ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal32j11
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK102436.1| Oryza sativa (japonica cultivar-group) cDNA clon... 103 2e-19
2dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 96 4e-17
3dbj|AP004680.3| Oryza sativa (japonica cultivar-group) genomic D... 96 4e-17
4gb|AY107063.1| Zea mays PCO100324 mRNA sequence 62 5e-07
5gb|AY103770.1| Zea mays PCO100327 mRNA sequence 58 8e-06
6gb|AY111471.1| Zea mays CL42025_1 mRNA sequence 52 5e-04
7gb|BT018028.1| Zea mays clone EL01N0529H05.c mRNA sequence 46 0.032
8gb|AC124672.9| Mus musculus chromosome 1, clone RP23-328G14, com... 40 2.0
9ref|NM_001007895.1| Xenopus tropicalis grhpr protein (grhpr), mRNA 40 2.0
10gb|BC080331.1| Xenopus tropicalis grhpr protein, mRNA (cDNA clon... 40 2.0
11gb|AE015928.1| Bacteroides thetaiotaomicron VPI-5482, complete g... 40 2.0
12emb|CR760190.2| Xenopus tropicalis finished cDNA, clone TNeu118d21 40 2.0
13gb|AC091332.8| Mus musculus chromosome 17, clone RP23-12K1, comp... 40 2.0
14ref|NM_179816.1| Arabidopsis thaliana RPT2 (ROOT PHOTOTROPISM 2)... 38 7.7
15ref|NM_001036369.1| Arabidopsis thaliana RPT2 (ROOT PHOTOTROPISM... 38 7.7
16ref|XM_480400.1| Oryza sativa (japonica cultivar-group), mRNA 38 7.7
17gb|AC133161.4| Mus musculus BAC clone RP24-534C7 from chromosome... 38 7.7
18emb|CR730784.2|CNS0GQTH Tetraodon nigroviridis full-length cDNA 38 7.7
19emb|CR726887.2|CNS0GNT9 Tetraodon nigroviridis full-length cDNA 38 7.7
20emb|CR725656.2|CNS0GMV2 Tetraodon nigroviridis full-length cDNA 38 7.7
21emb|CR666449.2|CNS0FD7B Tetraodon nigroviridis full-length cDNA 38 7.7
22emb|CR662194.2|CNS0F9X4 Tetraodon nigroviridis full-length cDNA 38 7.7
23emb|CR661459.2|CNS0F9CP Tetraodon nigroviridis full-length cDNA 38 7.7
24gb|AC158580.3| Mus musculus chromosome 1, clone RP24-97G17, comp... 38 7.7
25gb|BT000675.1| Arabidopsis thaliana clone RAFL09-15-A18 (R09304)... 38 7.7
26gb|AY056359.1| Arabidopsis thaliana unknown protein (At2g30520) ... 38 7.7
27gb|AY035063.1| Arabidopsis thaliana unknown protein (At2g30520) ... 38 7.7
28gb|AC146695.39| Pan troglodytes clone rp43-48d2, complete sequence 38 7.7
29gb|AC121233.16| Medicago truncatula clone mth2-14g13, complete s... 38 7.7
30gb|U93215.3| Arabidopsis thaliana chromosome 2 BAC T6B20 genomic... 38 7.7
31gb|AC022880.10| Homo sapiens chromosome , clone RP11-436P7, comp... 38 7.7
32dbj|AK222218.1| Arabidopsis thaliana mRNA for hypothetical prote... 38 7.7
33dbj|AK221993.1| Arabidopsis thaliana mRNA for hypothetical prote... 38 7.7
34dbj|AK221310.1| Arabidopsis thaliana mRNA for hypothetical prote... 38 7.7
35gb|AY652767.1| Bombina maxima neuromedin U precursor, mRNA, comp... 38 7.7
36dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 38 7.7
37gb|AC078776.12|AC078776 Homo sapiens 12 BAC RP11-155I9 (Roswell ... 38 7.7
38gb|AC026371.9|AC026371 Homo sapiens 12 BAC RP11-59L15 (Roswell P... 38 7.7
39dbj|AK175297.1| Arabidopsis thaliana mRNA, complete cds, clone: ... 38 7.7
40dbj|AP004646.3| Oryza sativa (japonica cultivar-group) genomic D... 38 7.7
41dbj|AP005440.2| Oryza sativa (japonica cultivar-group) genomic D... 38 7.7
42gb|AF181683.1|AF181683 Arabidopsis thaliana RPT2 (RPT2) mRNA, co... 38 7.7
43dbj|AP001815.4| Homo sapiens genomic DNA, chromosome 11q, clone:... 38 7.7 
>dbj|AK102436.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033093J18, full
           insert sequence
          Length = 1094

 Score =  103 bits (52), Expect = 2e-19
 Identities = 127/152 (83%)
 Strand = Plus / Minus

                                                                       
Query: 9   aataccaatcctcaccctttctgcacagatcctcgtctgaccagctgtcttcagtaaata 68
           |||||||||||| |  ||||||||| |  ||||| |||||||| ||||||||||| ||  
Sbjct: 521 aataccaatcctgattctttctgcataattcctcatctgaccaactgtcttcagtgaaag 462

                                                                       
Query: 69  ctttgcccttgggccagttaggattgttgaacacagcagcacatgaagacactatgacaa 128
           | ||  |||| ||||||||||||||  ||||||| ||||||   |||||||| |||||||
Sbjct: 461 ccttatcctttggccagttaggattactgaacacggcagcaatggaagacaccatgacaa 402

                                           
Query: 129 ctcgcttaacttttgcctcgttgcaagccttc 160
           ||||||||||||||||||| | ||| ||||||
Sbjct: 401 ctcgcttaacttttgcctcatggcaggccttc 370
to top
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 95.6 bits (48), Expect = 4e-17
 Identities = 114/136 (83%)
 Strand = Plus / Plus

                                                                            
Query: 25       ctttctgcacagatcctcgtctgaccagctgtcttcagtaaatactttgcccttgggcca 84
                ||||||||| |  ||||| |||||||| ||||||||||| ||  | ||  |||| |||||
Sbjct: 24691509 ctttctgcataattcctcatctgaccaactgtcttcagtgaaagccttatcctttggcca 24691568

                                                                            
Query: 85       gttaggattgttgaacacagcagcacatgaagacactatgacaactcgcttaacttttgc 144
                |||||||||  ||||||| ||||||   |||||||| |||||||||||||||||||||||
Sbjct: 24691569 gttaggattactgaacacggcagcaatggaagacaccatgacaactcgcttaacttttgc 24691628

                                
Query: 145      ctcgttgcaagccttc 160
                ||| | ||| ||||||
Sbjct: 24691629 ctcatggcaggccttc 24691644
to top
>dbj|AP004680.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBa0029G06
          Length = 169711

 Score = 95.6 bits (48), Expect = 4e-17
 Identities = 114/136 (83%)
 Strand = Plus / Plus

                                                                         
Query: 25    ctttctgcacagatcctcgtctgaccagctgtcttcagtaaatactttgcccttgggcca 84
             ||||||||| |  ||||| |||||||| ||||||||||| ||  | ||  |||| |||||
Sbjct: 25190 ctttctgcataattcctcatctgaccaactgtcttcagtgaaagccttatcctttggcca 25249

                                                                         
Query: 85    gttaggattgttgaacacagcagcacatgaagacactatgacaactcgcttaacttttgc 144
             |||||||||  ||||||| ||||||   |||||||| |||||||||||||||||||||||
Sbjct: 25250 gttaggattactgaacacggcagcaatggaagacaccatgacaactcgcttaacttttgc 25309

                             
Query: 145   ctcgttgcaagccttc 160
             ||| | ||| ||||||
Sbjct: 25310 ctcatggcaggccttc 25325
to top
>gb|AY107063.1| Zea mays PCO100324 mRNA sequence
          Length = 999

 Score = 61.9 bits (31), Expect = 5e-07
 Identities = 121/151 (80%)
 Strand = Plus / Minus

                                                                       
Query: 9   aataccaatcctcaccctttctgcacagatcctcgtctgaccagctgtcttcagtaaata 68
           ||||||||||||||  ||| |||||   |||||||||||||||   |||||||  ||| |
Sbjct: 667 aataccaatcctcattcttcctgcaataatcctcgtctgaccaagagtcttcatcaaaga 608

                                                                       
Query: 69  ctttgcccttgggccagttaggattgttgaacacagcagcacatgaagacactatgacaa 128
           | ||| |||| ||||| ||||| ||  |||| ||||| | |   |||||||| |  ||||
Sbjct: 607 ccttgtccttaggccaattagggttactgaatacagctgaaacagaagacaccaccacaa 548

                                          
Query: 129 ctcgcttaacttttgcctcgttgcaagcctt 159
           ||||||||||||||||||| | |||||||||
Sbjct: 547 ctcgcttaacttttgcctcatagcaagcctt 517
to top
>gb|AY103770.1| Zea mays PCO100327 mRNA sequence
          Length = 1333

 Score = 58.0 bits (29), Expect = 8e-06
 Identities = 53/61 (86%)
 Strand = Plus / Minus

                                                                       
Query: 99  acacagcagcacatgaagacactatgacaactcgcttaacttttgcctcgttgcaagcct 158
           |||||||  ||||||||||||| |  ||||||||| ||||||||||||| | ||||||||
Sbjct: 519 acacagctccacatgaagacaccaccacaactcgcctaacttttgcctcatagcaagcct 460

            
Query: 159 t 159
           |
Sbjct: 459 t 459
to top
>gb|AY111471.1| Zea mays CL42025_1 mRNA sequence
          Length = 830

 Score = 52.0 bits (26), Expect = 5e-04
 Identities = 53/62 (85%)
 Strand = Plus / Plus

                                                                       
Query: 44  tctgaccagctgtcttcagtaaatactttgcccttgggccagttaggattgttgaacaca 103
           ||||||||||| || ||||||||  | | |||||| ||||||| |||||| |||||||||
Sbjct: 718 tctgaccagctatcctcagtaaaggcctcgcccttaggccagtcaggattattgaacaca 777

             
Query: 104 gc 105
           ||
Sbjct: 778 gc 779
to top
>gb|BT018028.1| Zea mays clone EL01N0529H05.c mRNA sequence
          Length = 1336

 Score = 46.1 bits (23), Expect = 0.032
 Identities = 50/59 (84%)
 Strand = Plus / Minus

                                                                      
Query: 101 acagcagcacatgaagacactatgacaactcgcttaacttttgcctcgttgcaagcctt 159
           ||||| ||||||||||| || |  |||||||||  |||||||||||| | |||||||||
Sbjct: 442 acagctgcacatgaagagaccaccacaactcgcccaacttttgcctcatagcaagcctt 384
to top
>gb|AC124672.9| Mus musculus chromosome 1, clone RP23-328G14, complete sequence
          Length = 249008

 Score = 40.1 bits (20), Expect = 2.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 8      aaataccaatcctcaccctt 27
              ||||||||||||||||||||
Sbjct: 185895 aaataccaatcctcaccctt 185876
to top
>ref|NM_001007895.1| Xenopus tropicalis grhpr protein (grhpr), mRNA
          Length = 1306

 Score = 40.1 bits (20), Expect = 2.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 97  gaacacagcagcacatgaag 116
           ||||||||||||||||||||
Sbjct: 49  gaacacagcagcacatgaag 68
to top
>gb|BC080331.1| Xenopus tropicalis grhpr protein, mRNA (cDNA clone MGC:79548
           IMAGE:6978272), complete cds
          Length = 1306

 Score = 40.1 bits (20), Expect = 2.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 97  gaacacagcagcacatgaag 116
           ||||||||||||||||||||
Sbjct: 49  gaacacagcagcacatgaag 68
to top
>gb|AE015928.1| Bacteroides thetaiotaomicron VPI-5482, complete genome
          Length = 6260361

 Score = 40.1 bits (20), Expect = 2.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 139     ttttgcctcgttgcaagcct 158
               ||||||||||||||||||||
Sbjct: 6219576 ttttgcctcgttgcaagcct 6219595



 Score = 40.1 bits (20), Expect = 2.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 139     ttttgcctcgttgcaagcct 158
               ||||||||||||||||||||
Sbjct: 4931151 ttttgcctcgttgcaagcct 4931132



 Score = 40.1 bits (20), Expect = 2.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 139     ttttgcctcgttgcaagcct 158
               ||||||||||||||||||||
Sbjct: 3892025 ttttgcctcgttgcaagcct 3892006



 Score = 40.1 bits (20), Expect = 2.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 139     ttttgcctcgttgcaagcct 158
               ||||||||||||||||||||
Sbjct: 2169749 ttttgcctcgttgcaagcct 2169730



 Score = 40.1 bits (20), Expect = 2.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 139     ttttgcctcgttgcaagcct 158
               ||||||||||||||||||||
Sbjct: 1973884 ttttgcctcgttgcaagcct 1973865



 Score = 40.1 bits (20), Expect = 2.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 139     ttttgcctcgttgcaagcct 158
               ||||||||||||||||||||
Sbjct: 1550856 ttttgcctcgttgcaagcct 1550875



 Score = 40.1 bits (20), Expect = 2.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 139    ttttgcctcgttgcaagcct 158
              ||||||||||||||||||||
Sbjct: 600787 ttttgcctcgttgcaagcct 600768
to top
>emb|CR760190.2| Xenopus tropicalis finished cDNA, clone TNeu118d21
          Length = 1291

 Score = 40.1 bits (20), Expect = 2.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 97  gaacacagcagcacatgaag 116
           ||||||||||||||||||||
Sbjct: 46  gaacacagcagcacatgaag 65
to top
>gb|AC091332.8| Mus musculus chromosome 17, clone RP23-12K1, complete sequence
          Length = 216370

 Score = 40.1 bits (20), Expect = 2.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 97    gaacacagcagcacatgaag 116
             ||||||||||||||||||||
Sbjct: 22724 gaacacagcagcacatgaag 22743
to top
>ref|NM_179816.1| Arabidopsis thaliana RPT2 (ROOT PHOTOTROPISM 2); protein binding
           AT2G30520 (RPT2) transcript variant AT2G30520.1 mRNA,
           complete cds
          Length = 1982

 Score = 38.2 bits (19), Expect = 7.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 141 ttgcctcgttgcaagcctt 159
           |||||||||||||||||||
Sbjct: 557 ttgcctcgttgcaagcctt 539
to top
>ref|NM_001036369.1| Arabidopsis thaliana RPT2 (ROOT PHOTOTROPISM 2); protein binding
           AT2G30520 (RPT2) transcript variant AT2G30520.2 mRNA,
           complete cds
          Length = 2175

 Score = 38.2 bits (19), Expect = 7.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 141 ttgcctcgttgcaagcctt 159
           |||||||||||||||||||
Sbjct: 750 ttgcctcgttgcaagcctt 732
to top
>ref|XM_480400.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 690

 Score = 38.2 bits (19), Expect = 7.7
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                  
Query: 38  tcctcgtctgaccagctgtcttc 60
           ||||| |||||||||||||||||
Sbjct: 494 tcctcatctgaccagctgtcttc 472
to top
>gb|AC133161.4| Mus musculus BAC clone RP24-534C7 from chromosome 1, complete sequence
          Length = 157891

 Score = 38.2 bits (19), Expect = 7.7
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 52    gctgtcttcagtaaatactttgc 74
             ||||||||||||| |||||||||
Sbjct: 28509 gctgtcttcagtatatactttgc 28487
to top
>emb|CR730784.2|CNS0GQTH Tetraodon nigroviridis full-length cDNA
          Length = 1293

 Score = 38.2 bits (19), Expect = 7.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 24  cctttctgcacagatcctc 42
           |||||||||||||||||||
Sbjct: 925 cctttctgcacagatcctc 943
to top
>emb|CR726887.2|CNS0GNT9 Tetraodon nigroviridis full-length cDNA
          Length = 1205

 Score = 38.2 bits (19), Expect = 7.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 24  cctttctgcacagatcctc 42
           |||||||||||||||||||
Sbjct: 938 cctttctgcacagatcctc 956
to top
>emb|CR725656.2|CNS0GMV2 Tetraodon nigroviridis full-length cDNA
          Length = 1203

 Score = 38.2 bits (19), Expect = 7.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 24  cctttctgcacagatcctc 42
           |||||||||||||||||||
Sbjct: 937 cctttctgcacagatcctc 955
to top
>emb|CR666449.2|CNS0FD7B Tetraodon nigroviridis full-length cDNA
          Length = 1303

 Score = 38.2 bits (19), Expect = 7.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 24  cctttctgcacagatcctc 42
           |||||||||||||||||||
Sbjct: 935 cctttctgcacagatcctc 953
to top
>emb|CR662194.2|CNS0F9X4 Tetraodon nigroviridis full-length cDNA
          Length = 967

 Score = 38.2 bits (19), Expect = 7.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 24  cctttctgcacagatcctc 42
           |||||||||||||||||||
Sbjct: 599 cctttctgcacagatcctc 617
to top
>emb|CR661459.2|CNS0F9CP Tetraodon nigroviridis full-length cDNA
          Length = 990

 Score = 38.2 bits (19), Expect = 7.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 24  cctttctgcacagatcctc 42
           |||||||||||||||||||
Sbjct: 622 cctttctgcacagatcctc 640
to top
>gb|AC158580.3| Mus musculus chromosome 1, clone RP24-97G17, complete sequence
          Length = 159618

 Score = 38.2 bits (19), Expect = 7.7
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 52    gctgtcttcagtaaatactttgc 74
             ||||||||||||| |||||||||
Sbjct: 47229 gctgtcttcagtatatactttgc 47251
to top
>gb|BT000675.1| Arabidopsis thaliana clone RAFL09-15-A18 (R09304) unknown protein
           (At2g30520) mRNA, complete cds
          Length = 1986

 Score = 38.2 bits (19), Expect = 7.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 141 ttgcctcgttgcaagcctt 159
           |||||||||||||||||||
Sbjct: 557 ttgcctcgttgcaagcctt 539
to top
>gb|AY056359.1| Arabidopsis thaliana unknown protein (At2g30520) mRNA, complete cds
          Length = 1813

 Score = 38.2 bits (19), Expect = 7.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 141 ttgcctcgttgcaagcctt 159
           |||||||||||||||||||
Sbjct: 535 ttgcctcgttgcaagcctt 517
to top
>gb|AY035063.1| Arabidopsis thaliana unknown protein (At2g30520) mRNA, complete cds
          Length = 1969

 Score = 38.2 bits (19), Expect = 7.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 141 ttgcctcgttgcaagcctt 159
           |||||||||||||||||||
Sbjct: 553 ttgcctcgttgcaagcctt 535
to top
>gb|AC146695.39| Pan troglodytes clone rp43-48d2, complete sequence
          Length = 175208

 Score = 38.2 bits (19), Expect = 7.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 60    cagtaaatactttgccctt 78
             |||||||||||||||||||
Sbjct: 24850 cagtaaatactttgccctt 24832
to top
>gb|AC121233.16| Medicago truncatula clone mth2-14g13, complete sequence
          Length = 129617

 Score = 38.2 bits (19), Expect = 7.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 104  gcagcacatgaagacacta 122
            |||||||||||||||||||
Sbjct: 5232 gcagcacatgaagacacta 5214
to top
>gb|U93215.3| Arabidopsis thaliana chromosome 2 BAC T6B20 genomic sequence, complete
             sequence
          Length = 104861

 Score = 38.2 bits (19), Expect = 7.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 141   ttgcctcgttgcaagcctt 159
             |||||||||||||||||||
Sbjct: 49209 ttgcctcgttgcaagcctt 49191
to top
>gb|AC022880.10| Homo sapiens chromosome , clone RP11-436P7, complete sequence
          Length = 166306

 Score = 38.2 bits (19), Expect = 7.7
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 50     cagctgtcttcagtaaatacttt 72
              ||||||||||||||||| |||||
Sbjct: 107872 cagctgtcttcagtaaaaacttt 107850
to top
>dbj|AK222218.1| Arabidopsis thaliana mRNA for hypothetical protein, complete cds,
           clone: RAFL25-27-G04
          Length = 1977

 Score = 38.2 bits (19), Expect = 7.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 141 ttgcctcgttgcaagcctt 159
           |||||||||||||||||||
Sbjct: 558 ttgcctcgttgcaagcctt 540
to top
>dbj|AK221993.1| Arabidopsis thaliana mRNA for hypothetical protein, complete cds,
           clone: RAFL22-61-M17
          Length = 1971

 Score = 38.2 bits (19), Expect = 7.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 141 ttgcctcgttgcaagcctt 159
           |||||||||||||||||||
Sbjct: 562 ttgcctcgttgcaagcctt 544
to top
>dbj|AK221310.1| Arabidopsis thaliana mRNA for hypothetical protein, complete cds,
           clone: RAFL25-05-B13
          Length = 1969

 Score = 38.2 bits (19), Expect = 7.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 141 ttgcctcgttgcaagcctt 159
           |||||||||||||||||||
Sbjct: 562 ttgcctcgttgcaagcctt 544
to top
>gb|AY652767.1| Bombina maxima neuromedin U precursor, mRNA, complete cds
          Length = 769

 Score = 38.2 bits (19), Expect = 7.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 54  tgtcttcagtaaatacttt 72
           |||||||||||||||||||
Sbjct: 631 tgtcttcagtaaatacttt 613
to top
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score = 38.2 bits (19), Expect = 7.7
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                      
Query: 38      tcctcgtctgaccagctgtcttc 60
               ||||| |||||||||||||||||
Sbjct: 4893105 tcctcatctgaccagctgtcttc 4893127
to top
>gb|AC078776.12|AC078776 Homo sapiens 12 BAC RP11-155I9 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 95801

 Score = 38.2 bits (19), Expect = 7.7
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 87    taggattgttgaacacagcagca 109
             |||| ||||||||||||||||||
Sbjct: 95654 taggcttgttgaacacagcagca 95632
to top
>gb|AC026371.9|AC026371 Homo sapiens 12 BAC RP11-59L15 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 152951

 Score = 38.2 bits (19), Expect = 7.7
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 87     taggattgttgaacacagcagca 109
              |||| ||||||||||||||||||
Sbjct: 152862 taggcttgttgaacacagcagca 152884
to top
>dbj|AK175297.1| Arabidopsis thaliana mRNA, complete cds, clone: RAFL21-73-G18
          Length = 2083

 Score = 38.2 bits (19), Expect = 7.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 141 ttgcctcgttgcaagcctt 159
           |||||||||||||||||||
Sbjct: 750 ttgcctcgttgcaagcctt 732
to top
>dbj|AP004646.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1122_A12
          Length = 149011

 Score = 38.2 bits (19), Expect = 7.7
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 38    tcctcgtctgaccagctgtcttc 60
             ||||| |||||||||||||||||
Sbjct: 52359 tcctcatctgaccagctgtcttc 52381
to top
>dbj|AP005440.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OSJNBa0056D04
          Length = 158118

 Score = 38.2 bits (19), Expect = 7.7
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 38    tcctcgtctgaccagctgtcttc 60
             ||||| |||||||||||||||||
Sbjct: 97899 tcctcatctgaccagctgtcttc 97921
to top
>gb|AF181683.1|AF181683 Arabidopsis thaliana RPT2 (RPT2) mRNA, complete cds
          Length = 1981

 Score = 38.2 bits (19), Expect = 7.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 141 ttgcctcgttgcaagcctt 159
           |||||||||||||||||||
Sbjct: 550 ttgcctcgttgcaagcctt 532
to top
>dbj|AP001815.4| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-97D10, complete
             sequence
          Length = 167653

 Score = 38.2 bits (19), Expect = 7.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 54    tgtcttcagtaaatacttt 72
             |||||||||||||||||||
Sbjct: 65766 tgtcttcagtaaatacttt 65748


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,381,484
Number of Sequences: 3902068
Number of extensions: 1381484
Number of successful extensions: 91534
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 91393
Number of HSP's gapped (non-prelim): 137
length of query: 160
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 138
effective length of database: 17,147,199,772
effective search space: 2366313568536
effective search space used: 2366313568536
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
to top