtggctcgtaataggggttgagaat 832 Query: 530 tgagatatgggatccacttttgcttccttgaactcagctgcactaaattctccagagcca 589 |||||||| || ||||||||||| |||||||||||||| ||||| ||||||||||| ||| Sbjct: 831 tgagatattgggtccacttttgcctccttgaactcagcagcactgaattctccagaacca 772 Query: 590 aggatagctgttgcaaccccagatacgtaacgtacagcttttggtttgatgtgcagaaaa 649 ||||| || |||||||||||||| || || || || |||||||| ||||||||||||||| Sbjct: 771 aggatggcagttgcaaccccagacacatatcgcacggcttttggcttgatgtgcagaaaa 712 Query: 650 cggaagtcaccaaagtcaacccaaaaggcctcagggtgtctccgtaaatatgcagttctt 709 |||||||||||||| ||||||||||| |||||||| ||||| ||||| |||||| ||| | Sbjct: 711 cggaagtcaccaaaatcaacccaaaatgcctcaggatgtcttcgtaagtatgcacttcgt 652 Query: 710 acggcatctttttcttcgtcgggaacaggtatagcatcgccatatacagtgattacagta 769 || ||||||||||||| ||| | ||||||| | ||||| ||||||||||| || |||||| Sbjct: 651 actgcatctttttcttggtctgaaacaggtgtggcatcaccatatacagtaatcacagta 592 Query: 770 tctggtctgtc 780 |||| |||||| Sbjct: 591 tctgttctgtc 581
>ref|XM_478802.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1253 Score = 466 bits (235), Expect = e-128 Identities = 427/491 (86%) Strand = Plus / Minus Query: 290 gcagcctgtagcatttccacaataagtgtcttaacatcctttctgtcttgagcacgccta 349 ||||| || |||||||||||||||||||||||||||||||| ||||| || ||||||||| Sbjct: 1056 gcagcttggagcatttccacaataagtgtcttaacatccttcctgtcctgtgcacgccta 997 Query: 350 gggaagggaattcgcagcttcagaacagttccgtcgtaaccagccttcacattgataccg 409 |||||||| || ||||||||||||||| |||| || || || ||||||||||||| ||| Sbjct: 996 gggaaggggatacgcagcttcagaacacttccatcatagcccgccttcacattgaaacca 937 Query: 410 aggctatccacgtccacaatagaagcaaaatccaccttaacagaggttgagtgttgcaca 469 || |||||||| || | || ||||||| |||||||| |||| |||||||| ||||||| Sbjct: 936 agactatccacatcaagcatgtaagcaaagtccaccttgacagtggttgagtattgcaca 877 Query: 470 atgagctttgtatcatcagcatgatccttgttcatgtggcctgcaataggagtggagaac 529 ||||||||||||||||||| ||||||||| |||||||||| | |||||| || ||||| Sbjct: 876 atgagctttgtatcatcagaatgatccttattcatgtggctcgtaataggggttgagaat 817 Query: 530 tgagatatgggatccacttttgcttccttgaactcagctgcactaaattctccagagcca 589 |||||||| || ||||||||||| |||||||||||||| ||||| ||||||||||| ||| Sbjct: 816 tgagatattgggtccacttttgcctccttgaactcagcagcactgaattctccagaacca 757 Query: 590 aggatagctgttgcaaccccagatacgtaacgtacagcttttggtttgatgtgcagaaaa 649 ||||| || |||||||||||||| || || || || |||||||| ||||||||||||||| Sbjct: 756 aggatggcagttgcaaccccagacacatatcgcacggcttttggcttgatgtgcagaaaa 697 Query: 650 cggaagtcaccaaagtcaacccaaaaggcctcagggtgtctccgtaaatatgcagttctt 709 |||||||||||||| ||||||||||| |||||||| ||||| ||||| |||||| ||| | Sbjct: 696 cggaagtcaccaaaatcaacccaaaatgcctcaggatgtcttcgtaagtatgcacttcgt 637 Query: 710 acggcatctttttcttcgtcgggaacaggtatagcatcgccatatacagtgattacagta 769 || ||||||||||||| ||| | ||||||| | ||||| ||||||||||| || |||||| Sbjct: 636 actgcatctttttcttggtctgaaacaggtgtggcatcaccatatacagtaatcacagta 577 Query: 770 tctggtctgtc 780 |||| |||||| Sbjct: 576 tctgttctgtc 566
>ref|XM_506422.2| PREDICTED Oryza sativa (japonica cultivar-group), OJ1699_E05.22-1 mRNA Length = 1421 Score = 466 bits (235), Expect = e-128 Identities = 427/491 (86%) Strand = Plus / Minus Query: 290 gcagcctgtagcatttccacaataagtgtcttaacatcctttctgtcttgagcacgccta 349 ||||| || |||||||||||||||||||||||||||||||| ||||| || ||||||||| Sbjct: 1099 gcagcttggagcatttccacaataagtgtcttaacatccttcctgtcctgtgcacgccta 1040 Query: 350 gggaagggaattcgcagcttcagaacagttccgtcgtaaccagccttcacattgataccg 409 |||||||| || ||||||||||||||| |||| || || || ||||||||||||| ||| Sbjct: 1039 gggaaggggatacgcagcttcagaacacttccatcatagcccgccttcacattgaaacca 980 Query: 410 aggctatccacgtccacaatagaagcaaaatccaccttaacagaggttgagtgttgcaca 469 || |||||||| || | || ||||||| |||||||| |||| |||||||| ||||||| Sbjct: 979 agactatccacatcaagcatgtaagcaaagtccaccttgacagtggttgagtattgcaca 920 Query: 470 atgagctttgtatcatcagcatgatccttgttcatgtggcctgcaataggagtggagaac 529 ||||||||||||||||||| ||||||||| |||||||||| | |||||| || ||||| Sbjct: 919 atgagctttgtatcatcagaatgatccttattcatgtggctcgtaataggggttgagaat 860 Query: 530 tgagatatgggatccacttttgcttccttgaactcagctgcactaaattctccagagcca 589 |||||||| || ||||||||||| |||||||||||||| ||||| ||||||||||| ||| Sbjct: 859 tgagatattgggtccacttttgcctccttgaactcagcagcactgaattctccagaacca 800 Query: 590 aggatagctgttgcaaccccagatacgtaacgtacagcttttggtttgatgtgcagaaaa 649 ||||| || |||||||||||||| || || || || |||||||| ||||||||||||||| Sbjct: 799 aggatggcagttgcaaccccagacacatatcgcacggcttttggcttgatgtgcagaaaa 740 Query: 650 cggaagtcaccaaagtcaacccaaaaggcctcagggtgtctccgtaaatatgcagttctt 709 |||||||||||||| ||||||||||| |||||||| ||||| ||||| |||||| ||| | Sbjct: 739 cggaagtcaccaaaatcaacccaaaatgcctcaggatgtcttcgtaagtatgcacttcgt 680 Query: 710 acggcatctttttcttcgtcgggaacaggtatagcatcgccatatacagtgattacagta 769 || ||||||||||||| ||| | ||||||| | ||||| ||||||||||| || |||||| Sbjct: 679 actgcatctttttcttggtctgaaacaggtgtggcatcaccatatacagtaatcacagta 620 Query: 770 tctggtctgtc 780 |||| |||||| Sbjct: 619 tctgttctgtc 609
>dbj|AK104308.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-012-H04, full insert sequence Length = 1253 Score = 466 bits (235), Expect = e-128 Identities = 427/491 (86%) Strand = Plus / Minus Query: 290 gcagcctgtagcatttccacaataagtgtcttaacatcctttctgtcttgagcacgccta 349 ||||| || |||||||||||||||||||||||||||||||| ||||| || ||||||||| Sbjct: 1056 gcagcttggagcatttccacaataagtgtcttaacatccttcctgtcctgtgcacgccta 997 Query: 350 gggaagggaattcgcagcttcagaacagttccgtcgtaaccagccttcacattgataccg 409 |||||||| || ||||||||||||||| |||| || || || ||||||||||||| ||| Sbjct: 996 gggaaggggatacgcagcttcagaacacttccatcatagcccgccttcacattgaaacca 937 Query: 410 aggctatccacgtccacaatagaagcaaaatccaccttaacagaggttgagtgttgcaca 469 || |||||||| || | || ||||||| |||||||| |||| |||||||| ||||||| Sbjct: 936 agactatccacatcaagcatgtaagcaaagtccaccttgacagtggttgagtattgcaca 877 Query: 470 atgagctttgtatcatcagcatgatccttgttcatgtggcctgcaataggagtggagaac 529 ||||||||||||||||||| ||||||||| |||||||||| | |||||| || ||||| Sbjct: 876 atgagctttgtatcatcagaatgatccttattcatgtggctcgtaataggggttgagaat 817 Query: 530 tgagatatgggatccacttttgcttccttgaactcagctgcactaaattctccagagcca 589 |||||||| || ||||||||||| |||||||||||||| ||||| ||||||||||| ||| Sbjct: 816 tgagatattgggtccacttttgcctccttgaactcagcagcactgaattctccagaacca 757 Query: 590 aggatagctgttgcaaccccagatacgtaacgtacagcttttggtttgatgtgcagaaaa 649 ||||| || |||||||||||||| || || || || |||||||| ||||||||||||||| Sbjct: 756 aggatggcagttgcaaccccagacacatatcgcacggcttttggcttgatgtgcagaaaa 697 Query: 650 cggaagtcaccaaagtcaacccaaaaggcctcagggtgtctccgtaaatatgcagttctt 709 |||||||||||||| ||||||||||| |||||||| ||||| ||||| |||||| ||| | Sbjct: 696 cggaagtcaccaaaatcaacccaaaatgcctcaggatgtcttcgtaagtatgcacttcgt 637 Query: 710 acggcatctttttcttcgtcgggaacaggtatagcatcgccatatacagtgattacagta 769 || ||||||||||||| ||| | ||||||| | ||||| ||||||||||| || |||||| Sbjct: 636 actgcatctttttcttggtctgaaacaggtgtggcatcaccatatacagtaatcacagta 577 Query: 770 tctggtctgtc 780 |||| |||||| Sbjct: 576 tctgttctgtc 566
>dbj|AK104154.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-210-B07, full insert sequence Length = 1263 Score = 466 bits (235), Expect = e-128 Identities = 427/491 (86%) Strand = Plus / Minus Query: 290 gcagcctgtagcatttccacaataagtgtcttaacatcctttctgtcttgagcacgccta 349 ||||| || |||||||||||||||||||||||||||||||| ||||| || ||||||||| Sbjct: 1070 gcagcttggagcatttccacaataagtgtcttaacatccttcctgtcctgtgcacgccta 1011 Query: 350 gggaagggaattcgcagcttcagaacagttccgtcgtaaccagccttcacattgataccg 409 |||||||| || ||||||||||||||| |||| || || || ||||||||||||| ||| Sbjct: 1010 gggaaggggatacgcagcttcagaacacttccatcatagcccgccttcacattgaaacca 951 Query: 410 aggctatccacgtccacaatagaagcaaaatccaccttaacagaggttgagtgttgcaca 469 || |||||||| || | || ||||||| |||||||| |||| |||||||| ||||||| Sbjct: 950 agactatccacatcaagcatgtaagcaaagtccaccttgacagtggttgagtattgcaca 891 Query: 470 atgagctttgtatcatcagcatgatccttgttcatgtggcctgcaataggagtggagaac 529 ||||||||||||||||||| ||||||||| |||||||||| | |||||| || ||||| Sbjct: 890 atgagctttgtatcatcagaatgatccttattcatgtggctcgtaataggggttgagaat 831 Query: 530 tgagatatgggatccacttttgcttccttgaactcagctgcactaaattctccagagcca 589 |||||||| || ||||||||||| |||||||||||||| ||||| ||||||||||| ||| Sbjct: 830 tgagatattgggtccacttttgcctccttgaactcagcagcactgaattctccagaacca 771 Query: 590 aggatagctgttgcaaccccagatacgtaacgtacagcttttggtttgatgtgcagaaaa 649 ||||| || |||||||||||||| || || || || |||||||| ||||||||||||||| Sbjct: 770 aggatggcagttgcaaccccagacacatatcgcacggcttttggcttgatgtgcagaaaa 711 Query: 650 cggaagtcaccaaagtcaacccaaaaggcctcagggtgtctccgtaaatatgcagttctt 709 |||||||||||||| ||||||||||| |||||||| ||||| ||||| |||||| ||| | Sbjct: 710 cggaagtcaccaaaatcaacccaaaatgcctcaggatgtcttcgtaagtatgcacttcgt 651 Query: 710 acggcatctttttcttcgtcgggaacaggtatagcatcgccatatacagtgattacagta 769 || ||||||||||||| ||| | ||||||| | ||||| ||||||||||| || |||||| Sbjct: 650 actgcatctttttcttggtctgaaacaggtgtggcatcaccatatacagtaatcacagta 591 Query: 770 tctggtctgtc 780 |||| |||||| Sbjct: 590 tctgttctgtc 580
>dbj|AK072835.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023134F17, full insert sequence Length = 1421 Score = 466 bits (235), Expect = e-128 Identities = 427/491 (86%) Strand = Plus / Minus Query: 290 gcagcctgtagcatttccacaataagtgtcttaacatcctttctgtcttgagcacgccta 349 ||||| || |||||||||||||||||||||||||||||||| ||||| || ||||||||| Sbjct: 1099 gcagcttggagcatttccacaataagtgtcttaacatccttcctgtcctgtgcacgccta 1040 Query: 350 gggaagggaattcgcagcttcagaacagttccgtcgtaaccagccttcacattgataccg 409 |||||||| || ||||||||||||||| |||| || || || ||||||||||||| ||| Sbjct: 1039 gggaaggggatacgcagcttcagaacacttccatcatagcccgccttcacattgaaacca 980 Query: 410 aggctatccacgtccacaatagaagcaaaatccaccttaacagaggttgagtgttgcaca 469 || |||||||| || | || ||||||| |||||||| |||| |||||||| ||||||| Sbjct: 979 agactatccacatcaagcatgtaagcaaagtccaccttgacagtggttgagtattgcaca 920 Query: 470 atgagctttgtatcatcagcatgatccttgttcatgtggcctgcaataggagtggagaac 529 ||||||||||||||||||| ||||||||| |||||||||| | |||||| || ||||| Sbjct: 919 atgagctttgtatcatcagaatgatccttattcatgtggctcgtaataggggttgagaat 860 Query: 530 tgagatatgggatccacttttgcttccttgaactcagctgcactaaattctccagagcca 589 |||||||| || ||||||||||| |||||||||||||| ||||| ||||||||||| ||| Sbjct: 859 tgagatattgggtccacttttgcctccttgaactcagcagcactgaattctccagaacca 800 Query: 590 aggatagctgttgcaaccccagatacgtaacgtacagcttttggtttgatgtgcagaaaa 649 ||||| || |||||||||||||| || || || || |||||||| ||||||||||||||| Sbjct: 799 aggatggcagttgcaaccccagacacatatcgcacggcttttggcttgatgtgcagaaaa 740 Query: 650 cggaagtcaccaaagtcaacccaaaaggcctcagggtgtctccgtaaatatgcagttctt 709 |||||||||||||| ||||||||||| |||||||| ||||| ||||| |||||| ||| | Sbjct: 739 cggaagtcaccaaaatcaacccaaaatgcctcaggatgtcttcgtaagtatgcacttcgt 680 Query: 710 acggcatctttttcttcgtcgggaacaggtatagcatcgccatatacagtgattacagta 769 || ||||||||||||| ||| | ||||||| | ||||| ||||||||||| || |||||| Sbjct: 679 actgcatctttttcttggtctgaaacaggtgtggcatcaccatatacagtaatcacagta 620 Query: 770 tctggtctgtc 780 |||| |||||| Sbjct: 619 tctgttctgtc 609
>dbj|AK121296.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023110F21, full insert sequence Length = 3078 Score = 458 bits (231), Expect = e-125 Identities = 426/491 (86%) Strand = Plus / Minus Query: 290 gcagcctgtagcatttccacaataagtgtcttaacatcctttctgtcttgagcacgccta 349 ||||| || |||||||||||||||||||||||||||||||| ||||| || ||||||||| Sbjct: 2880 gcagcttggagcatttccacaataagtgtcttaacatccttcctgtcctgtgcacgccta 2821 Query: 350 gggaagggaattcgcagcttcagaacagttccgtcgtaaccagccttcacattgataccg 409 |||||||| || ||||||||||||||| |||| || || || ||| ||||||||| ||| Sbjct: 2820 gggaaggggatacgcagcttcagaacacttccatcatagcccgccctcacattgaaacca 2761 Query: 410 aggctatccacgtccacaatagaagcaaaatccaccttaacagaggttgagtgttgcaca 469 || |||||||| || | || ||||||| |||||||| |||| |||||||| ||||||| Sbjct: 2760 agactatccacatcaagcatgtaagcaaagtccaccttgacagtggttgagtattgcaca 2701 Query: 470 atgagctttgtatcatcagcatgatccttgttcatgtggcctgcaataggagtggagaac 529 ||||||||||||||||||| ||||||||| |||||||||| | |||||| || ||||| Sbjct: 2700 atgagctttgtatcatcagaatgatccttattcatgtggctcgtaataggggttgagaat 2641 Query: 530 tgagatatgggatccacttttgcttccttgaactcagctgcactaaattctccagagcca 589 |||||||| || ||||||||||| |||||||||||||| ||||| ||||||||||| ||| Sbjct: 2640 tgagatattgggtccacttttgcctccttgaactcagcagcactgaattctccagaacca 2581 Query: 590 aggatagctgttgcaaccccagatacgtaacgtacagcttttggtttgatgtgcagaaaa 649 ||||| || |||||||||||||| || || || || |||||||| ||||||||||||||| Sbjct: 2580 aggatggcagttgcaaccccagacacatatcgcacggcttttggcttgatgtgcagaaaa 2521 Query: 650 cggaagtcaccaaagtcaacccaaaaggcctcagggtgtctccgtaaatatgcagttctt 709 |||||||||||||| ||||||||||| |||||||| ||||| ||||| |||||| ||| | Sbjct: 2520 cggaagtcaccaaaatcaacccaaaatgcctcaggatgtcttcgtaagtatgcacttcgt 2461 Query: 710 acggcatctttttcttcgtcgggaacaggtatagcatcgccatatacagtgattacagta 769 || ||||||||||||| ||| | ||||||| | ||||| ||||||||||| || |||||| Sbjct: 2460 actgcatctttttcttggtctgaaacaggtgtggcatcaccatatacagtaatcacagta 2401 Query: 770 tctggtctgtc 780 |||| |||||| Sbjct: 2400 tctgttctgtc 2390
>gb|AY109869.1| Zea mays CL39903_1 mRNA sequence Length = 1027 Score = 373 bits (188), Expect = e-100 Identities = 414/491 (84%) Strand = Plus / Plus Query: 290 gcagcctgtagcatttccacaataagtgtcttaacatcctttctgtcttgagcacgccta 349 ||||| || |||||||||||||| ||||||||||||||||| |||||||| || | || Sbjct: 243 gcagcttggagcatttccacaattagtgtcttaacatccttcctgtcttgcgcctgtctt 302 Query: 350 gggaagggaattcgcagcttcagaacagttccgtcgtaaccagccttcacattgataccg 409 |||||||| |||| || |||||||||| |||| || ||||||||||||||||| | ||| Sbjct: 303 gggaaggggattctcaacttcagaacacttccatcataaccagccttcacattaaaacca 362 Query: 410 aggctatccacgtccacaatagaagcaaaatccaccttaacagaggttgagtgttgcaca 469 ||||| |||||||||| ||| |||||||||||||||| |||| || |||||||||||| Sbjct: 363 aggctgtccacgtccagcatataagcaaaatccaccttgacagtagtggagtgttgcaca 422 Query: 470 atgagctttgtatcatcagcatgatccttgttcatgtggcctgcaataggagtggagaac 529 |||||||||||||||| ||||||||||||||||| |||| || |||||||| ||||| Sbjct: 423 atgagctttgtatcattggcatgatccttgttcatatggcttgtgataggagttgagaat 482 Query: 530 tgagatatgggatccacttttgcttccttgaactcagctgcactaaattctccagagcca 589 |||||||| ||||| |||||||||||||| |||| || || | ||||||||||| ||| Sbjct: 483 tgagatattggatcaacttttgcttccttatactctgcaacattgaattctccagaacca 542 Query: 590 aggatagctgttgcaaccccagatacgtaacgtacagcttttggtttgatgtgcagaaaa 649 |||| ||| |||||||| |||||||| || || |||||||| |||||||||||||| ||| Sbjct: 543 aggagagcagttgcaacgccagatacatagcgcacagctttaggtttgatgtgcaggaaa 602 Query: 650 cggaagtcaccaaagtcaacccaaaaggcctcagggtgtctccgtaaatatgcagttctt 709 | ||||||||||||||||||||| || || |||||||| || |||| || ||| |||| Sbjct: 603 ctgaagtcaccaaagtcaacccagaaagcatcagggtgcctgcgtaggtaagcacttctc 662 Query: 710 acggcatctttttcttcgtcgggaacaggtatagcatcgccatatacagtgattacagta 769 || | ||| ||||||| | |||||| | ||| |||||||||||||||||||||||| Sbjct: 663 actgaatcnnnnncttcgtcagaaacaggaacagcgtcgccatatacagtgattacagta 722 Query: 770 tctggtctgtc 780 || | |||||| Sbjct: 723 tcagttctgtc 733
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 103 bits (52), Expect = 9e-19 Identities = 82/92 (89%) Strand = Plus / Plus Query: 579 ctccagagccaaggatagctgttgcaaccccagatacgtaacgtacagcttttggtttga 638 ||||||| |||||||| || |||||||||||||| || || || || |||||||| |||| Sbjct: 23143008 ctccagaaccaaggatggcagttgcaaccccagacacatatcgcacggcttttggcttga 23143067 Query: 639 tgtgcagaaaacggaagtcaccaaagtcaacc 670 ||||||||||||||||||||||||| |||||| Sbjct: 23143068 tgtgcagaaaacggaagtcaccaaaatcaacc 23143099 Score = 91.7 bits (46), Expect = 3e-15 Identities = 61/66 (92%) Strand = Plus / Plus Query: 444 ccttaacagaggttgagtgttgcacaatgagctttgtatcatcagcatgatccttgttca 503 |||| |||| |||||||| |||||||||||||||||||||||||| ||||||||| |||| Sbjct: 23142528 ccttgacagtggttgagtattgcacaatgagctttgtatcatcagaatgatccttattca 23142587 Query: 504 tgtggc 509 |||||| Sbjct: 23142588 tgtggc 23142593 Score = 69.9 bits (35), Expect = 1e-08 Identities = 59/67 (88%) Strand = Plus / Plus Query: 514 aataggagtggagaactgagatatgggatccacttttgcttccttgaactcagctgcact 573 |||||| || ||||| |||||||| || ||||||||||| |||||||||||||| ||||| Sbjct: 23142696 aataggggttgagaattgagatattgggtccacttttgcctccttgaactcagcagcact 23142755 Query: 574 aaattct 580 |||||| Sbjct: 23142756 gaattct 23142762 Score = 61.9 bits (31), Expect = 3e-06 Identities = 37/39 (94%) Strand = Plus / Plus Query: 290 gcagcctgtagcatttccacaataagtgtcttaacatcc 328 ||||| || |||||||||||||||||||||||||||||| Sbjct: 23140972 gcagcttggagcatttccacaataagtgtcttaacatcc 23141010 Score = 60.0 bits (30), Expect = 1e-05 Identities = 51/58 (87%) Strand = Plus / Plus Query: 668 acccaaaaggcctcagggtgtctccgtaaatatgcagttcttacggcatctttttctt 725 |||||||| |||||||| ||||| ||||| |||||| ||| ||| ||||||||||||| Sbjct: 23143184 acccaaaatgcctcaggatgtcttcgtaagtatgcacttcgtactgcatctttttctt 23143241 Score = 60.0 bits (30), Expect = 1e-05 Identities = 45/50 (90%) Strand = Plus / Plus Query: 332 ctgtcttgagcacgcctagggaagggaattcgcagcttcagaacagttcc 381 ||||| || ||||||||||||||||| || ||||||||||||||| |||| Sbjct: 23141160 ctgtcctgtgcacgcctagggaaggggatacgcagcttcagaacacttcc 23141209 Score = 46.1 bits (23), Expect = 0.17 Identities = 41/47 (87%) Strand = Plus / Plus Query: 734 acaggtatagcatcgccatatacagtgattacagtatctggtctgtc 780 |||||| | ||||| ||||||||||| || |||||||||| |||||| Sbjct: 23143374 acaggtgtggcatcaccatatacagtaatcacagtatctgttctgtc 23143420 Score = 44.1 bits (22), Expect = 0.69 Identities = 22/22 (100%) Strand = Plus / Minus Query: 227 cgccgccaccgccaccgccttc 248 |||||||||||||||||||||| Sbjct: 16956683 cgccgccaccgccaccgccttc 16956662
>dbj|AP003758.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1562_B11 Length = 112144 Score = 103 bits (52), Expect = 9e-19 Identities = 82/92 (89%) Strand = Plus / Plus Query: 579 ctccagagccaaggatagctgttgcaaccccagatacgtaacgtacagcttttggtttga 638 ||||||| |||||||| || |||||||||||||| || || || || |||||||| |||| Sbjct: 5922 ctccagaaccaaggatggcagttgcaaccccagacacatatcgcacggcttttggcttga 5981 Query: 639 tgtgcagaaaacggaagtcaccaaagtcaacc 670 ||||||||||||||||||||||||| |||||| Sbjct: 5982 tgtgcagaaaacggaagtcaccaaaatcaacc 6013 Score = 91.7 bits (46), Expect = 3e-15 Identities = 61/66 (92%) Strand = Plus / Plus Query: 444 ccttaacagaggttgagtgttgcacaatgagctttgtatcatcagcatgatccttgttca 503 |||| |||| |||||||| |||||||||||||||||||||||||| ||||||||| |||| Sbjct: 5442 ccttgacagtggttgagtattgcacaatgagctttgtatcatcagaatgatccttattca 5501 Query: 504 tgtggc 509 |||||| Sbjct: 5502 tgtggc 5507 Score = 69.9 bits (35), Expect = 1e-08 Identities = 59/67 (88%) Strand = Plus / Plus Query: 514 aataggagtggagaactgagatatgggatccacttttgcttccttgaactcagctgcact 573 |||||| || ||||| |||||||| || ||||||||||| |||||||||||||| ||||| Sbjct: 5610 aataggggttgagaattgagatattgggtccacttttgcctccttgaactcagcagcact 5669 Query: 574 aaattct 580 |||||| Sbjct: 5670 gaattct 5676 Score = 61.9 bits (31), Expect = 3e-06 Identities = 37/39 (94%) Strand = Plus / Plus Query: 290 gcagcctgtagcatttccacaataagtgtcttaacatcc 328 ||||| || |||||||||||||||||||||||||||||| Sbjct: 3886 gcagcttggagcatttccacaataagtgtcttaacatcc 3924 Score = 60.0 bits (30), Expect = 1e-05 Identities = 51/58 (87%) Strand = Plus / Plus Query: 668 acccaaaaggcctcagggtgtctccgtaaatatgcagttcttacggcatctttttctt 725 |||||||| |||||||| ||||| ||||| |||||| ||| ||| ||||||||||||| Sbjct: 6098 acccaaaatgcctcaggatgtcttcgtaagtatgcacttcgtactgcatctttttctt 6155 Score = 60.0 bits (30), Expect = 1e-05 Identities = 45/50 (90%) Strand = Plus / Plus Query: 332 ctgtcttgagcacgcctagggaagggaattcgcagcttcagaacagttcc 381 ||||| || ||||||||||||||||| || ||||||||||||||| |||| Sbjct: 4074 ctgtcctgtgcacgcctagggaaggggatacgcagcttcagaacacttcc 4123 Score = 46.1 bits (23), Expect = 0.17 Identities = 41/47 (87%) Strand = Plus / Plus Query: 734 acaggtatagcatcgccatatacagtgattacagtatctggtctgtc 780 |||||| | ||||| ||||||||||| || |||||||||| |||||| Sbjct: 6288 acaggtgtggcatcaccatatacagtaatcacagtatctgttctgtc 6334
>dbj|AP003845.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1699_E05 Length = 170666 Score = 103 bits (52), Expect = 9e-19 Identities = 82/92 (89%) Strand = Plus / Plus Query: 579 ctccagagccaaggatagctgttgcaaccccagatacgtaacgtacagcttttggtttga 638 ||||||| |||||||| || |||||||||||||| || || || || |||||||| |||| Sbjct: 87192 ctccagaaccaaggatggcagttgcaaccccagacacatatcgcacggcttttggcttga 87251 Query: 639 tgtgcagaaaacggaagtcaccaaagtcaacc 670 ||||||||||||||||||||||||| |||||| Sbjct: 87252 tgtgcagaaaacggaagtcaccaaaatcaacc 87283 Score = 91.7 bits (46), Expect = 3e-15 Identities = 61/66 (92%) Strand = Plus / Plus Query: 444 ccttaacagaggttgagtgttgcacaatgagctttgtatcatcagcatgatccttgttca 503 |||| |||| |||||||| |||||||||||||||||||||||||| ||||||||| |||| Sbjct: 86712 ccttgacagtggttgagtattgcacaatgagctttgtatcatcagaatgatccttattca 86771 Query: 504 tgtggc 509 |||||| Sbjct: 86772 tgtggc 86777 Score = 69.9 bits (35), Expect = 1e-08 Identities = 59/67 (88%) Strand = Plus / Plus Query: 514 aataggagtggagaactgagatatgggatccacttttgcttccttgaactcagctgcact 573 |||||| || ||||| |||||||| || ||||||||||| |||||||||||||| ||||| Sbjct: 86880 aataggggttgagaattgagatattgggtccacttttgcctccttgaactcagcagcact 86939 Query: 574 aaattct 580 |||||| Sbjct: 86940 gaattct 86946 Score = 61.9 bits (31), Expect = 3e-06 Identities = 37/39 (94%) Strand = Plus / Plus Query: 290 gcagcctgtagcatttccacaataagtgtcttaacatcc 328 ||||| || |||||||||||||||||||||||||||||| Sbjct: 85156 gcagcttggagcatttccacaataagtgtcttaacatcc 85194 Score = 60.0 bits (30), Expect = 1e-05 Identities = 51/58 (87%) Strand = Plus / Plus Query: 668 acccaaaaggcctcagggtgtctccgtaaatatgcagttcttacggcatctttttctt 725 |||||||| |||||||| ||||| ||||| |||||| ||| ||| ||||||||||||| Sbjct: 87368 acccaaaatgcctcaggatgtcttcgtaagtatgcacttcgtactgcatctttttctt 87425 Score = 60.0 bits (30), Expect = 1e-05 Identities = 45/50 (90%) Strand = Plus / Plus Query: 332 ctgtcttgagcacgcctagggaagggaattcgcagcttcagaacagttcc 381 ||||| || ||||||||||||||||| || ||||||||||||||| |||| Sbjct: 85344 ctgtcctgtgcacgcctagggaaggggatacgcagcttcagaacacttcc 85393 Score = 46.1 bits (23), Expect = 0.17 Identities = 41/47 (87%) Strand = Plus / Plus Query: 734 acaggtatagcatcgccatatacagtgattacagtatctggtctgtc 780 |||||| | ||||| ||||||||||| || |||||||||| |||||| Sbjct: 87558 acaggtgtggcatcaccatatacagtaatcacagtatctgttctgtc 87604
>gb|AF139187.1|AF139187 Pisum sativum root border cell-specific protein (BRD13) mRNA, complete cds Length = 1334 Score = 75.8 bits (38), Expect = 2e-10 Identities = 125/154 (81%) Strand = Plus / Minus Query: 522 tggagaactgagatatgggatccacttttgcttccttgaactcagctgcactaaattctc 581 |||| |||||||||||||||||||||||||| ||||||||| || ||||||| |||| Sbjct: 735 tggaaaactgagatatgggatccacttttgcagatttgaactcatctccactaaactctc 676 Query: 582 cagagccaaggatagctgttgcaaccccagatacgtaacgtacagcttttggtttgatgt 641 | || || | | |||||| ||||| || || ||| | |||||| ||||||||| ||| Sbjct: 675 ctgatcctaacaaagctgtagcaacacctgacacgaatcgtacaacttttggttcaatgc 616 Query: 642 gcagaaaacggaagtcaccaaagtcaacccaaaa 675 | | ||| |||||||| || |||||||||||||| Sbjct: 615 gtacaaatcggaagtctccgaagtcaacccaaaa 582
>gb|DQ268840.1| Solanum tuberosum clone 130E11 root border cell-specific protein-like protein mRNA, complete cds Length = 1252 Score = 71.9 bits (36), Expect = 3e-09 Identities = 66/76 (86%) Strand = Plus / Minus Query: 294 cctgtagcatttccacaataagtgtcttaacatcctttctgtcttgagcacgcctaggga 353 |||| |||||||| |||||||||| ||| ||||||||||||||| |||||| ||||||| Sbjct: 1027 cctgaagcatttcaacaataagtgccttcacatcctttctgtctacagcacgtctaggga 968 Query: 354 agggaattcgcagctt 369 | |||| ||| ||||| Sbjct: 967 atggaactcgaagctt 952 Score = 50.1 bits (25), Expect = 0.011 Identities = 34/37 (91%) Strand = Plus / Minus Query: 651 ggaagtcaccaaagtcaacccaaaaggcctcagggtg 687 |||| |||||||||||||||||||| |||| |||||| Sbjct: 670 ggaaatcaccaaagtcaacccaaaatgccttagggtg 634
>ref|NM_111260.3| Arabidopsis thaliana unknown protein AT3G03890 transcript variant AT3G03890.1 mRNA, complete cds Length = 1654 Score = 60.0 bits (30), Expect = 1e-05 Identities = 45/50 (90%) Strand = Plus / Minus Query: 290 gcagcctgtagcatttccacaataagtgtcttaacatcctttctgtcttg 339 ||||| || |||||||||||||| | |||||| ||||||||||||||||| Sbjct: 1441 gcagcttgaagcatttccacaatcaatgtctttacatcctttctgtcttg 1392 Score = 44.1 bits (22), Expect = 0.69 Identities = 34/38 (89%) Strand = Plus / Minus Query: 572 ctaaattctccagagccaaggatagctgttgcaacccc 609 |||||||||||||| ||||| | ||| ||||||||||| Sbjct: 1159 ctaaattctccagatccaagaaaagcagttgcaacccc 1122
>emb|BX822131.1|CNS0A73M Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB15ZD11 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1589 Score = 60.0 bits (30), Expect = 1e-05 Identities = 45/50 (90%) Strand = Plus / Minus Query: 290 gcagcctgtagcatttccacaataagtgtcttaacatcctttctgtcttg 339 ||||| || |||||||||||||| | |||||| ||||||||||||||||| Sbjct: 1440 gcagcttgaagcatttccacaatcaatgtctttacatcctttctgtcttg 1391 Score = 44.1 bits (22), Expect = 0.69 Identities = 34/38 (89%) Strand = Plus / Minus Query: 572 ctaaattctccagagccaaggatagctgttgcaacccc 609 |||||||||||||| ||||| | ||| ||||||||||| Sbjct: 1158 ctaaattctccagatccaagaaaagcagttgcaacccc 1121
>emb|BX842171.1|CNS09YEM Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL15ZG09 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1096 Score = 60.0 bits (30), Expect = 1e-05 Identities = 45/50 (90%) Strand = Plus / Minus Query: 290 gcagcctgtagcatttccacaataagtgtcttaacatcctttctgtcttg 339 ||||| || |||||||||||||| | |||||| ||||||||||||||||| Sbjct: 960 gcagcttgaagcatttccacaatcaatgtctttacatcctttctgtcttg 911 Score = 44.1 bits (22), Expect = 0.69 Identities = 34/38 (89%) Strand = Plus / Minus Query: 572 ctaaattctccagagccaaggatagctgttgcaacccc 609 |||||||||||||| ||||| | ||| ||||||||||| Sbjct: 678 ctaaattctccagatccaagaaaagcagttgcaacccc 641
>gb|AY085802.1| Arabidopsis thaliana clone 18355 mRNA, complete sequence Length = 1194 Score = 60.0 bits (30), Expect = 1e-05 Identities = 45/50 (90%) Strand = Plus / Minus Query: 290 gcagcctgtagcatttccacaataagtgtcttaacatcctttctgtcttg 339 ||||| || |||||||||||||| | |||||| ||||||||||||||||| Sbjct: 984 gcagcttgaagcatttccacaatcaatgtctttacatcctttctgtcttg 935 Score = 44.1 bits (22), Expect = 0.69 Identities = 34/38 (89%) Strand = Plus / Minus Query: 572 ctaaattctccagagccaaggatagctgttgcaacccc 609 |||||||||||||| ||||| | ||| ||||||||||| Sbjct: 702 ctaaattctccagatccaagaaaagcagttgcaacccc 665
>gb|AC120527.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0011J22 map R10571S, complete sequence Length = 154441 Score = 46.1 bits (23), Expect = 0.17 Identities = 23/23 (100%) Strand = Plus / Plus Query: 227 cgccgccaccgccaccgccttcc 249 ||||||||||||||||||||||| Sbjct: 80082 cgccgccaccgccaccgccttcc 80104
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 46.1 bits (23), Expect = 0.17 Identities = 23/23 (100%) Strand = Plus / Minus Query: 227 cgccgccaccgccaccgccttcc 249 ||||||||||||||||||||||| Sbjct: 3234903 cgccgccaccgccaccgccttcc 3234881 Score = 44.1 bits (22), Expect = 0.69 Identities = 22/22 (100%) Strand = Plus / Minus Query: 225 gacgccgccaccgccaccgcct 246 |||||||||||||||||||||| Sbjct: 24297856 gacgccgccaccgccaccgcct 24297835
>dbj|AK101314.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033034B16, full insert sequence Length = 3119 Score = 46.1 bits (23), Expect = 0.17 Identities = 23/23 (100%) Strand = Plus / Plus Query: 227 cgccgccaccgccaccgccttcc 249 ||||||||||||||||||||||| Sbjct: 7 cgccgccaccgccaccgccttcc 29
>dbj|AK071335.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023090O08, full insert sequence Length = 3021 Score = 46.1 bits (23), Expect = 0.17 Identities = 23/23 (100%) Strand = Plus / Plus Query: 227 cgccgccaccgccaccgccttcc 249 ||||||||||||||||||||||| Sbjct: 7 cgccgccaccgccaccgccttcc 29
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 46.1 bits (23), Expect = 0.17 Identities = 23/23 (100%) Strand = Plus / Minus Query: 227 cgccgccaccgccaccgccttcc 249 ||||||||||||||||||||||| Sbjct: 3243608 cgccgccaccgccaccgccttcc 3243586 Score = 44.1 bits (22), Expect = 0.69 Identities = 22/22 (100%) Strand = Plus / Minus Query: 225 gacgccgccaccgccaccgcct 246 |||||||||||||||||||||| Sbjct: 24609525 gacgccgccaccgccaccgcct 24609504
>ref|NM_180178.1| Arabidopsis thaliana unknown protein AT3G03890 transcript variant AT3G03890.2 mRNA, complete cds Length = 1223 Score = 44.1 bits (22), Expect = 0.69 Identities = 34/38 (89%) Strand = Plus / Minus Query: 572 ctaaattctccagagccaaggatagctgttgcaacccc 609 |||||||||||||| ||||| | ||| ||||||||||| Sbjct: 708 ctaaattctccagatccaagaaaagcagttgcaacccc 671
>ref|XM_463533.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2250 Score = 44.1 bits (22), Expect = 0.69 Identities = 22/22 (100%) Strand = Plus / Minus Query: 224 ggacgccgccaccgccaccgcc 245 |||||||||||||||||||||| Sbjct: 267 ggacgccgccaccgccaccgcc 246
>ref|NM_190464.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2010 Score = 44.1 bits (22), Expect = 0.69 Identities = 22/22 (100%) Strand = Plus / Minus Query: 228 gccgccaccgccaccgccttcc 249 |||||||||||||||||||||| Sbjct: 137 gccgccaccgccaccgccttcc 116
>ref|XM_478059.1| Oryza sativa (japonica cultivar-group), mRNA Length = 489 Score = 44.1 bits (22), Expect = 0.69 Identities = 22/22 (100%) Strand = Plus / Plus Query: 227 cgccgccaccgccaccgccttc 248 |||||||||||||||||||||| Sbjct: 5 cgccgccaccgccaccgccttc 26
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 44.1 bits (22), Expect = 0.69 Identities = 22/22 (100%) Strand = Plus / Minus Query: 225 gacgccgccaccgccaccgcct 246 |||||||||||||||||||||| Sbjct: 13292729 gacgccgccaccgccaccgcct 13292708
>gb|AC125782.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0095P22, complete sequence Length = 162766 Score = 44.1 bits (22), Expect = 0.69 Identities = 22/22 (100%) Strand = Plus / Minus Query: 225 gacgccgccaccgccaccgcct 246 |||||||||||||||||||||| Sbjct: 98965 gacgccgccaccgccaccgcct 98944
>gb|AC145349.1| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0096I10, complete sequence Length = 171946 Score = 44.1 bits (22), Expect = 0.69 Identities = 22/22 (100%) Strand = Plus / Plus Query: 225 gacgccgccaccgccaccgcct 246 |||||||||||||||||||||| Sbjct: 111133 gacgccgccaccgccaccgcct 111154
>gb|AY052741.1| Arabidopsis thaliana AT3g03890/F20H23_6 mRNA, complete cds Length = 918 Score = 44.1 bits (22), Expect = 0.69 Identities = 34/38 (89%) Strand = Plus / Minus Query: 572 ctaaattctccagagccaaggatagctgttgcaacccc 609 |||||||||||||| ||||| | ||| ||||||||||| Sbjct: 671 ctaaattctccagatccaagaaaagcagttgcaacccc 634
>gb|AF378894.1|AF378894 Arabidopsis thaliana AT3g03890/F20H23_6 mRNA, complete cds Length = 1220 Score = 44.1 bits (22), Expect = 0.69 Identities = 34/38 (89%) Strand = Plus / Minus Query: 572 ctaaattctccagagccaaggatagctgttgcaacccc 609 |||||||||||||| ||||| | ||| ||||||||||| Sbjct: 707 ctaaattctccagatccaagaaaagcagttgcaacccc 670
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 44.1 bits (22), Expect = 0.69 Identities = 22/22 (100%) Strand = Plus / Minus Query: 225 gacgccgccaccgccaccgcct 246 |||||||||||||||||||||| Sbjct: 13289504 gacgccgccaccgccaccgcct 13289483
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 44.1 bits (22), Expect = 0.69 Identities = 22/22 (100%) Strand = Plus / Minus Query: 224 ggacgccgccaccgccaccgcc 245 |||||||||||||||||||||| Sbjct: 38319810 ggacgccgccaccgccaccgcc 38319789 Score = 44.1 bits (22), Expect = 0.69 Identities = 22/22 (100%) Strand = Plus / Plus Query: 228 gccgccaccgccaccgccttcc 249 |||||||||||||||||||||| Sbjct: 35686909 gccgccaccgccaccgccttcc 35686930 Score = 42.1 bits (21), Expect = 2.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 227 cgccgccaccgccaccgccttccag 251 ||||||||||||||||||| ||||| Sbjct: 332551 cgccgccaccgccaccgccctccag 332527
>dbj|AP003561.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1065E10 Length = 183580 Score = 44.1 bits (22), Expect = 0.69 Identities = 22/22 (100%) Strand = Plus / Minus Query: 224 ggacgccgccaccgccaccgcc 245 |||||||||||||||||||||| Sbjct: 80635 ggacgccgccaccgccaccgcc 80614
>dbj|AP004366.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0460C04 Length = 189043 Score = 44.1 bits (22), Expect = 0.69 Identities = 22/22 (100%) Strand = Plus / Plus Query: 228 gccgccaccgccaccgccttcc 249 |||||||||||||||||||||| Sbjct: 90246 gccgccaccgccaccgccttcc 90267
>dbj|AP004347.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0675B10 Length = 136229 Score = 44.1 bits (22), Expect = 0.69 Identities = 22/22 (100%) Strand = Plus / Minus Query: 227 cgccgccaccgccaccgccttc 248 |||||||||||||||||||||| Sbjct: 132437 cgccgccaccgccaccgccttc 132416
>dbj|AP005181.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0016H06 Length = 148158 Score = 44.1 bits (22), Expect = 0.69 Identities = 22/22 (100%) Strand = Plus / Minus Query: 227 cgccgccaccgccaccgccttc 248 |||||||||||||||||||||| Sbjct: 36094 cgccgccaccgccaccgccttc 36073
>emb|CT573055.2| Medicago truncatula chromosome 5 clone mth2-75o19, COMPLETE SEQUENCE Length = 121343 Score = 44.1 bits (22), Expect = 0.69 Identities = 28/30 (93%) Strand = Plus / Plus Query: 534 atatgggatccacttttgcttccttgaact 563 |||||||| |||||||||||||||| |||| Sbjct: 72342 atatgggagccacttttgcttcctttaact 72371
>gb|AC136284.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OJ1739D07, from chromosome 3, complete sequence Length = 149539 Score = 44.1 bits (22), Expect = 0.69 Identities = 22/22 (100%) Strand = Plus / Plus Query: 225 gacgccgccaccgccaccgcct 246 |||||||||||||||||||||| Sbjct: 27112 gacgccgccaccgccaccgcct 27133
>ref|XM_549848.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1023 Score = 42.1 bits (21), Expect = 2.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 227 cgccgccaccgccaccgccttccag 251 ||||||||||||||||||| ||||| Sbjct: 139 cgccgccaccgccaccgccctccag 163
>ref|XM_466339.1| Oryza sativa (japonica cultivar-group), mRNA Length = 603 Score = 42.1 bits (21), Expect = 2.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 225 gacgccgccaccgccaccgcc 245 ||||||||||||||||||||| Sbjct: 117 gacgccgccaccgccaccgcc 137
>ref|XM_463903.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1654 Score = 42.1 bits (21), Expect = 2.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 225 gacgccgccaccgccaccgcc 245 ||||||||||||||||||||| Sbjct: 56 gacgccgccaccgccaccgcc 36
>ref|XM_506690.1| PREDICTED Oryza sativa (japonica cultivar-group), OSJNBb0088N06.10 mRNA Length = 2353 Score = 42.1 bits (21), Expect = 2.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 225 gacgccgccaccgccaccgcc 245 ||||||||||||||||||||| Sbjct: 74 gacgccgccaccgccaccgcc 54
>ref|NM_033041.2| Mus musculus hairy and enhancer of split 7 (Drosophila) (Hes7), mRNA Length = 965 Score = 42.1 bits (21), Expect = 2.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 228 gccgccaccgccaccgccttccaga 252 |||||||||||||||||||| |||| Sbjct: 613 gccgccaccgccaccgccttacaga 637
>ref|XM_953705.1| Neurospora crassa OR74A hypothetical protein (NCU05990.1) partial mRNA Length = 2112 Score = 42.1 bits (21), Expect = 2.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 225 gacgccgccaccgccaccgcc 245 ||||||||||||||||||||| Sbjct: 705 gacgccgccaccgccaccgcc 685
>ref|XM_325844.1| Neurospora crassa OR74A hypothetical protein (NCU05990.1) partial mRNA Length = 2112 Score = 42.1 bits (21), Expect = 2.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 225 gacgccgccaccgccaccgcc 245 ||||||||||||||||||||| Sbjct: 705 gacgccgccaccgccaccgcc 685
>gb|AC110534.11| Mus musculus chromosome 17, clone RP23-174D11, complete sequence Length = 174600 Score = 42.1 bits (21), Expect = 2.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 70 ctttgcatttctttaagtttg 90 ||||||||||||||||||||| Sbjct: 123377 ctttgcatttctttaagtttg 123357
>gb|AC016877.11| Homo sapiens chromosome 8, clone RP11-44N12, complete sequence Length = 188593 Score = 42.1 bits (21), Expect = 2.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 636 tgatgtgcagaaaacggaagt 656 ||||||||||||||||||||| Sbjct: 118207 tgatgtgcagaaaacggaagt 118227
>gb|AY371488.1| Zea mays clone BAC 276N12-123C01, partial sequence Length = 213888 Score = 42.1 bits (21), Expect = 2.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 227 cgccgccaccgccaccgcctt 247 ||||||||||||||||||||| Sbjct: 184156 cgccgccaccgccaccgcctt 184176
>gb|AC142288.1| Pan troglodytes BAC clone RP43-178D12 from 7, complete sequence Length = 187294 Score = 42.1 bits (21), Expect = 2.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 636 tgatgtgcagaaaacggaagt 656 ||||||||||||||||||||| Sbjct: 64192 tgatgtgcagaaaacggaagt 64172
>ref|XM_963695.1| PREDICTED: Tribolium castaneum similar to CG8677-PA (LOC657224), mRNA Length = 6921 Score = 42.1 bits (21), Expect = 2.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 224 ggacgccgccaccgccaccgc 244 ||||||||||||||||||||| Sbjct: 6717 ggacgccgccaccgccaccgc 6737
>emb|BX897699.1| Bartonella henselae strain Houston-1, complete genome Length = 1931047 Score = 42.1 bits (21), Expect = 2.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 227 cgccgccaccgccaccgcctt 247 ||||||||||||||||||||| Sbjct: 387440 cgccgccaccgccaccgcctt 387460
>emb|AL645527.20| Mouse DNA sequence from clone RP23-26L6 on chromosome 11 Contains the Vamp2 gene for vesicle-associated membrane 2, the Per1 gene for period homolog 1 (Drosophila), the Hes7 gene for hairy and enhancer of split 7 (Drosophila), the Aloxe3 gene for arachidonate lipoxygenase 3, the Alox12b gene for arachidonate 12-lipoxygenase 12R type, the Alox15b gene for arachidonate 15-lipoxygenase second type, the Gucy2e gene for guanylate cyclase 2e, a novel gene, the gene for LYST-interacting protein LIP8 (Lip8-pending), the gene for the likely ortholog of H. sapiens trafficking protein particle complex 1 (TRAPPC1)), the Kcnab3 gene for potassium voltage-gated channel shaker-related subfamily beta member 3, a novel gene, the 3' end of the Chd3 gene for chromodomain helicase DNA binding protein 3 and six CpG islands, complete sequence Length = 261224 Score = 42.1 bits (21), Expect = 2.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 228 gccgccaccgccaccgccttccaga 252 |||||||||||||||||||| |||| Sbjct: 39470 gccgccaccgccaccgccttacaga 39494
>emb|BX324004.6| Zebrafish DNA sequence from clone CH211-284O17 in linkage group 12, complete sequence Length = 136645 Score = 42.1 bits (21), Expect = 2.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 246 ttccagaacaaagaggtcatt 266 ||||||||||||||||||||| Sbjct: 95446 ttccagaacaaagaggtcatt 95466
>gb|AC104986.5| Homo sapiens chromosome 8, clone RP11-410L14, complete sequence Length = 153411 Score = 42.1 bits (21), Expect = 2.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 636 tgatgtgcagaaaacggaagt 656 ||||||||||||||||||||| Sbjct: 111005 tgatgtgcagaaaacggaagt 110985
>dbj|AB254812.1| Cryptomeria japonica mRNA for putative ORFX, complete cds Length = 885 Score = 42.1 bits (21), Expect = 2.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 225 gacgccgccaccgccaccgcc 245 ||||||||||||||||||||| Sbjct: 143 gacgccgccaccgccaccgcc 163
>dbj|AK050791.1| Mus musculus 9 days embryo whole body cDNA, RIKEN full-length enriched library, clone:D030020D08 product:BHLH FACTOR HES7, full insert sequence Length = 965 Score = 42.1 bits (21), Expect = 2.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 228 gccgccaccgccaccgccttccaga 252 |||||||||||||||||||| |||| Sbjct: 613 gccgccaccgccaccgccttacaga 637
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 42.1 bits (21), Expect = 2.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 221 catggacgccgccaccgccaccgcc 245 |||||||||||||||||||| |||| Sbjct: 30350699 catggacgccgccaccgccagcgcc 30350723 Score = 42.1 bits (21), Expect = 2.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 225 gacgccgccaccgccaccgcc 245 ||||||||||||||||||||| Sbjct: 27521588 gacgccgccaccgccaccgcc 27521568
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 42.1 bits (21), Expect = 2.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 225 gacgccgccaccgccaccgcc 245 ||||||||||||||||||||| Sbjct: 21770053 gacgccgccaccgccaccgcc 21770073 Score = 42.1 bits (21), Expect = 2.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 225 gacgccgccaccgccaccgcc 245 ||||||||||||||||||||| Sbjct: 10947369 gacgccgccaccgccaccgcc 10947389 Score = 42.1 bits (21), Expect = 2.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 225 gacgccgccaccgccaccgcc 245 ||||||||||||||||||||| Sbjct: 1050048 gacgccgccaccgccaccgcc 1050068
>gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome Length = 3304561 Score = 42.1 bits (21), Expect = 2.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 226 acgccgccaccgccaccgcct 246 ||||||||||||||||||||| Sbjct: 1003703 acgccgccaccgccaccgcct 1003683
>dbj|AP004078.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1020_C02 Length = 124578 Score = 42.1 bits (21), Expect = 2.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 225 gacgccgccaccgccaccgcc 245 ||||||||||||||||||||| Sbjct: 2572 gacgccgccaccgccaccgcc 2592
>dbj|AP005851.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBb0088N06 Length = 123454 Score = 42.1 bits (21), Expect = 2.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 225 gacgccgccaccgccaccgcc 245 ||||||||||||||||||||| Sbjct: 38756 gacgccgccaccgccaccgcc 38776
>dbj|AP003685.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0548E04 Length = 138037 Score = 42.1 bits (21), Expect = 2.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 221 catggacgccgccaccgccaccgcc 245 |||||||||||||||||||| |||| Sbjct: 97294 catggacgccgccaccgccagcgcc 97318
>dbj|AP005610.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0032M14 Length = 146636 Score = 42.1 bits (21), Expect = 2.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 225 gacgccgccaccgccaccgcc 245 ||||||||||||||||||||| Sbjct: 91146 gacgccgccaccgccaccgcc 91126
>dbj|AP005192.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0485A07 Length = 166397 Score = 42.1 bits (21), Expect = 2.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 225 gacgccgccaccgccaccgcc 245 ||||||||||||||||||||| Sbjct: 140657 gacgccgccaccgccaccgcc 140637
>dbj|AP002863.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0005A05 Length = 190834 Score = 42.1 bits (21), Expect = 2.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 227 cgccgccaccgccaccgccttccag 251 ||||||||||||||||||| ||||| Sbjct: 84389 cgccgccaccgccaccgccctccag 84365
>emb|AL954339.10| Zebrafish DNA sequence from clone CH211-221J21 in linkage group 12, complete sequence Length = 203958 Score = 42.1 bits (21), Expect = 2.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 246 ttccagaacaaagaggtcatt 266 ||||||||||||||||||||| Sbjct: 109825 ttccagaacaaagaggtcatt 109805
>dbj|AP004168.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1756_H07 Length = 217205 Score = 42.1 bits (21), Expect = 2.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 225 gacgccgccaccgccaccgcc 245 ||||||||||||||||||||| Sbjct: 153568 gacgccgccaccgccaccgcc 153588
>dbj|AP006069.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0025F02 Length = 156545 Score = 42.1 bits (21), Expect = 2.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 225 gacgccgccaccgccaccgcc 245 ||||||||||||||||||||| Sbjct: 151450 gacgccgccaccgccaccgcc 151470
>dbj|AP005835.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0008E01 Length = 156856 Score = 42.1 bits (21), Expect = 2.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 225 gacgccgccaccgccaccgcc 245 ||||||||||||||||||||| Sbjct: 62452 gacgccgccaccgccaccgcc 62472
>ref|XM_560671.1| Anopheles gambiae str. PEST ENSANGP00000027627 (ENSANGG00000023126), partial mRNA Length = 2037 Score = 42.1 bits (21), Expect = 2.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 227 cgccgccaccgccaccgcctt 247 ||||||||||||||||||||| Sbjct: 1592 cgccgccaccgccaccgcctt 1612
>dbj|AK101590.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033051C08, full insert sequence Length = 1654 Score = 42.1 bits (21), Expect = 2.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 225 gacgccgccaccgccaccgcc 245 ||||||||||||||||||||| Sbjct: 56 gacgccgccaccgccaccgcc 36
>dbj|AK068794.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013162N11, full insert sequence Length = 1225 Score = 42.1 bits (21), Expect = 2.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 225 gacgccgccaccgccaccgcc 245 ||||||||||||||||||||| Sbjct: 680 gacgccgccaccgccaccgcc 700
>dbj|AK067383.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013100B15, full insert sequence Length = 2353 Score = 42.1 bits (21), Expect = 2.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 225 gacgccgccaccgccaccgcc 245 ||||||||||||||||||||| Sbjct: 74 gacgccgccaccgccaccgcc 54
>dbj|AK063231.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-112-F05, full insert sequence Length = 786 Score = 42.1 bits (21), Expect = 2.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 225 gacgccgccaccgccaccgcc 245 ||||||||||||||||||||| Sbjct: 341 gacgccgccaccgccaccgcc 321
>dbj|AK061314.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-302-C12, full insert sequence Length = 1022 Score = 42.1 bits (21), Expect = 2.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 227 cgccgccaccgccaccgccttccag 251 ||||||||||||||||||| ||||| Sbjct: 139 cgccgccaccgccaccgccctccag 163
>gb|AF119821.1|AF119821 Mus musculus attractin (Mgca) mRNA, complete cds Length = 4313 Score = 42.1 bits (21), Expect = 2.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 225 gacgccgccaccgccaccgcc 245 ||||||||||||||||||||| Sbjct: 52 gacgccgccaccgccaccgcc 32
>gb|AE016830.1| Enterococcus faecalis V583, complete genome Length = 3218031 Score = 42.1 bits (21), Expect = 2.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 227 cgccgccaccgccaccgcctt 247 ||||||||||||||||||||| Sbjct: 242477 cgccgccaccgccaccgcctt 242457
>dbj|AB050104.1| Mus musculus gene for bHLH factor Hes7, complete cds Length = 3591 Score = 42.1 bits (21), Expect = 2.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 228 gccgccaccgccaccgccttccaga 252 |||||||||||||||||||| |||| Sbjct: 3066 gccgccaccgccaccgccttacaga 3090
>dbj|AB049065.1| Mus musculus mRNA for bHLH factor Hes7, complete cds Length = 678 Score = 42.1 bits (21), Expect = 2.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 228 gccgccaccgccaccgccttccaga 252 |||||||||||||||||||| |||| Sbjct: 591 gccgccaccgccaccgccttacaga 615
>dbj|AP003691.2| Homo sapiens genomic DNA, chromosome 8q23, clone:KB1594B3, complete sequence Length = 157952 Score = 42.1 bits (21), Expect = 2.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 636 tgatgtgcagaaaacggaagt 656 ||||||||||||||||||||| Sbjct: 120040 tgatgtgcagaaaacggaagt 120060 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7,448,976 Number of Sequences: 3902068 Number of extensions: 7448976 Number of successful extensions: 154401 Number of sequences better than 10.0: 81 Number of HSP's better than 10.0 without gapping: 88 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 152851 Number of HSP's gapped (non-prelim): 1541 length of query: 780 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 757 effective length of database: 17,143,297,704 effective search space: 12977476361928 effective search space used: 12977476361928 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 21 (42.1 bits)