ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal32j21
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK121724.1| Oryza sativa (japonica cultivar-group) cDNA clon... 248 2e-62
2dbj|AK103967.1| Oryza sativa (japonica cultivar-group) cDNA clon... 248 2e-62
3dbj|AK058925.1| Oryza sativa (japonica cultivar-group) cDNA clon... 248 2e-62
4gb|AY104394.1| Zea mays PCO081620 mRNA sequence 208 1e-50
5emb|AL606458.5| Oryza sativa genomic DNA, chromosome 4, BAC clon... 151 3e-33
6dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 151 3e-33
7gb|AY109905.1| Zea mays CL6208_1 mRNA sequence 101 2e-18
8gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 44 0.45
9dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.45
10gb|AC105732.3| Oryza sativa (japonica cultivar-group) chromosome... 44 0.45
11dbj|AK120090.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.45
12gb|AC016898.6| Homo sapiens BAC clone RP11-68D19 from 7, complet... 42 1.8
13emb|BX928744.4| Zebrafish DNA sequence from clone CH211-189K9 in... 42 1.8
14ref|NM_200645.1| Danio rerio zgc:66124 (zgc:66124), mRNA 42 1.8
15gb|BC044529.1| Danio rerio, clone IMAGE:3818836, mRNA 42 1.8
16gb|BC057464.1| Danio rerio zgc:66124, mRNA (cDNA clone MGC:66124... 42 1.8
17gb|AC149608.4| Mus musculus BAC clone RP23-436E6 from 8, complet... 42 1.8
18ref|XM_474357.1| Oryza sativa (japonica cultivar-group), predic... 40 7.0
19ref|XM_474356.1| Oryza sativa (japonica cultivar-group), predic... 40 7.0
20emb|BX572596.1| Rhodopseudomonas palustris CGA009 complete genom... 40 7.0
21emb|AL606668.2|OSJN00083 Oryza sativa genomic DNA, chromosome 4,... 40 7.0
22dbj|AK106193.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 7.0
23dbj|AK060170.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 7.0
24emb|AL732349.2| Oryza sativa genomic DNA, chromosome 4, BAC clon... 40 7.0
25emb|AL732353.1| Oryza sativa genomic DNA, chromosome 4, BAC clon... 40 7.0
26dbj|AP003058.2| Homo sapiens genomic DNA, chromosome 11q, clone:... 40 7.0 
>dbj|AK121724.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033081P13, full
           insert sequence
          Length = 589

 Score =  248 bits (125), Expect = 2e-62
 Identities = 179/197 (90%)
 Strand = Plus / Minus

                                                                       
Query: 290 gcttctgatgcttcatcctgtgcaagttgtacatgtgcttggcatggaggtagtatggct 349
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 291 gcttctggtgcttcatcctgtgcaagttgtacatgtgcttggcatggaggtagtagggct 232

                                                                       
Query: 350 catcatgaccgtgccctgacatcctcttcacgccggtagcatggaatccacgtgaagctg 409
           ||||||| || ||||||  |||||||||||| || || |||||||||||||| ||| |||
Sbjct: 231 catcatggccatgccctcccatcctcttcacaccagtggcatggaatccacgagaatctg 172

                                                                       
Query: 410 gcttggaggcctcggcgccgatggcgaggaggcggatcccggatcggaggccgcggttga 469
            |||||||||||| |||||| |||||||||||||||||||||| ||||||||||||||||
Sbjct: 171 tcttggaggcctcagcgccggtggcgaggaggcggatcccggagcggaggccgcggttga 112

                            
Query: 470 gagcagtcgccatcgcc 486
           | || |||||| |||||
Sbjct: 111 gcgccgtcgccgtcgcc 95
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>dbj|AK103967.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-016-A03, full
           insert sequence
          Length = 574

 Score =  248 bits (125), Expect = 2e-62
 Identities = 179/197 (90%)
 Strand = Plus / Minus

                                                                       
Query: 290 gcttctgatgcttcatcctgtgcaagttgtacatgtgcttggcatggaggtagtatggct 349
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 260 gcttctggtgcttcatcctgtgcaagttgtacatgtgcttggcatggaggtagtagggct 201

                                                                       
Query: 350 catcatgaccgtgccctgacatcctcttcacgccggtagcatggaatccacgtgaagctg 409
           ||||||| || ||||||  |||||||||||| || || |||||||||||||| ||| |||
Sbjct: 200 catcatggccatgccctcccatcctcttcacaccagtggcatggaatccacgagaatctg 141

                                                                       
Query: 410 gcttggaggcctcggcgccgatggcgaggaggcggatcccggatcggaggccgcggttga 469
            |||||||||||| |||||| |||||||||||||||||||||| ||||||||||||||||
Sbjct: 140 tcttggaggcctcagcgccggtggcgaggaggcggatcccggagcggaggccgcggttga 81

                            
Query: 470 gagcagtcgccatcgcc 486
           | || |||||| |||||
Sbjct: 80  gcgccgtcgccgtcgcc 64
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>dbj|AK058925.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-009-C02, full
           insert sequence
          Length = 701

 Score =  248 bits (125), Expect = 2e-62
 Identities = 179/197 (90%)
 Strand = Plus / Minus

                                                                       
Query: 290 gcttctgatgcttcatcctgtgcaagttgtacatgtgcttggcatggaggtagtatggct 349
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 302 gcttctggtgcttcatcctgtgcaagttgtacatgtgcttggcatggaggtagtagggct 243

                                                                       
Query: 350 catcatgaccgtgccctgacatcctcttcacgccggtagcatggaatccacgtgaagctg 409
           ||||||| || ||||||  |||||||||||| || || |||||||||||||| ||| |||
Sbjct: 242 catcatggccatgccctcccatcctcttcacaccagtggcatggaatccacgagaatctg 183

                                                                       
Query: 410 gcttggaggcctcggcgccgatggcgaggaggcggatcccggatcggaggccgcggttga 469
            |||||||||||| |||||| |||||||||||||||||||||| ||||||||||||||||
Sbjct: 182 tcttggaggcctcagcgccggtggcgaggaggcggatcccggagcggaggccgcggttga 123

                            
Query: 470 gagcagtcgccatcgcc 486
           | || |||||| |||||
Sbjct: 122 gcgccgtcgccgtcgcc 106
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>gb|AY104394.1| Zea mays PCO081620 mRNA sequence
          Length = 836

 Score =  208 bits (105), Expect = 1e-50
 Identities = 144/157 (91%)
 Strand = Plus / Minus

                                                                       
Query: 294 ctgatgcttcatcctgtgcaagttgtacatgtgcttggcatggaggtagtatggctcatc 353
           |||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||
Sbjct: 291 ctgatgcttcatcctgtgcaagttatacatgtgcttggcatggatgtagtatggctcatc 232

                                                                       
Query: 354 atgaccgtgccctgacatcctcttcacgccggtagcatggaatccacgtgaagctggctt 413
           ||| || ||||||  ||| |||||||||||||| |||||||||||||| |||||||||||
Sbjct: 231 atggccatgccctcccattctcttcacgccggtggcatggaatccacgagaagctggctt 172

                                                
Query: 414 ggaggcctcggcgccgatggcgaggaggcggatcccg 450
           ||| ||||||||||||  |||||||||||||| ||||
Sbjct: 171 ggacgcctcggcgccggcggcgaggaggcggagcccg 135
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>emb|AL606458.5| Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0084A10,
              complete sequence
          Length = 144811

 Score =  151 bits (76), Expect = 3e-33
 Identities = 103/112 (91%)
 Strand = Plus / Plus

                                                                          
Query: 290    gcttctgatgcttcatcctgtgcaagttgtacatgtgcttggcatggaggtagtatggct 349
              ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 124995 gcttctggtgcttcatcctgtgcaagttgtacatgtgcttggcatggaggtagtagggct 125054

                                                                  
Query: 350    catcatgaccgtgccctgacatcctcttcacgccggtagcatggaatccacg 401
              ||||||| || ||||||  |||||||||||| || || ||||||||||||||
Sbjct: 125055 catcatggccatgccctcccatcctcttcacaccagtggcatggaatccacg 125106



 Score =  103 bits (52), Expect = 6e-19
 Identities = 70/76 (92%)
 Strand = Plus / Plus

                                                                          
Query: 411    cttggaggcctcggcgccgatggcgaggaggcggatcccggatcggaggccgcggttgag 470
              |||||||||||| |||||| |||||||||||||||||||||| |||||||||||||||||
Sbjct: 126527 cttggaggcctcagcgccggtggcgaggaggcggatcccggagcggaggccgcggttgag 126586

                              
Query: 471    agcagtcgccatcgcc 486
               || |||||| |||||
Sbjct: 126587 cgccgtcgccgtcgcc 126602
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score =  151 bits (76), Expect = 3e-33
 Identities = 103/112 (91%)
 Strand = Plus / Plus

                                                                            
Query: 290      gcttctgatgcttcatcctgtgcaagttgtacatgtgcttggcatggaggtagtatggct 349
                ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 21475245 gcttctggtgcttcatcctgtgcaagttgtacatgtgcttggcatggaggtagtagggct 21475304

                                                                    
Query: 350      catcatgaccgtgccctgacatcctcttcacgccggtagcatggaatccacg 401
                ||||||| || ||||||  |||||||||||| || || ||||||||||||||
Sbjct: 21475305 catcatggccatgccctcccatcctcttcacaccagtggcatggaatccacg 21475356



 Score =  103 bits (52), Expect = 6e-19
 Identities = 70/76 (92%)
 Strand = Plus / Plus

                                                                            
Query: 411      cttggaggcctcggcgccgatggcgaggaggcggatcccggatcggaggccgcggttgag 470
                |||||||||||| |||||| |||||||||||||||||||||| |||||||||||||||||
Sbjct: 21476777 cttggaggcctcagcgccggtggcgaggaggcggatcccggagcggaggccgcggttgag 21476836

                                
Query: 471      agcagtcgccatcgcc 486
                 || |||||| |||||
Sbjct: 21476837 cgccgtcgccgtcgcc 21476852



 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 420      ctcggcgccgatggcgagga 439
                ||||||||||||||||||||
Sbjct: 34678208 ctcggcgccgatggcgagga 34678189



 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 420      ctcggcgccgatggcgagga 439
                ||||||||||||||||||||
Sbjct: 34675086 ctcggcgccgatggcgagga 34675067
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>gb|AY109905.1| Zea mays CL6208_1 mRNA sequence
          Length = 616

 Score =  101 bits (51), Expect = 2e-18
 Identities = 69/75 (92%)
 Strand = Plus / Minus

                                                                       
Query: 289 agcttctgatgcttcatcctgtgcaagttgtacatgtgcttggcatggaggtagtatggc 348
           |||| ||| |||||||||||||||| |||||||||||||||||| |||| ||||||||||
Sbjct: 256 agctgctggtgcttcatcctgtgcaggttgtacatgtgcttggcgtggacgtagtatggc 197

                          
Query: 349 tcatcatgaccgtgc 363
           ||||||||| |||||
Sbjct: 196 tcatcatgagcgtgc 182
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 422     cggcgccgatggcgaggaggcg 443
               ||||||||||||||||||||||
Sbjct: 6132738 cggcgccgatggcgaggaggcg 6132759
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 422     cggcgccgatggcgaggaggcg 443
               ||||||||||||||||||||||
Sbjct: 6131951 cggcgccgatggcgaggaggcg 6131972
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>gb|AC105732.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0090D11,
              complete sequence
          Length = 174865

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 422    cggcgccgatggcgaggaggcg 443
              ||||||||||||||||||||||
Sbjct: 126214 cggcgccgatggcgaggaggcg 126235
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>dbj|AK120090.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013021A09, full
           insert sequence
          Length = 597

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 422 cggcgccgatggcgaggaggcg 443
           ||||||||||||||||||||||
Sbjct: 104 cggcgccgatggcgaggaggcg 83
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>gb|AC016898.6| Homo sapiens BAC clone RP11-68D19 from 7, complete sequence
          Length = 81117

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 132   aaaatgctaagttcaaaataa 152
             |||||||||||||||||||||
Sbjct: 25834 aaaatgctaagttcaaaataa 25814
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>emb|BX928744.4| Zebrafish DNA sequence from clone CH211-189K9 in linkage group 17,
             complete sequence
          Length = 75766

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 141   agttcaaaataagtccaataa 161
             |||||||||||||||||||||
Sbjct: 34763 agttcaaaataagtccaataa 34743
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>ref|NM_200645.1| Danio rerio zgc:66124 (zgc:66124), mRNA
          Length = 2944

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 141  agttcaaaataagtccaataa 161
            |||||||||||||||||||||
Sbjct: 2069 agttcaaaataagtccaataa 2049
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>gb|BC044529.1| Danio rerio, clone IMAGE:3818836, mRNA
          Length = 2842

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 141 agttcaaaataagtccaataa 161
           |||||||||||||||||||||
Sbjct: 838 agttcaaaataagtccaataa 858
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>gb|BC057464.1| Danio rerio zgc:66124, mRNA (cDNA clone MGC:66124 IMAGE:2640103),
            complete cds
          Length = 2944

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 141  agttcaaaataagtccaataa 161
            |||||||||||||||||||||
Sbjct: 2069 agttcaaaataagtccaataa 2049
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>gb|AC149608.4| Mus musculus BAC clone RP23-436E6 from 8, complete sequence
          Length = 196473

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 126    cttcacaaaatgctaagttca 146
              |||||||||||||||||||||
Sbjct: 111371 cttcacaaaatgctaagttca 111351
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>ref|XM_474357.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 552

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 420 ctcggcgccgatggcgagga 439
           ||||||||||||||||||||
Sbjct: 75  ctcggcgccgatggcgagga 56
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>ref|XM_474356.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 300

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 420 ctcggcgccgatggcgagga 439
           ||||||||||||||||||||
Sbjct: 75  ctcggcgccgatggcgagga 56
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>emb|BX572596.1| Rhodopseudomonas palustris CGA009 complete genome; segment 4/16
          Length = 348942

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 475    gtcgccatcgccttggtgct 494
              ||||||||||||||||||||
Sbjct: 197039 gtcgccatcgccttggtgct 197058
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>emb|AL606668.2|OSJN00083 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0064G10,
              complete sequence
          Length = 150206

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 420    ctcggcgccgatggcgagga 439
              ||||||||||||||||||||
Sbjct: 132329 ctcggcgccgatggcgagga 132310



 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 420    ctcggcgccgatggcgagga 439
              ||||||||||||||||||||
Sbjct: 129207 ctcggcgccgatggcgagga 129188
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>dbj|AK106193.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-208-E04, full
           insert sequence
          Length = 1034

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 420 ctcggcgccgatggcgagga 439
           ||||||||||||||||||||
Sbjct: 269 ctcggcgccgatggcgagga 250
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>dbj|AK060170.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-311-E11, full
           insert sequence
          Length = 930

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 420 ctcggcgccgatggcgagga 439
           ||||||||||||||||||||
Sbjct: 535 ctcggcgccgatggcgagga 554
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>emb|AL732349.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0402C08, complete
             sequence
          Length = 100836

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 420   ctcggcgccgatggcgagga 439
             ||||||||||||||||||||
Sbjct: 76450 ctcggcgccgatggcgagga 76431



 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 420   ctcggcgccgatggcgagga 439
             ||||||||||||||||||||
Sbjct: 73318 ctcggcgccgatggcgagga 73299
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>emb|AL732353.1| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0801D08, complete
             sequence
          Length = 103264

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 420   ctcggcgccgatggcgagga 439
             ||||||||||||||||||||
Sbjct: 21546 ctcggcgccgatggcgagga 21527



 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 420   ctcggcgccgatggcgagga 439
             ||||||||||||||||||||
Sbjct: 18414 ctcggcgccgatggcgagga 18395
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>dbj|AP003058.2| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-736J8, complete
             sequence
          Length = 83000

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 117   cagctttggcttcacaaaat 136
             ||||||||||||||||||||
Sbjct: 73882 cagctttggcttcacaaaat 73901


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,936,572
Number of Sequences: 3902068
Number of extensions: 3936572
Number of successful extensions: 73506
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 73336
Number of HSP's gapped (non-prelim): 170
length of query: 515
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 492
effective length of database: 17,143,297,704
effective search space: 8434502470368
effective search space used: 8434502470368
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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