ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal32i07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AK100498.1| Oryza sativa (japonica cultivar-group) cDNA clon... 84 6e-13
2dbj|AK059282.1| Oryza sativa (japonica cultivar-group) cDNA clon... 84 6e-13
3gb|AC087552.3| Oryza sativa (japonica cultivar-group) chromosome... 50 0.008
4dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 50 0.008
5gb|AC093490.2| Oryza sativa (japonica cultivar-group) chromosome... 50 0.008
6gb|AC155301.2| Mus musculus BAC clone RP24-216J21 from chromosom... 42 1.9
7gb|AC010886.10| Homo sapiens BAC clone RP11-370K6 from 2, comple... 42 1.9
8emb|CT010471.11| Mouse DNA sequence from clone RP23-20A5 on chro... 42 1.9
9ref|NM_183615.1| Oryza sativa (japonica cultivar-group), predic... 40 7.5
10ref|XM_638037.1| Dictyostelium discoideum hypothetical protein (... 40 7.5
11gb|AC006043.1| Homo sapiens BAC clone RP11-538D15 from 7, comple... 40 7.5
12ref|XM_537285.2| PREDICTED: Canis familiaris similar to Zinc fin... 40 7.5
13gb|AC073248.5| Homo sapiens BAC clone CTD-2009F14 from 7, comple... 40 7.5
14emb|AL607128.8| Human DNA sequence from clone RP11-444I9 on chro... 40 7.5
15dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.5
16gb|AC114263.2| Dictyostelium discoideum chromosome 2 map 215673-... 40 7.5
17dbj|AP002482.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.5
18ref|XM_215763.3| PREDICTED: Rattus norvegicus tankyrase 1 bindin... 40 7.5
19gb|AC010183.6| Homo sapiens 12 BAC RP11-100F15 (Roswell Park Can... 40 7.5
20dbj|AK068440.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 7.5
21dbj|AK065588.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 7.5
22dbj|AB056779.1| Macaca fascicularis brain cDNA clone:QccE-21474,... 40 7.5

>dbj|AK100498.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023099E10, full
            insert sequence
          Length = 1623

 Score = 83.8 bits (42), Expect = 6e-13
 Identities = 93/110 (84%)
 Strand = Plus / Minus

                                                                        
Query: 261  cccaggtcactcgagatcctgtcgcagagctgtctgtacactgcagtgtcaccatgggac 320
            |||| |||||| |||||||| || ||||||||||| |||| ||||| ||| || | ||||
Sbjct: 1311 cccatgtcactggagatcctctcacagagctgtctatacagtgcagggtctccgttggac 1252

                                                              
Query: 321  ttcctaagctccacaacatgcagagaggggccaagctcaaacacctcggc 370
            |||||||| || |||||||  | ||| |||||||||||||| ||||||||
Sbjct: 1251 ttcctaagttctacaacatttacagaagggccaagctcaaaaacctcggc 1202



 Score = 42.1 bits (21), Expect = 1.9
 Identities = 57/69 (82%)
 Strand = Plus / Minus

                                                                        
Query: 422  tttgagcttgctatgcgctctctgaacatggaaccccgactgtgtcgcggacacttcaat 481
            |||||||||||| ||| | |||||||| ||||| ||| |||  ||||| ||   ||||||
Sbjct: 1150 tttgagcttgctgtgccccctctgaacttggaatcccaactccgtcgctgagctttcaat 1091

                     
Query: 482  cttgtcgaa 490
            |||||||||
Sbjct: 1090 cttgtcgaa 1082



to top

>dbj|AK059282.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-025-D05, full
            insert sequence
          Length = 1671

 Score = 83.8 bits (42), Expect = 6e-13
 Identities = 93/110 (84%)
 Strand = Plus / Minus

                                                                        
Query: 261  cccaggtcactcgagatcctgtcgcagagctgtctgtacactgcagtgtcaccatgggac 320
            |||| |||||| |||||||| || ||||||||||| |||| ||||| ||| || | ||||
Sbjct: 1356 cccatgtcactggagatcctctcacagagctgtctatacagtgcagggtctccgttggac 1297

                                                              
Query: 321  ttcctaagctccacaacatgcagagaggggccaagctcaaacacctcggc 370
            |||||||| || |||||||  | ||| |||||||||||||| ||||||||
Sbjct: 1296 ttcctaagttctacaacatttacagaagggccaagctcaaaaacctcggc 1247



 Score = 42.1 bits (21), Expect = 1.9
 Identities = 57/69 (82%)
 Strand = Plus / Minus

                                                                        
Query: 422  tttgagcttgctatgcgctctctgaacatggaaccccgactgtgtcgcggacacttcaat 481
            |||||||||||| ||| | |||||||| ||||| ||| |||  ||||| ||   ||||||
Sbjct: 1195 tttgagcttgctgtgccccctctgaacttggaatcccaactccgtcgctgagctttcaat 1136

                     
Query: 482  cttgtcgaa 490
            |||||||||
Sbjct: 1135 cttgtcgaa 1127



to top

>gb|AC087552.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0519E07,
              complete sequence
          Length = 151399

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 64/77 (83%)
 Strand = Plus / Plus

                                                                          
Query: 290    ctgtctgtacactgcagtgtcaccatgggacttcctaagctccacaacatgcagagaggg 349
              |||||| |||| ||||| ||| || | |||||||||||| || |||||||  | ||| ||
Sbjct: 146505 ctgtctatacagtgcagggtctccgttggacttcctaagttctacaacatttacagaagg 146564

                               
Query: 350    gccaagctcaaacacct 366
              |||||||||||| ||||
Sbjct: 146565 gccaagctcaaaaacct 146581



to top

>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 64/77 (83%)
 Strand = Plus / Plus

                                                                           
Query: 290     ctgtctgtacactgcagtgtcaccatgggacttcctaagctccacaacatgcagagaggg 349
               |||||| |||| ||||| ||| || | |||||||||||| || |||||||  | ||| ||
Sbjct: 2053636 ctgtctatacagtgcagggtctccgttggacttcctaagttctacaacatttacagaagg 2053695

                                
Query: 350     gccaagctcaaacacct 366
               |||||||||||| ||||
Sbjct: 2053696 gccaagctcaaaaacct 2053712



to top

>gb|AC093490.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1127_B08,
             complete sequence
          Length = 112268

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 64/77 (83%)
 Strand = Plus / Plus

                                                                         
Query: 290   ctgtctgtacactgcagtgtcaccatgggacttcctaagctccacaacatgcagagaggg 349
             |||||| |||| ||||| ||| || | |||||||||||| || |||||||  | ||| ||
Sbjct: 20477 ctgtctatacagtgcagggtctccgttggacttcctaagttctacaacatttacagaagg 20536

                              
Query: 350   gccaagctcaaacacct 366
             |||||||||||| ||||
Sbjct: 20537 gccaagctcaaaaacct 20553



to top

>gb|AC155301.2| Mus musculus BAC clone RP24-216J21 from chromosome 13, complete sequence
          Length = 192299

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 327    agctccacaacatgcagagag 347
              |||||||||||||||||||||
Sbjct: 137093 agctccacaacatgcagagag 137113



to top

>gb|AC010886.10| Homo sapiens BAC clone RP11-370K6 from 2, complete sequence
          Length = 158787

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 529    ttctctgggacactccctctt 549
              |||||||||||||||||||||
Sbjct: 100953 ttctctgggacactccctctt 100933



to top

>emb|CT010471.11| Mouse DNA sequence from clone RP23-20A5 on chromosome 13, complete
              sequence
          Length = 219145

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 327    agctccacaacatgcagagag 347
              |||||||||||||||||||||
Sbjct: 103826 agctccacaacatgcagagag 103846



to top

>ref|NM_183615.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1386

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 47/56 (83%)
 Strand = Plus / Minus

                                                                    
Query: 477  tcaatcttgtcgaacaaatccatcggtggttgtgctgacgtgaacctgatctttct 532
            |||||||||||||| |||||  | ||||  |||| ||| |||||||| ||||||||
Sbjct: 1070 tcaatcttgtcgaataaatcttttggtgaatgtgttgatgtgaaccttatctttct 1015



to top

>ref|XM_638037.1| Dictyostelium discoideum hypothetical protein (DDB0217812), partial
           mRNA
          Length = 1995

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 248 aatcttgtcaattcccaggt 267
           ||||||||||||||||||||
Sbjct: 479 aatcttgtcaattcccaggt 498



to top

>gb|AC006043.1| Homo sapiens BAC clone RP11-538D15 from 7, complete sequence
          Length = 189036

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 239    catcccaaaaatcttgtcaa 258
              ||||||||||||||||||||
Sbjct: 123020 catcccaaaaatcttgtcaa 123001



to top

>ref|XM_537285.2| PREDICTED: Canis familiaris similar to Zinc finger protein 24 (Zinc
            finger protein 191) (Zinc finger protein KOX17) (Retinoic
            acid suppression protein A) (RSG-A) (Zinc finger and SCAN
            domain containing protein 3) (LOC480162), mRNA
          Length = 1569

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 1    taatttcttaaactttcaca 20
            ||||||||||||||||||||
Sbjct: 1293 taatttcttaaactttcaca 1274



to top

>gb|AC073248.5| Homo sapiens BAC clone CTD-2009F14 from 7, complete sequence
          Length = 128294

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 1     taatttcttaaactttcaca 20
             ||||||||||||||||||||
Sbjct: 44061 taatttcttaaactttcaca 44080



to top

>emb|AL607128.8| Human DNA sequence from clone RP11-444I9 on chromosome 10 Contains a
             novel gene (FLJ14374), a CDA11 protein (CDA11) pseudogene
             and two novel genes, complete sequence
          Length = 134242

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 22    gaaatgcataatatctagtt 41
             ||||||||||||||||||||
Sbjct: 87703 gaaatgcataatatctagtt 87684



to top

>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 47/56 (83%)
 Strand = Plus / Minus

                                                                        
Query: 477      tcaatcttgtcgaacaaatccatcggtggttgtgctgacgtgaacctgatctttct 532
                |||||||||||||| |||||  | ||||  |||| ||| |||||||| ||||||||
Sbjct: 10624778 tcaatcttgtcgaataaatcttttggtgaatgtgttgatgtgaaccttatctttct 10624723



to top

>gb|AC114263.2| Dictyostelium discoideum chromosome 2 map 215673-367476 strain AX4,
             complete sequence
          Length = 151802

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 248   aatcttgtcaattcccaggt 267
             ||||||||||||||||||||
Sbjct: 49441 aatcttgtcaattcccaggt 49422



to top

>dbj|AP002482.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
              clone:P0706B05
          Length = 187835

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 47/56 (83%)
 Strand = Plus / Minus

                                                                      
Query: 477    tcaatcttgtcgaacaaatccatcggtggttgtgctgacgtgaacctgatctttct 532
              |||||||||||||| |||||  | ||||  |||| ||| |||||||| ||||||||
Sbjct: 119401 tcaatcttgtcgaataaatcttttggtgaatgtgttgatgtgaaccttatctttct 119346



to top

>ref|XM_215763.3| PREDICTED: Rattus norvegicus tankyrase 1 binding protein 1
            (predicted) (Tnks1bp1_predicted), mRNA
          Length = 6066

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 533  ctgggacactccctcttccc 552
            ||||||||||||||||||||
Sbjct: 1929 ctgggacactccctcttccc 1910



to top

>gb|AC010183.6| Homo sapiens 12 BAC RP11-100F15 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 175504

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 152    cctacagcacagcactcatcacaa 175
              |||||| |||||||||||||||||
Sbjct: 161784 cctacaccacagcactcatcacaa 161807



to top

>dbj|AK068440.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013155G19, full
           insert sequence
          Length = 952

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 47/56 (83%)
 Strand = Plus / Minus

                                                                   
Query: 477 tcaatcttgtcgaacaaatccatcggtggttgtgctgacgtgaacctgatctttct 532
           |||||||||||||| |||||  | ||||  |||| ||| |||||||| ||||||||
Sbjct: 487 tcaatcttgtcgaataaatcttttggtgaatgtgttgatgtgaaccttatctttct 432



to top

>dbj|AK065588.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013034G14, full
            insert sequence
          Length = 1785

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 47/56 (83%)
 Strand = Plus / Minus

                                                                    
Query: 477  tcaatcttgtcgaacaaatccatcggtggttgtgctgacgtgaacctgatctttct 532
            |||||||||||||| |||||  | ||||  |||| ||| |||||||| ||||||||
Sbjct: 1277 tcaatcttgtcgaataaatcttttggtgaatgtgttgatgtgaaccttatctttct 1222



to top

>dbj|AB056779.1| Macaca fascicularis brain cDNA clone:QccE-21474, full insert sequence
          Length = 1926

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 1    taatttcttaaactttcaca 20
            ||||||||||||||||||||
Sbjct: 1688 taatttcttaaactttcaca 1669


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,968,563
Number of Sequences: 3902068
Number of extensions: 3968563
Number of successful extensions: 63923
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 63843
Number of HSP's gapped (non-prelim): 80
length of query: 552
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 529
effective length of database: 17,143,297,704
effective search space: 9068804485416
effective search space used: 9068804485416
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top