| Clone Name | rbaal33a02 |
|---|---|
| Clone Library Name | barley_pub |
>gb|BT009238.1| Triticum aestivum clone wlk1.pk0001.f8:fis, full insert mRNA sequence Length = 1160 Score = 523 bits (264), Expect = e-145 Identities = 273/276 (98%) Strand = Plus / Minus Query: 292 tgttgctgatcgtaactgccataaccagagtatccatagttttgcatgctaggatcttgc 351 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 847 tgttgctgctcgtaactgccataaccagagtatccatagttttgcatgctaggatcttgc 788 Query: 352 gcattgggtgcaccatagtaagcatcaggaccctgttgatatccatagtagctgttgcca 411 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct: 787 gcattgggtgcaccatagtatgcatcaggaccctgttgatatccatagtagctgttgcca 728 Query: 412 ttaccctggtttgcatcctgctggggaggctgtttgttttggctacggccccatgaaaga 471 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 727 ttaccctggtttgcatcctgctggggaggctgtttgttttggctacggccccatgaaagg 668 Query: 472 cgaacattggaactaccaatctgagacccattcagcgcactgatggcctgctcagcgcac 531 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 667 cgaacattggaactaccaatctgagacccattcagcgcactgatggcctgctcagcgcac 608 Query: 532 gccctgctggtaaattggacaaatccacaacgcttg 567 |||||||||||||||||||||||||||||||||||| Sbjct: 607 gccctgctggtaaattggacaaatccacaacgcttg 572 Score = 297 bits (150), Expect = 2e-77 Identities = 192/202 (95%), Gaps = 3/202 (1%) Strand = Plus / Minus Query: 28 gacatagttcgataattttaaaaccaagnagaagcactgaatagaactagagttactgcc 87 |||||||||||||||||| ||||||||| ||||||||||||||||||||||| ||||||| Sbjct: 1108 gacatagttcgataattt-aaaaccaag-agaagcactgaatagaactagagctactgcc 1051 Query: 88 caccagtcaaagtactactagatacgacccatcttacaaaacaaggacacctatacgatg 147 || ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 1050 caacagtcaaagtactactagatacgacccatcttacaaa-caaggacacctatacgata 992 Query: 148 actcataacgcggtagcattcagttcatgcagctctgaatctctgattgagctccatcgc 207 |||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 991 actcatgacgcggtagcattcagttcatgcagctctgaatctctgattgcgctccatcgc 932 Query: 208 ctcgatggtcactgctgggggg 229 ||| ||||||||||||| |||| Sbjct: 931 ctcaatggtcactgctgtgggg 910
>ref|XM_478418.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1302 Score = 131 bits (66), Expect = 3e-27 Identities = 230/282 (81%), Gaps = 12/282 (4%) Strand = Plus / Minus Query: 295 tgctgatcgtaactgccataaccagagtatccatagt---tttgcatgctaggatcttgc 351 ||||| |||||| ||||||| ||||| |||||||||| ||||| |||||||| || Sbjct: 1169 tgctgttcgtaattgccatagccagaatatccatagtagttttgcgcactaggatcctgt 1110 Query: 352 gcattgggtgcaccatagtaagca---tcaggaccctgttgatatccatagtagctgttg 408 |||||||||||||||||||||| | ||| |||||||| |||||||||||| ||| Sbjct: 1109 gcattgggtgcaccatagtaagaagaatcatagccctgttggtatccatagtag---ttg 1053 Query: 409 ccattaccctggtttgcatcctgctggggaggctgtttgttttggc---tacggccccat 465 ||||| | |||||| |||||||||||||||| ||| ||||| || ||||||||||| Sbjct: 1052 ccattccactggttggcatcctgctggggagcctgcttgttctgaggagtacggccccat 993 Query: 466 gaaagacgaacattggaactaccaatctgagacccattcagcgcactgatggcctgctca 525 ||||| ||||| | | |||||||||||||||||||||| ||| |||||| | ||| Sbjct: 992 gaaagccgaacttgctgcccaccaatctgagacccattcagcacacggatggcttcttca 933 Query: 526 gcgcacgccctgctggtaaattggacaaatccacaacgcttg 567 || | | |||||| ||||||||||||||||||||||||||| Sbjct: 932 gcagatgacctgctagtaaattggacaaatccacaacgcttg 891
>dbj|AK061900.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-041-H03, full insert sequence Length = 1152 Score = 131 bits (66), Expect = 3e-27 Identities = 230/282 (81%), Gaps = 12/282 (4%) Strand = Plus / Minus Query: 295 tgctgatcgtaactgccataaccagagtatccatagt---tttgcatgctaggatcttgc 351 ||||| |||||| ||||||| ||||| |||||||||| ||||| |||||||| || Sbjct: 765 tgctgttcgtaattgccatagccagaatatccatagtagttttgcgcactaggatcctgt 706 Query: 352 gcattgggtgcaccatagtaagca---tcaggaccctgttgatatccatagtagctgttg 408 |||||||||||||||||||||| | ||| |||||||| |||||||||||| ||| Sbjct: 705 gcattgggtgcaccatagtaagaagaatcatagccctgttggtatccatagtag---ttg 649 Query: 409 ccattaccctggtttgcatcctgctggggaggctgtttgttttggc---tacggccccat 465 ||||| | |||||| |||||||||||||||| ||| ||||| || ||||||||||| Sbjct: 648 ccattccactggttggcatcctgctggggagcctgcttgttctgaggagtacggccccat 589 Query: 466 gaaagacgaacattggaactaccaatctgagacccattcagcgcactgatggcctgctca 525 ||||| ||||| | | |||||||||||||||||||||| ||| |||||| | ||| Sbjct: 588 gaaagccgaacttgctgcccaccaatctgagacccattcagcacacggatggcttcttca 529 Query: 526 gcgcacgccctgctggtaaattggacaaatccacaacgcttg 567 || | | |||||| ||||||||||||||||||||||||||| Sbjct: 528 gcagatgacctgctagtaaattggacaaatccacaacgcttg 487
>dbj|AK065559.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013031C16, full insert sequence Length = 1693 Score = 131 bits (66), Expect = 3e-27 Identities = 230/282 (81%), Gaps = 12/282 (4%) Strand = Plus / Minus Query: 295 tgctgatcgtaactgccataaccagagtatccatagt---tttgcatgctaggatcttgc 351 ||||| |||||| ||||||| ||||| |||||||||| ||||| |||||||| || Sbjct: 1419 tgctgttcgtaattgccatagccagaatatccatagtagttttgcgcactaggatcctgt 1360 Query: 352 gcattgggtgcaccatagtaagca---tcaggaccctgttgatatccatagtagctgttg 408 |||||||||||||||||||||| | ||| |||||||| |||||||||||| ||| Sbjct: 1359 gcattgggtgcaccatagtaagaagaatcatagccctgttggtatccatagtag---ttg 1303 Query: 409 ccattaccctggtttgcatcctgctggggaggctgtttgttttggc---tacggccccat 465 ||||| | |||||| |||||||||||||||| ||| ||||| || ||||||||||| Sbjct: 1302 ccattccactggttggcatcctgctggggagcctgcttgttctgaggagtacggccccat 1243 Query: 466 gaaagacgaacattggaactaccaatctgagacccattcagcgcactgatggcctgctca 525 ||||| ||||| | | |||||||||||||||||||||| ||| |||||| | ||| Sbjct: 1242 gaaagccgaacttgctgcccaccaatctgagacccattcagcacacggatggcttcttca 1183 Query: 526 gcgcacgccctgctggtaaattggacaaatccacaacgcttg 567 || | | |||||| ||||||||||||||||||||||||||| Sbjct: 1182 gcagatgacctgctagtaaattggacaaatccacaacgcttg 1141
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 81.8 bits (41), Expect = 2e-12 Identities = 125/151 (82%), Gaps = 9/151 (5%) Strand = Plus / Minus Query: 295 tgctgatcgtaactgccataaccagagtatccatagt---tttgcatgctaggatcttgc 351 ||||| |||||| ||||||| ||||| |||||||||| ||||| |||||||| || Sbjct: 19870510 tgctgttcgtaattgccatagccagaatatccatagtagttttgcgcactaggatcctgt 19870451 Query: 352 gcattgggtgcaccatagt---aagcatcaggaccctgttgatatccatagtagctgttg 408 ||||||||||||||||||| ||| |||| |||||||| ||||||||||| |||| Sbjct: 19870450 gcattgggtgcaccatagtaagaagaatcatagccctgttggtatccatagta---gttg 19870394 Query: 409 ccattaccctggtttgcatcctgctggggag 439 ||||| | |||||| |||||||||||||||| Sbjct: 19870393 ccattccactggttggcatcctgctggggag 19870363 Score = 60.0 bits (30), Expect = 8e-06 Identities = 33/34 (97%) Strand = Plus / Minus Query: 534 cctgctggtaaattggacaaatccacaacgcttg 567 |||||| ||||||||||||||||||||||||||| Sbjct: 19870085 cctgctagtaaattggacaaatccacaacgcttg 19870052 Score = 50.1 bits (25), Expect = 0.008 Identities = 31/33 (93%) Strand = Plus / Minus Query: 486 accaatctgagacccattcagcgcactgatggc 518 |||||||||||||||||||||| ||| |||||| Sbjct: 19870228 accaatctgagacccattcagcacacggatggc 19870196
>dbj|AP005103.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0036M16 Length = 158880 Score = 81.8 bits (41), Expect = 2e-12 Identities = 125/151 (82%), Gaps = 9/151 (5%) Strand = Plus / Minus Query: 295 tgctgatcgtaactgccataaccagagtatccatagt---tttgcatgctaggatcttgc 351 ||||| |||||| ||||||| ||||| |||||||||| ||||| |||||||| || Sbjct: 35160 tgctgttcgtaattgccatagccagaatatccatagtagttttgcgcactaggatcctgt 35101 Query: 352 gcattgggtgcaccatagt---aagcatcaggaccctgttgatatccatagtagctgttg 408 ||||||||||||||||||| ||| |||| |||||||| ||||||||||| |||| Sbjct: 35100 gcattgggtgcaccatagtaagaagaatcatagccctgttggtatccatagta---gttg 35044 Query: 409 ccattaccctggtttgcatcctgctggggag 439 ||||| | |||||| |||||||||||||||| Sbjct: 35043 ccattccactggttggcatcctgctggggag 35013 Score = 60.0 bits (30), Expect = 8e-06 Identities = 33/34 (97%) Strand = Plus / Minus Query: 534 cctgctggtaaattggacaaatccacaacgcttg 567 |||||| ||||||||||||||||||||||||||| Sbjct: 34735 cctgctagtaaattggacaaatccacaacgcttg 34702 Score = 50.1 bits (25), Expect = 0.008 Identities = 31/33 (93%) Strand = Plus / Minus Query: 486 accaatctgagacccattcagcgcactgatggc 518 |||||||||||||||||||||| ||| |||||| Sbjct: 34878 accaatctgagacccattcagcacacggatggc 34846
>dbj|AP005320.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0650C03 Length = 144337 Score = 81.8 bits (41), Expect = 2e-12 Identities = 125/151 (82%), Gaps = 9/151 (5%) Strand = Plus / Minus Query: 295 tgctgatcgtaactgccataaccagagtatccatagt---tttgcatgctaggatcttgc 351 ||||| |||||| ||||||| ||||| |||||||||| ||||| |||||||| || Sbjct: 110669 tgctgttcgtaattgccatagccagaatatccatagtagttttgcgcactaggatcctgt 110610 Query: 352 gcattgggtgcaccatagt---aagcatcaggaccctgttgatatccatagtagctgttg 408 ||||||||||||||||||| ||| |||| |||||||| ||||||||||| |||| Sbjct: 110609 gcattgggtgcaccatagtaagaagaatcatagccctgttggtatccatagta---gttg 110553 Query: 409 ccattaccctggtttgcatcctgctggggag 439 ||||| | |||||| |||||||||||||||| Sbjct: 110552 ccattccactggttggcatcctgctggggag 110522 Score = 60.0 bits (30), Expect = 8e-06 Identities = 33/34 (97%) Strand = Plus / Minus Query: 534 cctgctggtaaattggacaaatccacaacgcttg 567 |||||| ||||||||||||||||||||||||||| Sbjct: 110244 cctgctagtaaattggacaaatccacaacgcttg 110211 Score = 50.1 bits (25), Expect = 0.008 Identities = 31/33 (93%) Strand = Plus / Minus Query: 486 accaatctgagacccattcagcgcactgatggc 518 |||||||||||||||||||||| ||| |||||| Sbjct: 110387 accaatctgagacccattcagcacacggatggc 110355
>gb|AY110342.1| Zea mays CL866_3 mRNA sequence Length = 853 Score = 60.0 bits (30), Expect = 8e-06 Identities = 93/114 (81%) Strand = Plus / Minus Query: 454 ctacggccccatgaaagacgaacattggaactaccaatctgagacccattcagcgcactg 513 ||||||||||||||||| ||||| || | ||||| |||| |||||||||| | | Sbjct: 373 ctacggccccatgaaagccgaactttctgcccaccaacctgactcccattcagcattcgg 314 Query: 514 atggcctgctcagcgcacgccctgctggtaaattggacaaatccacaacgcttg 567 ||||| | |||||| || | ||||||||||||||| |||||||||||| ||||| Sbjct: 313 atggcttcctcagcacatgacctgctggtaaattgaacaaatccacaatgcttg 260
>gb|BT018852.1| Zea mays clone EL01N0555H08.d mRNA sequence Length = 1780 Score = 58.0 bits (29), Expect = 3e-05 Identities = 55/63 (87%), Gaps = 3/63 (4%) Strand = Plus / Minus Query: 310 ccataaccagagtatccatagt---tttgcatgctaggatcttgcgcattgggtgcacca 366 |||||||||| ||||||||||| |||| ||||| || ||||| ||||||||||||||| Sbjct: 1452 ccataaccagggtatccatagtagttttgaatgcttgggtcttgtgcattgggtgcacca 1393 Query: 367 tag 369 ||| Sbjct: 1392 tag 1390 Score = 54.0 bits (27), Expect = 5e-04 Identities = 48/55 (87%) Strand = Plus / Minus Query: 513 gatggcctgctcagcgcacgccctgctggtaaattggacaaatccacaacgcttg 567 |||||| | |||||| || | ||||||||||||||| |||||||||||| ||||| Sbjct: 1234 gatggcttcctcagcacatgacctgctggtaaattgaacaaatccacaatgcttg 1180
>gb|AY109669.1| Zea mays CL866_1 mRNA sequence Length = 1821 Score = 58.0 bits (29), Expect = 3e-05 Identities = 55/63 (87%), Gaps = 3/63 (4%) Strand = Plus / Minus Query: 310 ccataaccagagtatccatagt---tttgcatgctaggatcttgcgcattgggtgcacca 366 |||||||||| ||||||||||| |||| ||||| || ||||| ||||||||||||||| Sbjct: 1464 ccataaccagggtatccatagtagttttgaatgcttgggtcttgtgcattgggtgcacca 1405 Query: 367 tag 369 ||| Sbjct: 1404 tag 1402 Score = 54.0 bits (27), Expect = 5e-04 Identities = 48/55 (87%) Strand = Plus / Minus Query: 513 gatggcctgctcagcgcacgccctgctggtaaattggacaaatccacaacgcttg 567 |||||| | |||||| || | ||||||||||||||| |||||||||||| ||||| Sbjct: 1246 gatggcttcctcagcacatgacctgctggtaaattgaacaaatccacaatgcttg 1192
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 54.0 bits (27), Expect = 5e-04 Identities = 45/51 (88%) Strand = Plus / Plus Query: 328 tagttttgcatgctaggatcttgcgcattgggtgcaccatagtaagcatca 378 ||||||||| ||||||||| || ||||| |||||||||||||| |||||| Sbjct: 466107 tagttttgcgtgctaggatgctgtgcatttggtgcaccatagtatgcatca 466157
>dbj|AP000616.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, clone:P0514G12 Length = 138929 Score = 54.0 bits (27), Expect = 5e-04 Identities = 45/51 (88%) Strand = Plus / Plus Query: 328 tagttttgcatgctaggatcttgcgcattgggtgcaccatagtaagcatca 378 ||||||||| ||||||||| || ||||| |||||||||||||| |||||| Sbjct: 11615 tagttttgcgtgctaggatgctgtgcatttggtgcaccatagtatgcatca 11665
>dbj|AP001129.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0644B06 Length = 194509 Score = 54.0 bits (27), Expect = 5e-04 Identities = 45/51 (88%) Strand = Plus / Plus Query: 328 tagttttgcatgctaggatcttgcgcattgggtgcaccatagtaagcatca 378 ||||||||| ||||||||| || ||||| |||||||||||||| |||||| Sbjct: 176060 tagttttgcgtgctaggatgctgtgcatttggtgcaccatagtatgcatca 176110
>gb|AC163036.2| Mus musculus BAC clone RP23-219G12 from chromosome 17, complete sequence Length = 217187 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 433 tggggaggctgtttgttttgg 453 ||||||||||||||||||||| Sbjct: 34654 tggggaggctgtttgttttgg 34674
>gb|CP000099.1| Methanosarcina barkeri str. fusaro chromosome 1, complete sequence Length = 4837408 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 386 gttgatatccatagtagctgt 406 ||||||||||||||||||||| Sbjct: 1899502 gttgatatccatagtagctgt 1899482
>gb|AC151266.4| Mus musculus BAC clone RP24-279K24 from chromosome 17, complete sequence Length = 171074 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 433 tggggaggctgtttgttttgg 453 ||||||||||||||||||||| Sbjct: 5270 tggggaggctgtttgttttgg 5250
>gb|AC124421.4| Mus musculus BAC clone RP24-323H7 from chromosome 10, complete sequence Length = 187081 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 416 cctggtttgcatcctgctggggag 439 |||||||| ||||||||||||||| Sbjct: 104882 cctggtttacatcctgctggggag 104905
>dbj|AB234881.1| Trifolium pratense mRNA for putative DNA binding protein, complete cds Length = 3067 Score = 40.1 bits (20), Expect = 7.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 452 ggctacggccccatgaaagacgaacatt 479 |||| |||||||||||||| |||||||| Sbjct: 2650 ggcttcggccccatgaaagccgaacatt 2623
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 7.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 301 tcgtaactgccataaccagagtatccat 328 |||||| ||||||||||| ||||||||| Sbjct: 21584840 tcgtaattgccataaccatagtatccat 21584867
>gb|AE015451.1| Pseudomonas putida KT2440 complete genome Length = 6181863 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 517 gcctgctcagcgcacgccct 536 |||||||||||||||||||| Sbjct: 3632477 gcctgctcagcgcacgccct 3632458
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 7.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 301 tcgtaactgccataaccagagtatccat 328 |||||| ||||||||||| ||||||||| Sbjct: 21513161 tcgtaattgccataaccatagtatccat 21513188
>emb|AL844497.4|CNS08CAU Oryza sativa chromosome 12, . BAC OSJNBa0085B23 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 158019 Score = 40.1 bits (20), Expect = 7.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 301 tcgtaactgccataaccagagtatccat 328 |||||| ||||||||||| ||||||||| Sbjct: 61049 tcgtaattgccataaccatagtatccat 61022
>gb|U31328.1|BDU31328 Blaberus discoidalis hexamerin subunit precursor mRNA, complete cds Length = 2346 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 396 atagtagctgttgccattac 415 |||||||||||||||||||| Sbjct: 969 atagtagctgttgccattac 950 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,905,650 Number of Sequences: 3902068 Number of extensions: 3905650 Number of successful extensions: 65312 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 23 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 65138 Number of HSP's gapped (non-prelim): 161 length of query: 567 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 544 effective length of database: 17,143,297,704 effective search space: 9325953950976 effective search space used: 9325953950976 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)