>TARA_HUMAN (Q9H2D6) TRIO and F-actin-binding protein (Protein Tara)|
            (Trio-associated repeat on actin)
          Length = 2365

 Score = 32.0 bits (71), Expect = 1.7
 Identities = 26/93 (27%), Positives = 34/93 (36%), Gaps = 13/93 (13%)
 Frame = +3

Query: 243  HRGSPKFTD*PRHLEVDS----GDRSQAAPPQESSSHYPRSRQVPPCPSGRGT------- 389
            HR +P+ +  PRH + D      D S A    +S  H P     P C   R         
Sbjct: 1067 HRDAPRASSPPRHTQFDPFPFLPDTSDAEHQCQSPQHEPLQLPAPVCIGYRDAPRASSPP 1126

Query: 390  --ATTGMKTLQMLPGWQTEHGILSLFPTNHCPH 482
              A       Q LP   TE  + S+   + CPH
Sbjct: 1127 RQAPEPSLLFQDLPRASTESLVPSMDSLHECPH 1159

>GAL7_STRLI (P13212) Galactose-1-phosphate uridylyltransferase (EC 2.7.7.12)|
           (Gal-1-P uridylyltransferase)
           (UDP-glucose--hexose-1-phosphate uridylyltransferase)
          Length = 354

 Score = 31.6 bits (70), Expect = 2.3
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +3

Query: 297 GDRSQAAPPQESSSHYPRSRQVPPCPSGRGTA 392
           GD + +    +  +++P + Q P CPSGRGTA
Sbjct: 49  GDSAPSRLAPQGRTYHPPADQCPLCPSGRGTA 80

>APBA2_MOUSE (P98084) Amyloid beta A4 precursor protein-binding family A member|
           2 (Neuron-specific X11L protein) (Neuronal
           Munc18-1-interacting protein 2) (Mint-2) (Adapter
           protein X11beta)
          Length = 750

 Score = 30.8 bits (68), Expect = 3.9
 Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 7/58 (12%)
 Frame = +3

Query: 273 PRHL-EVDSGDRSQAAPPQES------SSHYPRSRQVPPCPSGRGTATTGMKTLQMLP 425
           P H+ E+D GD ++A PP ++          P+S  +PP     G    G+KT    P
Sbjct: 251 PEHMPELDPGDSTEACPPSDTGHGPGRQEARPKSLNLPPEVKHPGDLQRGLKTKTRTP 308

>RNA14_YEAST (P25298) mRNA 3'-end processing protein RNA14|
          Length = 677

 Score = 30.8 bits (68), Expect = 3.9
 Identities = 14/34 (41%), Positives = 22/34 (64%)
 Frame = +2

Query: 446 YTKLISHKPLPTLTAKPSALYPSRSDSETITNVF 547
           YT L+++   P+LT K S  Y   +DSE+++N F
Sbjct: 339 YTALLANPDSPSLTFKLSECYELDNDSESVSNCF 372

>PER3_HUMAN (P56645) Period circadian protein 3 (hPER3)|
          Length = 1201

 Score = 30.4 bits (67), Expect = 5.1
 Identities = 25/86 (29%), Positives = 32/86 (37%)
 Frame = +3

Query: 294  SGDRSQAAPPQESSSHYPRSRQVPPCPSGRGTATTGMKTLQMLPGWQTEHGILSLFPTNH 473
            +G  S  +PP+E+ SH        P  S   T +  MK           H   S   T  
Sbjct: 969  TGALSTGSPPRENPSH--------PTASALSTGSPPMKN--------PSHPTASALSTGS 1012

Query: 474  CPH*LPSHPHYTLQGLTQRPSRMSSH 551
             P   PSHP  +   +   PSR  SH
Sbjct: 1013 PPMKNPSHPTASTLSMGLPPSRTPSH 1038

>HCN4_RABIT (Q9TV66) Potassium/sodium hyperpolarization-activated cyclic|
           nucleotide-gated channel 4 (Hyperpolarization-activated
           cation channel 4) (HAC-4)
          Length = 1175

 Score = 30.0 bits (66), Expect = 6.6
 Identities = 24/69 (34%), Positives = 29/69 (42%)
 Frame = +3

Query: 273 PRHLEVDSGDRSQAAPPQESSSHYPRSRQVPPCPSGRGTATTGMKTLQMLPGWQTEHGIL 452
           PRHL      R Q+  P   S   P S      PS   T ++    +Q LPG  T  G+ 
Sbjct: 821 PRHLR-----RLQSLAPSAPSPASPASS-----PSQPDTPSSASLHVQPLPGCSTPAGLG 870

Query: 453 SLFPTNHCP 479
           SL PT   P
Sbjct: 871 SLLPTAGSP 879

>Y1145_VIBPA (Q87QK4) UPF0225 protein VP1145|
          Length = 167

 Score = 30.0 bits (66), Expect = 6.6
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = -1

Query: 387 CRAQKDKEALAESVGSESCSLEAEQPANGHH 295
           C A++ +E +A+S+ S+ C LE  +   G H
Sbjct: 57  CNAEEQREGIAQSIDSDWCKLEVVKAEAGSH 87

>GYS2_RAT (P17625) Glycogen [starch] synthase, liver (EC 2.4.1.11)|
          Length = 703

 Score = 29.6 bits (65), Expect = 8.7
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +3

Query: 315 APPQESSSHYPRSRQVPPCPSGRGTAT 395
           +PP      YPR   VPP PSG  T++
Sbjct: 626 SPPTTDGFKYPRPSSVPPSPSGSQTSS 652


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 97,730,173
Number of Sequences: 219361
Number of extensions: 2075356
Number of successful extensions: 5662
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 5429
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5657
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6541540170
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)