ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal32i08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_463045.1| Oryza sativa (japonica cultivar-group), mRNA 92 2e-15
2dbj|AK059201.1| Oryza sativa (japonica cultivar-group) cDNA clon... 92 2e-15
3dbj|AK121839.1| Oryza sativa (japonica cultivar-group) cDNA clon... 88 3e-14
4gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 60 8e-06
5gb|AC133333.5| Oryza sativa chromosome 3 BAC OJ1785_A05 genomic ... 60 8e-06
6dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 60 8e-06
7gb|AY103706.1| Zea mays PCO107541 mRNA sequence 46 0.12
8ref|NM_146261.1| Mus musculus cDNA sequence BC031748 (BC031748),... 44 0.45
9gb|BC031748.1| Mus musculus cDNA sequence BC031748, mRNA (cDNA c... 44 0.45
10ref|XM_855641.1| PREDICTED: Canis familiaris similar to solute c... 44 0.45
11ref|XM_845028.1| PREDICTED: Canis familiaris similar to solute c... 44 0.45
12gb|AC124370.3| Mus musculus BAC clone RP24-554F1 from chromosome... 44 0.45
13gb|AC121579.3| Mus musculus BAC clone RP23-255H8 from 3, complet... 44 0.45
14dbj|AK154624.1| Mus musculus NOD-derived CD11c +ve dendritic cel... 44 0.45
15dbj|AK039695.1| Mus musculus adult male spinal cord cDNA, RIKEN ... 44 0.45
16emb|AL954296.9| Mouse DNA sequence from clone RP23-272P2 on chro... 44 0.45
17gb|AC127303.3| Mus musculus BAC clone RP23-280E20 from chromosom... 42 1.8
18gb|AC073848.4|AC073848 Homo sapiens BAC clone RP11-669M16 from 4... 42 1.8
19dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.8
20dbj|AP004753.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.8
21dbj|AP005609.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.8
22emb|BX072557.8| Mouse DNA sequence from clone RP23-79L4 on chrom... 42 1.8
23gb|AE015925.1| Chlamydophila caviae GPIC, complete genome 42 1.8
24ref|NM_179674.1| Arabidopsis thaliana unknown protein AT2G20820 ... 40 7.1
25ref|NM_179675.1| Arabidopsis thaliana unknown protein AT2G20820 ... 40 7.1
26ref|NM_203236.1| Arabidopsis thaliana nucleic acid binding AT5G5... 40 7.1
27ref|NM_125388.3| Arabidopsis thaliana nucleic acid binding AT5G5... 40 7.1
28ref|NM_180898.2| Arabidopsis thaliana nucleic acid binding AT5G5... 40 7.1
29ref|XM_419477.1| PREDICTED: Gallus gallus similar to potassium c... 40 7.1
30gb|AC109831.5| Mus musculus BAC clone RP24-104B17 from chromosom... 40 7.1
31gb|AC137995.31| Medicago truncatula clone mth2-11j1, complete se... 40 7.1
32gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome 40 7.1
33gb|AF339715.1| Arabidopsis thaliana unknown protein (At2g20820) ... 40 7.1
34gb|AF326896.1| Arabidopsis thaliana unknown protein (At2g20820) ... 40 7.1
35emb|BX640434.1| Bordetella parapertussis strain 12822, complete ... 40 7.1
36gb|AY136433.1| Arabidopsis thaliana transcriptional coactivator-... 40 7.1
37emb|CR931731.1| Medicago truncatula chromosome 5 clone mth2-83l1... 40 7.1
38gb|AC161424.3| Mus musculus BAC clone RP23-252J6 from chromosome... 40 7.1
39gb|AC020634.16| Homo sapiens 3 BAC RP11-9N20 (Roswell Park Cance... 40 7.1
40gb|AC021183.6| Homo sapiens BAC clone RP11-737D22 from 4, comple... 40 7.1
41gb|AY054125.1| Arabidopsis thaliana At2g20820/F5H14.21 mRNA, com... 40 7.1
42gb|AF324672.2|AF324672 Arabidopsis thaliana At2g20820 (At2g20820... 40 7.1
43gb|AF380628.1|AF380628 Arabidopsis thaliana At2g20820/F5H14.21 m... 40 7.1
44dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.1
45emb|BX819526.1|CNS0A8V3 Arabidopsis thaliana Full-length cDNA Co... 40 7.1
46emb|BX819202.1|CNS0A8VI Arabidopsis thaliana Full-length cDNA Co... 40 7.1
47emb|BX829952.1|CNS0A07Z Arabidopsis thaliana Full-length cDNA Co... 40 7.1
48emb|BX831891.1|CNS09ZOX Arabidopsis thaliana Full-length cDNA Co... 40 7.1
49emb|BX831701.1|CNS09ZTV Arabidopsis thaliana Full-length cDNA Co... 40 7.1
50emb|BX834051.1|CNS09Z7I Arabidopsis thaliana Full-length cDNA Co... 40 7.1
51gb|AC093892.3| Homo sapiens BAC clone RP11-702L18 from 2, comple... 40 7.1
52gb|AY088684.1| Arabidopsis thaliana clone 91872 mRNA, complete s... 40 7.1
53gb|AY086704.1| Arabidopsis thaliana clone 26907 mRNA, complete s... 40 7.1
54gb|AF250869.1|AF250869 Buttiauxella sp. PNBS sulfonate binding p... 40 7.1
55gb|AF250867.1|AF250867 Pseudomonas sp. Blue1 sulfonate binding p... 40 7.1
56dbj|AP003562.3| Oryza sativa (japonica cultivar-group) genomic D... 40 7.1
57dbj|AB015475.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 40 7.1
58gb|AE000782.1| Archaeoglobus fulgidus DSM 4304, complete genome 40 7.1
59emb|AL691500.7| Mouse DNA sequence from clone RP23-182H15 on chr... 40 7.1

>ref|XM_463045.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 745

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 109/130 (83%)
 Strand = Plus / Minus

                                                                       
Query: 279 caccatatataataccaccccacatggctaagctggctagcacaaagtgctcttccttcc 338
           ||||||| | |||||| |||||||| |||||||||||||||||||| |||||||||||||
Sbjct: 232 caccataaaaaatacctccccacatagctaagctggctagcacaaattgctcttccttcc 173

                                                                       
Query: 339 agttgccggggttcaggggctcctgccacatgttgactttggtcgatccgtggtgatctg 398
           ||||  | |||||||  || || ||||| |||||||| || |  |  || ||||||||||
Sbjct: 172 agttagccgggttcatcggttcttgccaaatgttgaccttcggaggcccatggtgatctg 113

                     
Query: 399 cggcgccggc 408
           | ||||||||
Sbjct: 112 cagcgccggc 103



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>dbj|AK059201.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-024-A09, full
           insert sequence
          Length = 525

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 109/130 (83%)
 Strand = Plus / Minus

                                                                       
Query: 279 caccatatataataccaccccacatggctaagctggctagcacaaagtgctcttccttcc 338
           ||||||| | |||||| |||||||| |||||||||||||||||||| |||||||||||||
Sbjct: 258 caccataaaaaatacctccccacatagctaagctggctagcacaaattgctcttccttcc 199

                                                                       
Query: 339 agttgccggggttcaggggctcctgccacatgttgactttggtcgatccgtggtgatctg 398
           ||||  | |||||||  || || ||||| |||||||| || |  |  || ||||||||||
Sbjct: 198 agttagccgggttcatcggttcttgccaaatgttgaccttcggaggcccatggtgatctg 139

                     
Query: 399 cggcgccggc 408
           | ||||||||
Sbjct: 138 cagcgccggc 129



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>dbj|AK121839.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033100N18, full
           insert sequence
          Length = 645

 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 59/64 (92%)
 Strand = Plus / Minus

                                                                       
Query: 279 caccatatataataccaccccacatggctaagctggctagcacaaagtgctcttccttcc 338
           ||||||| | |||||| |||||||| |||||||||||||||||||| |||||||||||||
Sbjct: 228 caccataaaaaatacctccccacatagctaagctggctagcacaaattgctcttccttcc 169

               
Query: 339 agtt 342
           ||||
Sbjct: 168 agtt 165



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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 42/46 (91%)
 Strand = Plus / Minus

                                                              
Query: 279      caccatatataataccaccccacatggctaagctggctagcacaaa 324
                ||||||| | |||||| |||||||| ||||||||||||||||||||
Sbjct: 21188301 caccataaaaaatacctccccacatagctaagctggctagcacaaa 21188256



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>gb|AC133333.5| Oryza sativa chromosome 3 BAC OJ1785_A05 genomic sequence, complete
             sequence
          Length = 174910

 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 42/46 (91%)
 Strand = Plus / Minus

                                                           
Query: 279   caccatatataataccaccccacatggctaagctggctagcacaaa 324
             ||||||| | |||||| |||||||| ||||||||||||||||||||
Sbjct: 44216 caccataaaaaatacctccccacatagctaagctggctagcacaaa 44171



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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 42/46 (91%)
 Strand = Plus / Minus

                                                              
Query: 279      caccatatataataccaccccacatggctaagctggctagcacaaa 324
                ||||||| | |||||| |||||||| ||||||||||||||||||||
Sbjct: 21181330 caccataaaaaatacctccccacatagctaagctggctagcacaaa 21181285



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>gb|AY103706.1| Zea mays PCO107541 mRNA sequence
          Length = 706

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                          
Query: 314 gctagcacaaagtgctcttccttccagttgc 344
           ||||| |||||||||||||||||||| ||||
Sbjct: 234 gctagaacaaagtgctcttccttccacttgc 204



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>ref|NM_146261.1| Mus musculus cDNA sequence BC031748 (BC031748), mRNA
          Length = 3263

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                          
Query: 208  tgctgctgctggcactgacgctggccccgc 237
            ||||||||||||||||| ||||||| ||||
Sbjct: 1100 tgctgctgctggcactggcgctggcaccgc 1071



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>gb|BC031748.1| Mus musculus cDNA sequence BC031748, mRNA (cDNA clone MGC:19245
            IMAGE:3672969), complete cds
          Length = 3263

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                          
Query: 208  tgctgctgctggcactgacgctggccccgc 237
            ||||||||||||||||| ||||||| ||||
Sbjct: 1100 tgctgctgctggcactggcgctggcaccgc 1071



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>ref|XM_855641.1| PREDICTED: Canis familiaris similar to solute carrier family 22
           member 5, transcript variant 2 (LOC608146), mRNA
          Length = 1698

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 208 tgctgctgctggcactgacgct 229
           ||||||||||||||||||||||
Sbjct: 797 tgctgctgctggcactgacgct 818



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>ref|XM_845028.1| PREDICTED: Canis familiaris similar to solute carrier family 22
           member 5, transcript variant 1 (LOC608146), mRNA
          Length = 1707

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 208 tgctgctgctggcactgacgct 229
           ||||||||||||||||||||||
Sbjct: 797 tgctgctgctggcactgacgct 818



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>gb|AC124370.3| Mus musculus BAC clone RP24-554F1 from chromosome 3, complete sequence
          Length = 181208

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 208   tgctgctgctggcactgacgct 229
             ||||||||||||||||||||||
Sbjct: 36206 tgctgctgctggcactgacgct 36227



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>gb|AC121579.3| Mus musculus BAC clone RP23-255H8 from 3, complete sequence
          Length = 184377

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 208    tgctgctgctggcactgacgct 229
              ||||||||||||||||||||||
Sbjct: 163213 tgctgctgctggcactgacgct 163234



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>dbj|AK154624.1| Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN
            full-length enriched library, clone:F630101J17
            product:hypothetical Serine-rich region profile
            containing protein, full insert sequence
          Length = 4092

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                          
Query: 208  tgctgctgctggcactgacgctggccccgc 237
            ||||||||||||||||| ||||||| ||||
Sbjct: 1138 tgctgctgctggcactggcgctggcaccgc 1109



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>dbj|AK039695.1| Mus musculus adult male spinal cord cDNA, RIKEN full-length enriched
            library, clone:A330089G10 product:hypothetical protein,
            full insert sequence
          Length = 3208

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                          
Query: 208  tgctgctgctggcactgacgctggccccgc 237
            ||||||||||||||||| ||||||| ||||
Sbjct: 1063 tgctgctgctggcactggcgctggcaccgc 1034



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>emb|AL954296.9| Mouse DNA sequence from clone RP23-272P2 on chromosome X, complete
             sequence
          Length = 88296

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                           
Query: 208   tgctgctgctggcactgacgctggccccgc 237
             ||||||||||||||||| ||||||| ||||
Sbjct: 80100 tgctgctgctggcactggcgctggcaccgc 80071



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>gb|AC127303.3| Mus musculus BAC clone RP23-280E20 from chromosome X, complete sequence
          Length = 212318

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 14     atattctcaacttcctgtaat 34
              |||||||||||||||||||||
Sbjct: 192505 atattctcaacttcctgtaat 192525



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>gb|AC073848.4|AC073848 Homo sapiens BAC clone RP11-669M16 from 4, complete sequence
          Length = 163636

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 76    ttcatgatggctgggcagtgcagctcctt 104
             ||||||||||||||||  |||||||||||
Sbjct: 82915 ttcatgatggctgggctttgcagctcctt 82943



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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                             
Query: 25       ttcctgtaatagaagatttgttggatgaa 53
                ||||||| || ||||||||||||||||||
Sbjct: 19958797 ttcctgttattgaagatttgttggatgaa 19958769



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>dbj|AP004753.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0508B05
          Length = 166165

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                           
Query: 25     ttcctgtaatagaagatttgttggatgaa 53
              ||||||| || ||||||||||||||||||
Sbjct: 136398 ttcctgttattgaagatttgttggatgaa 136370



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>dbj|AP005609.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBa0014M17
          Length = 156778

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 25    ttcctgtaatagaagatttgttggatgaa 53
             ||||||| || ||||||||||||||||||
Sbjct: 62918 ttcctgttattgaagatttgttggatgaa 62890



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>emb|BX072557.8| Mouse DNA sequence from clone RP23-79L4 on chromosome X, complete
              sequence
          Length = 198694

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 14     atattctcaacttcctgtaat 34
              |||||||||||||||||||||
Sbjct: 104828 atattctcaacttcctgtaat 104848



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>gb|AE015925.1| Chlamydophila caviae GPIC, complete genome
          Length = 1173390

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 138    tatcgtcaacaacatgcttaa 158
              |||||||||||||||||||||
Sbjct: 217324 tatcgtcaacaacatgcttaa 217304



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>ref|NM_179674.1| Arabidopsis thaliana unknown protein AT2G20820 transcript variant
           AT2G20820.1 mRNA, complete cds
          Length = 596

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                           
Query: 377 ttggtcgatccgtggtgatctgcggcgccggc 408
           ||||| ||||| |||||||| |||||||||||
Sbjct: 178 ttggtagatccatggtgatcagcggcgccggc 147



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>ref|NM_179675.1| Arabidopsis thaliana unknown protein AT2G20820 transcript variant
           AT2G20820.2 mRNA, complete cds
          Length = 597

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                           
Query: 377 ttggtcgatccgtggtgatctgcggcgccggc 408
           ||||| ||||| |||||||| |||||||||||
Sbjct: 229 ttggtagatccatggtgatcagcggcgccggc 198



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>ref|NM_203236.1| Arabidopsis thaliana nucleic acid binding AT5G59950 transcript
           variant AT5G59950.3 mRNA, complete cds
          Length = 1123

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 4   taaataacacatattctcaa 23
           ||||||||||||||||||||
Sbjct: 925 taaataacacatattctcaa 906



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>ref|NM_125388.3| Arabidopsis thaliana nucleic acid binding AT5G59950 transcript
            variant AT5G59950.2 mRNA, complete cds
          Length = 1338

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 4    taaataacacatattctcaa 23
            ||||||||||||||||||||
Sbjct: 1140 taaataacacatattctcaa 1121



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>ref|NM_180898.2| Arabidopsis thaliana nucleic acid binding AT5G59950 transcript
            variant AT5G59950.1 mRNA, complete cds
          Length = 1227

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 4    taaataacacatattctcaa 23
            ||||||||||||||||||||
Sbjct: 1029 taaataacacatattctcaa 1010



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>ref|XM_419477.1| PREDICTED: Gallus gallus similar to potassium channel, subfamily K,
            member 16; pancreatic 2P domain potassium channel TALK-1
            (LOC421423), mRNA
          Length = 1974

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 201  gtgccggtgctgctgctggc 220
            ||||||||||||||||||||
Sbjct: 1054 gtgccggtgctgctgctggc 1073



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>gb|AC109831.5| Mus musculus BAC clone RP24-104B17 from chromosome 9, complete sequence
          Length = 138096

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 173   aggaaataaagctcggatgc 192
             ||||||||||||||||||||
Sbjct: 39877 aggaaataaagctcggatgc 39896



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>gb|AC137995.31| Medicago truncatula clone mth2-11j1, complete sequence
          Length = 146749

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 1     taataaataacacatattctcaac 24
             ||||| ||||||||||||||||||
Sbjct: 13334 taatagataacacatattctcaac 13311



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>gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome
          Length = 4406967

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 468     ccgccgcaagcagacgagac 487
               ||||||||||||||||||||
Sbjct: 3738664 ccgccgcaagcagacgagac 3738683



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>gb|AF339715.1| Arabidopsis thaliana unknown protein (At2g20820) mRNA, complete cds
          Length = 332

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                           
Query: 377 ttggtcgatccgtggtgatctgcggcgccggc 408
           ||||| ||||| |||||||| |||||||||||
Sbjct: 128 ttggtagatccatggtgatcagcggcgccggc 97



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>gb|AF326896.1| Arabidopsis thaliana unknown protein (At2g20820) mRNA, complete cds
          Length = 612

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                           
Query: 377 ttggtcgatccgtggtgatctgcggcgccggc 408
           ||||| ||||| |||||||| |||||||||||
Sbjct: 178 ttggtagatccatggtgatcagcggcgccggc 147



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>emb|BX640434.1| Bordetella parapertussis strain 12822, complete genome; segment 12/14
          Length = 344805

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 201    gtgccggtgctgctgctggc 220
              ||||||||||||||||||||
Sbjct: 171914 gtgccggtgctgctgctggc 171933



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>gb|AY136433.1| Arabidopsis thaliana transcriptional coactivator-like protein
           (At5g59950) mRNA, complete cds
          Length = 1179

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 4   taaataacacatattctcaa 23
           ||||||||||||||||||||
Sbjct: 982 taaataacacatattctcaa 963



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>emb|CR931731.1| Medicago truncatula chromosome 5 clone mth2-83l19, COMPLETE SEQUENCE
          Length = 120299

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 1      taataaataacacatattctcaac 24
              ||||| ||||||||||||||||||
Sbjct: 115508 taatagataacacatattctcaac 115485



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>gb|AC161424.3| Mus musculus BAC clone RP23-252J6 from chromosome 9, complete sequence
          Length = 244497

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 173    aggaaataaagctcggatgc 192
              ||||||||||||||||||||
Sbjct: 225078 aggaaataaagctcggatgc 225097



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>gb|AC020634.16| Homo sapiens 3 BAC RP11-9N20 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 181174

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 85    gctgggcagtgcagctccttaaccttgc 112
             |||||||||||||| |||| ||||||||
Sbjct: 79981 gctgggcagtgcaggtcctgaaccttgc 80008



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>gb|AC021183.6| Homo sapiens BAC clone RP11-737D22 from 4, complete sequence
          Length = 118837

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 99    ctccttaaccttgccagcct 118
             ||||||||||||||||||||
Sbjct: 60489 ctccttaaccttgccagcct 60470



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>gb|AY054125.1| Arabidopsis thaliana At2g20820/F5H14.21 mRNA, complete cds
          Length = 282

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                           
Query: 377 ttggtcgatccgtggtgatctgcggcgccggc 408
           ||||| ||||| |||||||| |||||||||||
Sbjct: 128 ttggtagatccatggtgatcagcggcgccggc 97



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>gb|AF324672.2|AF324672 Arabidopsis thaliana At2g20820 (At2g20820/F5H14.21) mRNA, complete
           cds
          Length = 596

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                           
Query: 377 ttggtcgatccgtggtgatctgcggcgccggc 408
           ||||| ||||| |||||||| |||||||||||
Sbjct: 178 ttggtagatccatggtgatcagcggcgccggc 147



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>gb|AF380628.1|AF380628 Arabidopsis thaliana At2g20820/F5H14.21 mRNA, complete cds
          Length = 596

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                           
Query: 377 ttggtcgatccgtggtgatctgcggcgccggc 408
           ||||| ||||| |||||||| |||||||||||
Sbjct: 178 ttggtagatccatggtgatcagcggcgccggc 147



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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 327      gctcttccttccagttgccg 346
                ||||||||||||||||||||
Sbjct: 18335527 gctcttccttccagttgccg 18335508



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>emb|BX819526.1|CNS0A8V3 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB87ZA12 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 610

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                           
Query: 377 ttggtcgatccgtggtgatctgcggcgccggc 408
           ||||| ||||| |||||||| |||||||||||
Sbjct: 193 ttggtagatccatggtgatcagcggcgccggc 162



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>emb|BX819202.1|CNS0A8VI Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB56ZF10 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 510

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                           
Query: 377 ttggtcgatccgtggtgatctgcggcgccggc 408
           ||||| ||||| |||||||| |||||||||||
Sbjct: 101 ttggtagatccatggtgatcagcggcgccggc 70



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>emb|BX829952.1|CNS0A07Z Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTFB49ZE02 of Flowers and buds of strain col-0 of
            Arabidopsis thaliana (thale cress)
          Length = 1058

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 4    taaataacacatattctcaa 23
            ||||||||||||||||||||
Sbjct: 1029 taaataacacatattctcaa 1010



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>emb|BX831891.1|CNS09ZOX Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTPGH37ZD01 of Hormone Treated Callus of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 961

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 4   taaataacacatattctcaa 23
           ||||||||||||||||||||
Sbjct: 945 taaataacacatattctcaa 926



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>emb|BX831701.1|CNS09ZTV Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTPGH24ZG11 of Hormone Treated Callus of strain col-0
            of Arabidopsis thaliana (thale cress)
          Length = 1170

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 4    taaataacacatattctcaa 23
            ||||||||||||||||||||
Sbjct: 1140 taaataacacatattctcaa 1121



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>emb|BX834051.1|CNS09Z7I Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL92ZD02 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 547

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 4   taaataacacatattctcaa 23
           ||||||||||||||||||||
Sbjct: 509 taaataacacatattctcaa 490



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>gb|AC093892.3| Homo sapiens BAC clone RP11-702L18 from 2, complete sequence
          Length = 111078

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 320   acaaagtgctcttccttcca 339
             ||||||||||||||||||||
Sbjct: 91012 acaaagtgctcttccttcca 90993



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>gb|AY088684.1| Arabidopsis thaliana clone 91872 mRNA, complete sequence
          Length = 576

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                           
Query: 377 ttggtcgatccgtggtgatctgcggcgccggc 408
           ||||| ||||| |||||||| |||||||||||
Sbjct: 208 ttggtagatccatggtgatcagcggcgccggc 177



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>gb|AY086704.1| Arabidopsis thaliana clone 26907 mRNA, complete sequence
          Length = 1095

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 4    taaataacacatattctcaa 23
            ||||||||||||||||||||
Sbjct: 1004 taaataacacatattctcaa 985



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>gb|AF250869.1|AF250869 Buttiauxella sp. PNBS sulfonate binding protein (ssuA) gene, partial
            cds; sulfonate monooxygenase (ssuD) gene, complete cds;
            and putative sulfonate transporter permease component
            (ssuC) gene, partial cds
          Length = 1879

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 202  tgccggtgctgctgctggca 221
            ||||||||||||||||||||
Sbjct: 1695 tgccggtgctgctgctggca 1714



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>gb|AF250867.1|AF250867 Pseudomonas sp. Blue1 sulfonate binding protein (ssuA) gene, partial
            cds; sulfonate monooxygenase (ssuD) gene, complete cds;
            and putative sulfonate transporter permease component
            (ssuC) gene, partial cds
          Length = 1865

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 202  tgccggtgctgctgctggca 221
            ||||||||||||||||||||
Sbjct: 1695 tgccggtgctgctgctggca 1714



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>dbj|AP003562.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:B1108H10
          Length = 136357

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 327   gctcttccttccagttgccg 346
             ||||||||||||||||||||
Sbjct: 92861 gctcttccttccagttgccg 92842



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>dbj|AB015475.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MMN10
          Length = 84325

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 4     taaataacacatattctcaa 23
             ||||||||||||||||||||
Sbjct: 55127 taaataacacatattctcaa 55108



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>gb|AE000782.1| Archaeoglobus fulgidus DSM 4304, complete genome
          Length = 2178400

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 202    tgccggtgctgctgctggca 221
              ||||||||||||||||||||
Sbjct: 121427 tgccggtgctgctgctggca 121408



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>emb|AL691500.7| Mouse DNA sequence from clone RP23-182H15 on chromosome X, complete
             sequence
          Length = 196828

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 243   ttttgacttcttttttccca 262
             ||||||||||||||||||||
Sbjct: 76209 ttttgacttcttttttccca 76190


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,879,406
Number of Sequences: 3902068
Number of extensions: 4879406
Number of successful extensions: 100516
Number of sequences better than 10.0: 59
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 100275
Number of HSP's gapped (non-prelim): 239
length of query: 525
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 502
effective length of database: 17,143,297,704
effective search space: 8605935447408
effective search space used: 8605935447408
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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