Clone Information

BLAST Search Result

Clone Name	rbaal33a02
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	YG41_SCHPO (O60176) Hypothetical RNA-binding protein C23E6.01c i...	54	4e-07
2	NAM8_YEAST (Q00539) Protein NAM8	49	1e-05
3	CSX1_SCHPO (O13759) RNA-binding post-transcriptional regulator csx1	48	2e-05
4	NGR1_YEAST (P32831) Negative growth regulatory protein NGR1 (RNA...	45	2e-04
5	NRD1_SCHPO (Q09702) Negative regulator of differentiation 1 (Mul...	35	0.15
6	CUGB1_MOUSE (P28659) CUG triplet repeat RNA-binding protein 1 (C...	34	0.25
7	CUGB1_HUMAN (Q92879) CUG triplet repeat RNA-binding protein 1 (C...	34	0.25
8	NELFE_MOUSE (P19426) Negative elongation factor E (NELF-E) (RD p...	33	0.56
9	HNRPQ_MOUSE (Q7TMK9) Heterogeneous nuclear ribonucleoprotein Q (...	33	0.56
10	HNRPQ_HUMAN (O60506) Heterogeneous nuclear ribonucleoprotein Q (...	33	0.56
11	HNRPQ_RAT (Q7TP47) Heterogeneous nuclear ribonucleoprotein Q (hn...	33	0.56
12	NELFE_HUMAN (P18615) Negative elongation factor E (NELF-E) (RD p...	33	0.56
13	ELAV1_MOUSE (P70372) ELAV-like protein 1 (Hu-antigen R) (HuR) (E...	33	0.56
14	PABP_DROME (P21187) Polyadenylate-binding protein (Poly(A)-bindi...	32	0.96
15	OR6C2_HUMAN (Q9NZP2) Olfactory receptor 6C2 (HSA3)	32	0.96
16	ELAV1_HUMAN (Q15717) ELAV-like protein 1 (Hu-antigen R) (HuR)	32	1.3
17	RSP1_CAEEL (Q23121) Probable splicing factor, arginine/serine-ri...	31	2.1
18	RT19_ARATH (P39697) 40S ribosomal protein S19, mitochondrial pre...	31	2.1
19	YHH5_YEAST (P38760) Hypothetical 75.9 kDa protein in SPO13-ARG4 ...	31	2.1
20	TIA1_MOUSE (P52912) Nucleolysin TIA-1 (RNA-binding protein TIA-1)	31	2.1
21	TIA1_HUMAN (P31483) Nucleolysin TIA-1 isoform p40 (RNA-binding p...	31	2.1
22	TIAR_MOUSE (P70318) Nucleolysin TIAR (TIA-1-related protein)	31	2.8
23	SXL_MEGSC (O01671) Sex-lethal homolog	31	2.8
24	WRT1_CAEEL (Q94128) Warthog protein 1 precursor [Contains: Warth...	31	2.8
25	TIAR_HUMAN (Q01085) Nucleolysin TIAR (TIA-1-related protein)	31	2.8
26	RBPMS_CHICK (Q9W6I1) RNA-binding protein with multiple splicing ...	31	2.8
27	AMC1_ORYSA (P27940) Alpha-amylase isozyme C (EC 3.2.1.1) (1,4-al...	30	3.6
28	NCBP2_MOUSE (Q9CQ49) Nuclear cap-binding protein subunit 2 (20 k...	30	3.6
29	NCBP2_HUMAN (P52298) Nuclear cap-binding protein subunit 2 (20 k...	30	3.6
30	NCBP2_BOVIN (Q3ZBJ1) Nuclear cap-binding protein subunit 2	30	3.6
31	PUB1_YEAST (P32588) Nuclear and cytoplasmic polyadenylated RNA-b...	30	3.6
32	SLT11_USTMA (Q4PGU6) Pre-mRNA-splicing factor SLT11	30	4.8
33	ELAV_DROME (P16914) Protein elav (Embryonic lethal abnormal visu...	30	4.8
34	ELAV_DROVI (P23241) Protein elav (Embryonic lethal abnormal visu...	30	4.8
35	USH2A_HUMAN (O75445) Usherin precursor (Usher syndrome type-2A p...	30	6.2
36	RBPMS_XENLA (Q9YGP5) RNA-binding protein with multiple splicing ...	30	6.2
37	ELAV2_RAT (Q8CH84) ELAV-like protein 2 (Hu-antigen B) (HuB)	29	8.1
38	ELAV2_PONPY (Q5R9Z6) ELAV-like protein 2	29	8.1
39	ELAV2_MOUSE (Q60899) ELAV-like protein 2 (Hu-antigen B) (HuB) (E...	29	8.1
40	ELAV2_HUMAN (Q12926) ELAV-like protein 2 (Hu-antigen B) (HuB) (E...	29	8.1
41	YBKC_SCHPO (O94621) Hypothetical RNA-binding protein C1289.12 in...	29	8.1
42	ELAV4_RAT (O09032) ELAV-like protein 4 (Paraneoplastic encephalo...	29	8.1
43	ELAV4_HUMAN (P26378) ELAV-like protein 4 (Paraneoplastic encepha...	29	8.1
44	ELAV4_MOUSE (Q61701) ELAV-like protein 4 (Paraneoplastic encepha...	29	8.1
45	RX21_DROME (Q24491) RNA-binding protein Rsf1 (RNA-binding protei...	29	8.1

>YG41_SCHPO (O60176) Hypothetical RNA-binding protein C23E6.01c in chromosome|
           II
          Length = 473

 Score = 53.5 bits (127), Expect = 4e-07
 Identities = 24/40 (60%), Positives = 30/40 (75%)
 Frame = -2

Query: 566 KRCGFVQFTSRACAEQAISALNGSQIGSSNVRLSWGRSQN 447
           K CGFVQF +R  AE AI+ L G  +G+S +RLSWGR+QN
Sbjct: 338 KGCGFVQFVNRQSAEIAINQLQGYPLGNSRIRLSWGRNQN 377

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>NAM8_YEAST (Q00539) Protein NAM8|
          Length = 523

 Score = 48.9 bits (115), Expect = 1e-05
 Identities = 31/82 (37%), Positives = 36/82 (43%)
 Frame = -2

Query: 566 KRCGFVQFTSRACAEQAISALNGSQIGSSNVRLSWGRSQNKQPPQQDAXXXXXXXXXXXX 387
           K CGFVQ+  R  AE AI+ + G  I +S VRLSWGRS  +    Q A            
Sbjct: 348 KCCGFVQYVDRLSAEAAIAGMQGFPIANSRVRLSWGRSAKQTALLQQAMLSNSL------ 401

Query: 386 XGPDAYYGAPNAQDPSMQNYGY 321
                    P  Q P   NYGY
Sbjct: 402 ---QVQQQQPGLQQP---NYGY 417

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>CSX1_SCHPO (O13759) RNA-binding post-transcriptional regulator csx1|
          Length = 632

 Score = 47.8 bits (112), Expect = 2e-05
 Identities = 17/38 (44%), Positives = 31/38 (81%)
 Frame = -2

Query: 566 KRCGFVQFTSRACAEQAISALNGSQIGSSNVRLSWGRS 453
           K CGFVQ++ ++ AE+AI+ + G+ +G+S++RL+WG +
Sbjct: 332 KGCGFVQYSEKSAAEKAINTMQGALVGTSHIRLAWGHN 369

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>NGR1_YEAST (P32831) Negative growth regulatory protein NGR1 (RNA-binding|
           protein RBP1)
          Length = 672

 Score = 44.7 bits (104), Expect = 2e-04
 Identities = 20/37 (54%), Positives = 24/37 (64%)
 Frame = -2

Query: 566 KRCGFVQFTSRACAEQAISALNGSQIGSSNVRLSWGR 456
           K CGFV+F  R  AE +I  L G  +G S +RLSWGR
Sbjct: 395 KNCGFVKFEKRIDAEASIQGLQGFIVGGSPIRLSWGR 431

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>NRD1_SCHPO (Q09702) Negative regulator of differentiation 1 (Multicopy|
           suppressor of sporulation protein msa2)
          Length = 529

 Score = 35.0 bits (79), Expect = 0.15
 Identities = 18/48 (37%), Positives = 27/48 (56%)
 Frame = -2

Query: 566 KRCGFVQFTSRACAEQAISALNGSQIGSSNVRLSWGRSQNKQPPQQDA 423
           K C FV FTS A A  AI  +   + G  N R+S+G+ +   PP+ ++
Sbjct: 449 KNCAFVNFTSLASAINAIDRIKQKK-GYENYRISYGKDRCGNPPRTNS 495

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>CUGB1_MOUSE (P28659) CUG triplet repeat RNA-binding protein 1 (CUG-BP1)|
           (RNA-binding protein BRUNOL-2) (Deadenylation factor
           CUG-BP) (Deadenylation factor EDEN-BP) (Brain protein
           F41)
          Length = 486

 Score = 34.3 bits (77), Expect = 0.25
 Identities = 15/41 (36%), Positives = 24/41 (58%)
 Frame = -2

Query: 557 GFVQFTSRACAEQAISALNGSQIGSSNVRLSWGRSQNKQPP 435
           GFV + +   A+ AI ++NG QIG   +++   RS+N   P
Sbjct: 445 GFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKRSKNDSKP 485

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>CUGB1_HUMAN (Q92879) CUG triplet repeat RNA-binding protein 1 (CUG-BP1)|
           (RNA-binding protein BRUNOL-2) (Deadenylation factor
           CUG-BP) (50 kDa Nuclear polyadenylated RNA-binding
           protein) (EDEN-BP)
          Length = 486

 Score = 34.3 bits (77), Expect = 0.25
 Identities = 15/41 (36%), Positives = 24/41 (58%)
 Frame = -2

Query: 557 GFVQFTSRACAEQAISALNGSQIGSSNVRLSWGRSQNKQPP 435
           GFV + +   A+ AI ++NG QIG   +++   RS+N   P
Sbjct: 445 GFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKRSKNDSKP 485

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>NELFE_MOUSE (P19426) Negative elongation factor E (NELF-E) (RD protein)|
          Length = 375

 Score = 33.1 bits (74), Expect = 0.56
 Identities = 13/39 (33%), Positives = 24/39 (61%)
 Frame = -2

Query: 566 KRCGFVQFTSRACAEQAISALNGSQIGSSNVRLSWGRSQ 450
           + C FV +     A+QA++ LNG+Q+ S  ++++  R Q
Sbjct: 299 RNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQ 337

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>HNRPQ_MOUSE (Q7TMK9) Heterogeneous nuclear ribonucleoprotein Q (hnRNP Q)|
           (hnRNP-Q) (Synaptotagmin-binding, cytoplasmic
           RNA-interacting protein) (Glycine-and tyrosine-rich
           RNA-binding protein) (GRY-RBP) (NS1-associated protein
           1) (pp68)
          Length = 623

 Score = 33.1 bits (74), Expect = 0.56
 Identities = 21/88 (23%), Positives = 31/88 (35%)
 Frame = -2

Query: 566 KRCGFVQFTSRACAEQAISALNGSQIGSSNVRLSWGRSQNKQPPQQDAXXXXXXXXXXXX 387
           K   F+ F  R  A +A+  +NG  +   N+ + +     K P Q+              
Sbjct: 371 KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFA----KPPDQKRKERKAQRQAAKNQ 426

Query: 386 XGPDAYYGAPNAQDPSMQNYGYSGYGSY 303
              D YY  P    P  +  G  G G Y
Sbjct: 427 MYDDYYYYGPPHMPPPTRGRGRGGRGGY 454

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>HNRPQ_HUMAN (O60506) Heterogeneous nuclear ribonucleoprotein Q (hnRNP Q)|
           (hnRNP-Q) (Synaptotagmin-binding, cytoplasmic
           RNA-interacting protein) (Glycine-and tyrosine-rich
           RNA-binding protein) (GRY-RBP) (NS1-associated protein
           1)
          Length = 623

 Score = 33.1 bits (74), Expect = 0.56
 Identities = 21/88 (23%), Positives = 31/88 (35%)
 Frame = -2

Query: 566 KRCGFVQFTSRACAEQAISALNGSQIGSSNVRLSWGRSQNKQPPQQDAXXXXXXXXXXXX 387
           K   F+ F  R  A +A+  +NG  +   N+ + +     K P Q+              
Sbjct: 371 KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFA----KPPDQKRKERKAQRQAAKNQ 426

Query: 386 XGPDAYYGAPNAQDPSMQNYGYSGYGSY 303
              D YY  P    P  +  G  G G Y
Sbjct: 427 MYDDYYYYGPPHMPPPTRGRGRGGRGGY 454

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>HNRPQ_RAT (Q7TP47) Heterogeneous nuclear ribonucleoprotein Q (hnRNP Q)|
           (hnRNP-Q) (Synaptotagmin-binding, cytoplasmic
           RNA-interacting protein) (Liver regeneration-related
           protein LRRG077)
          Length = 533

 Score = 33.1 bits (74), Expect = 0.56
 Identities = 21/88 (23%), Positives = 31/88 (35%)
 Frame = -2

Query: 566 KRCGFVQFTSRACAEQAISALNGSQIGSSNVRLSWGRSQNKQPPQQDAXXXXXXXXXXXX 387
           K   F+ F  R  A +A+  +NG  +   N+ + +     K P Q+              
Sbjct: 281 KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFA----KPPDQKRKERKAQRQAAKNQ 336

Query: 386 XGPDAYYGAPNAQDPSMQNYGYSGYGSY 303
              D YY  P    P  +  G  G G Y
Sbjct: 337 MYDDYYYYGPPHMPPPTRGRGRGGRGGY 364

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>NELFE_HUMAN (P18615) Negative elongation factor E (NELF-E) (RD protein)|
          Length = 380

 Score = 33.1 bits (74), Expect = 0.56
 Identities = 13/39 (33%), Positives = 24/39 (61%)
 Frame = -2

Query: 566 KRCGFVQFTSRACAEQAISALNGSQIGSSNVRLSWGRSQ 450
           + C FV +     A+QA++ LNG+Q+ S  ++++  R Q
Sbjct: 295 RNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQ 333

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>ELAV1_MOUSE (P70372) ELAV-like protein 1 (Hu-antigen R) (HuR) (Elav-like|
           generic protein) (MelG)
          Length = 326

 Score = 33.1 bits (74), Expect = 0.56
 Identities = 14/38 (36%), Positives = 25/38 (65%)
 Frame = -2

Query: 557 GFVQFTSRACAEQAISALNGSQIGSSNVRLSWGRSQNK 444
           GFV + +   AE+AIS LNG ++ S  +++S+ R  ++
Sbjct: 64  GFVNYVTAKDAERAISTLNGLRLQSKTIKVSYARPSSE 101

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>PABP_DROME (P21187) Polyadenylate-binding protein (Poly(A)-binding protein)|
           (PABP)
          Length = 634

 Score = 32.3 bits (72), Expect = 0.96
 Identities = 19/47 (40%), Positives = 24/47 (51%)
 Frame = -2

Query: 566 KRCGFVQFTSRACAEQAISALNGSQIGSSNVRLSWGRSQNKQPPQQD 426
           K  GFV F +   AE A+ ALNG  +G     L   R+Q K   QQ+
Sbjct: 223 KGFGFVAFETTEAAEAAVQALNGKDMGEGK-SLYVARAQKKAERQQE 268

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>OR6C2_HUMAN (Q9NZP2) Olfactory receptor 6C2 (HSA3)|
          Length = 312

 Score = 32.3 bits (72), Expect = 0.96
 Identities = 13/41 (31%), Positives = 28/41 (68%), Gaps = 3/41 (7%)
 Frame = +3

Query: 345 ILRIGCT---IVSIRTLLISIVAVAITLVCILLGRLFVLAT 458
           +L+I C+   ++    +L+++ A+ ITLVC++L  L+++ T
Sbjct: 182 LLKISCSDTWVIEQMVILMAVFALIITLVCVILSYLYIVRT 222

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>ELAV1_HUMAN (Q15717) ELAV-like protein 1 (Hu-antigen R) (HuR)|
          Length = 326

 Score = 32.0 bits (71), Expect = 1.3
 Identities = 13/38 (34%), Positives = 25/38 (65%)
 Frame = -2

Query: 557 GFVQFTSRACAEQAISALNGSQIGSSNVRLSWGRSQNK 444
           GFV + +   AE+AI+ LNG ++ S  +++S+ R  ++
Sbjct: 64  GFVNYVTAKDAERAINTLNGLRLQSKTIKVSYARPSSE 101

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>RSP1_CAEEL (Q23121) Probable splicing factor, arginine/serine-rich 1|
           (RNA-binding protein srp-5) (CeSRp75)
          Length = 312

 Score = 31.2 bits (69), Expect = 2.1
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -2

Query: 557 GFVQFTSRACAEQAISALNGSQIGSSNVRLSWGR 456
           GFV+F  +  AE A+  LNG ++G   V L + +
Sbjct: 39  GFVEFDDKRDAEDAVHDLNGKELGGERVILDYSK 72

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>RT19_ARATH (P39697) 40S ribosomal protein S19, mitochondrial precursor|
          Length = 212

 Score = 31.2 bits (69), Expect = 2.1
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = -2

Query: 557 GFVQFTSRACAEQAISALNGSQIGSSNVRLSWGRSQNKQPPQQD 426
           GFV F S   A  AISA+NG ++   N+ ++  +     P   D
Sbjct: 75  GFVNFISEDSANSAISAMNGQELNGFNISVNVAKDWPSLPLSLD 118

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>YHH5_YEAST (P38760) Hypothetical 75.9 kDa protein in SPO13-ARG4 intergenic|
           region
          Length = 659

 Score = 31.2 bits (69), Expect = 2.1
 Identities = 15/38 (39%), Positives = 23/38 (60%)
 Frame = -2

Query: 560 CGFVQFTSRACAEQAISALNGSQIGSSNVRLSWGRSQN 447
           CG V+  SR+ AE+  + L+   IGSS V  SW ++ +
Sbjct: 445 CGHVECFSRSDAERLFNILDRRLIGSSLVEASWSKNND 482

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>TIA1_MOUSE (P52912) Nucleolysin TIA-1 (RNA-binding protein TIA-1)|
          Length = 386

 Score = 31.2 bits (69), Expect = 2.1
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = -2

Query: 566 KRCGFVQFTSRACAEQAISALNGSQIGSSNVRLSWGRSQNKQPP 435
           K  GFV F ++  AE AI  + G  +G   +R +W     ++PP
Sbjct: 147 KGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA---TRKPP 187



 Score = 29.3 bits (64), Expect = 8.1
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -2

Query: 566 KRCGFVQFTSRACAEQAISALNGSQIGSSNVRLSWGR 456
           K   FV+F+S   A  AI ++NG+ I    V+  WG+
Sbjct: 249 KGYSFVRFSSHESAAHAIVSVNGTTIEGHVVKCYWGK 285



 Score = 29.3 bits (64), Expect = 8.1
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = -2

Query: 554 FVQFTSRACAEQAISALNGSQIGSSNVRLSWGRSQNKQ 441
           FV+F     A  A++A+NG +I    V+++W  + + Q
Sbjct: 50  FVEFHEHRHAAAALAAMNGRKIMGKEVKVNWATTPSSQ 87

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>TIA1_HUMAN (P31483) Nucleolysin TIA-1 isoform p40 (RNA-binding protein TIA-1)|
           (p40-TIA-1) [Contains: Nucleolysin TIA-1 isoform p15
           (p15-TIA-1)]
          Length = 386

 Score = 31.2 bits (69), Expect = 2.1
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = -2

Query: 566 KRCGFVQFTSRACAEQAISALNGSQIGSSNVRLSWGRSQNKQPP 435
           K  GFV F ++  AE AI  + G  +G   +R +W     ++PP
Sbjct: 147 KGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA---TRKPP 187



 Score = 29.3 bits (64), Expect = 8.1
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = -2

Query: 554 FVQFTSRACAEQAISALNGSQIGSSNVRLSWGRSQNKQ 441
           FV+F     A  A++A+NG +I    V+++W  + + Q
Sbjct: 50  FVEFHEHRHAAAALAAMNGRKIMGKEVKVNWATTPSSQ 87

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>TIAR_MOUSE (P70318) Nucleolysin TIAR (TIA-1-related protein)|
          Length = 392

 Score = 30.8 bits (68), Expect = 2.8
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = -2

Query: 566 KRCGFVQFTSRACAEQAISALNGSQIGSSNVRLSWGRSQNKQPP 435
           K  GFV F ++  AE AI  + G  +G   +R +W     ++PP
Sbjct: 155 KGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWA---TRKPP 195

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>SXL_MEGSC (O01671) Sex-lethal homolog|
          Length = 321

 Score = 30.8 bits (68), Expect = 2.8
 Identities = 15/39 (38%), Positives = 24/39 (61%)
 Frame = -2

Query: 557 GFVQFTSRACAEQAISALNGSQIGSSNVRLSWGRSQNKQ 441
           GFV F S A A +AI+ LNG  + +  +++S+ R   +Q
Sbjct: 122 GFVDFGSEADALRAINNLNGITVRNKRIKVSFARPGGEQ 160

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>WRT1_CAEEL (Q94128) Warthog protein 1 precursor [Contains: Warthog protein 1|
           N-product; Warthog protein 1 C-product]
          Length = 485

 Score = 30.8 bits (68), Expect = 2.8
 Identities = 17/45 (37%), Positives = 21/45 (46%)
 Frame = +2

Query: 305 NCHNQSIHSFAC*DLAHWVHHSKHQDPVDIHSSCCHYPGLHPAGE 439
           NC  +   S +C +   WV   K  D  D+   CCHY GL  A E
Sbjct: 98  NCPRE-FSSSSCSNPMTWVGGFKASDNGDLSLQCCHYEGLRFAQE 141

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>TIAR_HUMAN (Q01085) Nucleolysin TIAR (TIA-1-related protein)|
          Length = 375

 Score = 30.8 bits (68), Expect = 2.8
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = -2

Query: 566 KRCGFVQFTSRACAEQAISALNGSQIGSSNVRLSWGRSQNKQPP 435
           K  GFV F ++  AE AI  + G  +G   +R +W     ++PP
Sbjct: 138 KGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWA---TRKPP 178

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>RBPMS_CHICK (Q9W6I1) RNA-binding protein with multiple splicing homolog|
           (RBP-MS) (HEart, RRM Expressed Sequence) (Hermes)
          Length = 200

 Score = 30.8 bits (68), Expect = 2.8
 Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
 Frame = -2

Query: 557 GFVQFTSRACAEQAISALNGSQIGSSN---VRLSWGRSQNK 444
           GFV F SRA AE A +ALNG +    N   +RL + ++  K
Sbjct: 62  GFVTFDSRAGAEAAKNALNGIRFDPENPQTLRLEFAKANTK 102

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>AMC1_ORYSA (P27940) Alpha-amylase isozyme C (EC 3.2.1.1) (1,4-alpha-D-glucan|
           glucanohydrolase) (Isozyme 1B)
          Length = 348

 Score = 30.4 bits (67), Expect = 3.6
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = +1

Query: 424 ASCWGGCLFWLRP 462
           A+CWGGC  W RP
Sbjct: 85  ATCWGGCTIWTRP 97

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>NCBP2_MOUSE (Q9CQ49) Nuclear cap-binding protein subunit 2 (20 kDa nuclear|
           cap-binding protein) (NCBP 20 kDa subunit) (CBP20)
          Length = 156

 Score = 30.4 bits (67), Expect = 3.6
 Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
 Frame = -2

Query: 560 CGF--VQFTSRACAEQAISALNGSQIGSSNVRLSW 462
           CGF  V++ SRA AE A+  +NG+++    +R  W
Sbjct: 81  CGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDW 115

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>NCBP2_HUMAN (P52298) Nuclear cap-binding protein subunit 2 (20 kDa nuclear|
           cap-binding protein) (NCBP 20 kDa subunit) (CBP20)
           (NCBP-interacting protein 1) (NIP1) (Cell
           proliferation-inducing gene 55 protein)
          Length = 156

 Score = 30.4 bits (67), Expect = 3.6
 Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
 Frame = -2

Query: 560 CGF--VQFTSRACAEQAISALNGSQIGSSNVRLSW 462
           CGF  V++ SRA AE A+  +NG+++    +R  W
Sbjct: 81  CGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDW 115

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>NCBP2_BOVIN (Q3ZBJ1) Nuclear cap-binding protein subunit 2|
          Length = 156

 Score = 30.4 bits (67), Expect = 3.6
 Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
 Frame = -2

Query: 560 CGF--VQFTSRACAEQAISALNGSQIGSSNVRLSW 462
           CGF  V++ SRA AE A+  +NG+++    +R  W
Sbjct: 81  CGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDW 115

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>PUB1_YEAST (P32588) Nuclear and cytoplasmic polyadenylated RNA-binding protein|
           PUB1 (ARS consensus-binding protein ACBP-60)
           (Poly(U)-binding protein) (Poly uridylate-binding
           protein)
          Length = 452

 Score = 30.4 bits (67), Expect = 3.6
 Identities = 11/37 (29%), Positives = 22/37 (59%)
 Frame = -2

Query: 557 GFVQFTSRACAEQAISALNGSQIGSSNVRLSWGRSQN 447
           GFV FTS+  A+ A+ ++ G  +    +R++W   ++
Sbjct: 205 GFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKRD 241



 Score = 29.6 bits (65), Expect = 6.2
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = -2

Query: 566 KRCGFVQFTSRACAEQAISALNGSQIGSSNVRLSWGRSQNKQPPQQ 429
           K C F+++ +   A   I AL        N+R  WG+ ++   PQQ
Sbjct: 375 KGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGKERSNFMPQQ 420

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>SLT11_USTMA (Q4PGU6) Pre-mRNA-splicing factor SLT11|
          Length = 324

 Score = 30.0 bits (66), Expect = 4.8
 Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = -2

Query: 560 CGFVQFTSRACAEQAISALNGS-QIGSSNVRLSWGRSQ 450
           C FV F +R  AE A        ++G   +RL WGRS+
Sbjct: 271 CAFVNFATRDHAELAARRCEPKMRLGDKEIRLMWGRSR 308

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>ELAV_DROME (P16914) Protein elav (Embryonic lethal abnormal visual protein)|
          Length = 483

 Score = 30.0 bits (66), Expect = 4.8
 Identities = 12/34 (35%), Positives = 22/34 (64%)
 Frame = -2

Query: 557 GFVQFTSRACAEQAISALNGSQIGSSNVRLSWGR 456
           GFV +     AEQA++ LNG ++ +  +++S+ R
Sbjct: 206 GFVNYVRPQDAEQAVNVLNGLRLQNKTIKVSFAR 239

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>ELAV_DROVI (P23241) Protein elav (Embryonic lethal abnormal visual protein)|
          Length = 519

 Score = 30.0 bits (66), Expect = 4.8
 Identities = 12/34 (35%), Positives = 22/34 (64%)
 Frame = -2

Query: 557 GFVQFTSRACAEQAISALNGSQIGSSNVRLSWGR 456
           GFV +     AEQA++ LNG ++ +  +++S+ R
Sbjct: 242 GFVNYVRPQDAEQAVNVLNGLRLQNKTIKVSFAR 275

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>USH2A_HUMAN (O75445) Usherin precursor (Usher syndrome type-2A protein) (Usher|
            syndrome type IIa protein)
          Length = 5202

 Score = 29.6 bits (65), Expect = 6.2
 Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = +1

Query: 472  RTLELPI*D-PFSALMACSAHALLVNWTNPQ 561
            +TLE P  D P     A SAH++L+NWT P+
Sbjct: 3959 QTLEAPPQDFPAPWAQATSAHSVLLNWTKPE 3989

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>RBPMS_XENLA (Q9YGP5) RNA-binding protein with multiple splicing homolog|
           (RBP-MS) (HEart, RRM Expressed Sequence) (Hermes)
          Length = 196

 Score = 29.6 bits (65), Expect = 6.2
 Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
 Frame = -2

Query: 557 GFVQFTSRACAEQAISALNGSQIGSSN---VRLSWGRSQNK 444
           GFV F +RA AE A +ALNG +    N   +RL + ++  K
Sbjct: 60  GFVTFDNRAGAEAAKNALNGIRFDPENPQTLRLEFAKANTK 100

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>ELAV2_RAT (Q8CH84) ELAV-like protein 2 (Hu-antigen B) (HuB)|
          Length = 359

 Score = 29.3 bits (64), Expect = 8.1
 Identities = 12/34 (35%), Positives = 22/34 (64%)
 Frame = -2

Query: 557 GFVQFTSRACAEQAISALNGSQIGSSNVRLSWGR 456
           GFV +     AE+AI+ LNG ++ +  +++S+ R
Sbjct: 83  GFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR 116

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>ELAV2_PONPY (Q5R9Z6) ELAV-like protein 2|
          Length = 359

 Score = 29.3 bits (64), Expect = 8.1
 Identities = 12/34 (35%), Positives = 22/34 (64%)
 Frame = -2

Query: 557 GFVQFTSRACAEQAISALNGSQIGSSNVRLSWGR 456
           GFV +     AE+AI+ LNG ++ +  +++S+ R
Sbjct: 83  GFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR 116

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>ELAV2_MOUSE (Q60899) ELAV-like protein 2 (Hu-antigen B) (HuB) (ELAV-like|
           neuronal protein 1) (Nervous system-specific RNA-binding
           protein Mel-N1)
          Length = 360

 Score = 29.3 bits (64), Expect = 8.1
 Identities = 12/34 (35%), Positives = 22/34 (64%)
 Frame = -2

Query: 557 GFVQFTSRACAEQAISALNGSQIGSSNVRLSWGR 456
           GFV +     AE+AI+ LNG ++ +  +++S+ R
Sbjct: 83  GFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR 116

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>ELAV2_HUMAN (Q12926) ELAV-like protein 2 (Hu-antigen B) (HuB) (ELAV-like|
           neuronal protein 1) (Nervous system-specific RNA-binding
           protein Hel-N1)
          Length = 359

 Score = 29.3 bits (64), Expect = 8.1
 Identities = 12/34 (35%), Positives = 22/34 (64%)
 Frame = -2

Query: 557 GFVQFTSRACAEQAISALNGSQIGSSNVRLSWGR 456
           GFV +     AE+AI+ LNG ++ +  +++S+ R
Sbjct: 83  GFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR 116

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>YBKC_SCHPO (O94621) Hypothetical RNA-binding protein C1289.12 in chromosome II|
          Length = 352

 Score = 29.3 bits (64), Expect = 8.1
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -2

Query: 557 GFVQFTSRACAEQAISALNGSQIGSSNVRLSWGR 456
           G + F  R  AEQAI+ +N   +    ++LSW R
Sbjct: 212 GRIVFAQRYFAEQAINEMNNFPLHGVRIQLSWAR 245

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>ELAV4_RAT (O09032) ELAV-like protein 4 (Paraneoplastic encephalomyelitis|
           antigen HuD) (Hu-antigen D)
          Length = 373

 Score = 29.3 bits (64), Expect = 8.1
 Identities = 12/34 (35%), Positives = 22/34 (64%)
 Frame = -2

Query: 557 GFVQFTSRACAEQAISALNGSQIGSSNVRLSWGR 456
           GFV +     AE+AI+ LNG ++ +  +++S+ R
Sbjct: 83  GFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR 116

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>ELAV4_HUMAN (P26378) ELAV-like protein 4 (Paraneoplastic encephalomyelitis|
           antigen HuD) (Hu-antigen D)
          Length = 380

 Score = 29.3 bits (64), Expect = 8.1
 Identities = 12/34 (35%), Positives = 22/34 (64%)
 Frame = -2

Query: 557 GFVQFTSRACAEQAISALNGSQIGSSNVRLSWGR 456
           GFV +     AE+AI+ LNG ++ +  +++S+ R
Sbjct: 90  GFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR 123

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>ELAV4_MOUSE (Q61701) ELAV-like protein 4 (Paraneoplastic encephalomyelitis|
           antigen HuD) (Hu-antigen D)
          Length = 385

 Score = 29.3 bits (64), Expect = 8.1
 Identities = 12/34 (35%), Positives = 22/34 (64%)
 Frame = -2

Query: 557 GFVQFTSRACAEQAISALNGSQIGSSNVRLSWGR 456
           GFV +     AE+AI+ LNG ++ +  +++S+ R
Sbjct: 95  GFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR 128

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>RX21_DROME (Q24491) RNA-binding protein Rsf1 (RNA-binding protein Rox21)|
          Length = 197

 Score = 29.3 bits (64), Expect = 8.1
 Identities = 14/38 (36%), Positives = 23/38 (60%)
 Frame = -2

Query: 554 FVQFTSRACAEQAISALNGSQIGSSNVRLSWGRSQNKQ 441
           FV+F  R  AE+A   LNGS++  S +R+   + + +Q
Sbjct: 47  FVEFEHRDDAEKACDILNGSELLGSQLRVEISKGRPRQ 84


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,225,646
Number of Sequences: 219361
Number of extensions: 1194771
Number of successful extensions: 2914
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 2781
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2912
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4700377760
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result