ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal32l01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PRTP_MCMVS (P30674) Probable processing and transport protein (I... 30 5.1
2CD34_CANFA (Q28270) Hematopoietic progenitor cell antigen CD34 p... 30 8.7

>PRTP_MCMVS (P30674) Probable processing and transport protein (Infected cell|
           protein 18.5)
          Length = 798

 Score = 30.4 bits (67), Expect = 5.1
 Identities = 13/43 (30%), Positives = 26/43 (60%)
 Frame = -3

Query: 154 HCDSELVCITSSQT*RNAKRLVYLYRTVLHSYTAEVVEQTNVI 26
           +CD  +V + S+   RN   +++LYRT+  +  ++   QT+V+
Sbjct: 28  YCDPNIVSMDSTAFRRNGVMVIHLYRTLYPALVSQNAVQTSVL 70



to top

>CD34_CANFA (Q28270) Hematopoietic progenitor cell antigen CD34 precursor|
          Length = 389

 Score = 29.6 bits (65), Expect = 8.7
 Identities = 15/30 (50%), Positives = 20/30 (66%)
 Frame = +2

Query: 71  NSSVQIYKSLCISLSLTGSNAHKFAVTMEP 160
           NSSVQ   SL I++S T +N    +VT+EP
Sbjct: 107 NSSVQSQTSLAITVSFTPTNFSTSSVTLEP 136


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 91,446,373
Number of Sequences: 219361
Number of extensions: 1779496
Number of successful extensions: 4821
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 4653
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4820
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6598423128
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top