ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal32i01 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 50.1 bits (25), Expect = 0.005 Identities = 25/25 (100%) Strand = Plus / Plus Query: 341 accggcgtcgcgttcatgtagaaca 365 ||||||||||||||||||||||||| Sbjct: 17343811 accggcgtcgcgttcatgtagaaca 17343835
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 50.1 bits (25), Expect = 0.005 Identities = 25/25 (100%) Strand = Plus / Plus Query: 341 accggcgtcgcgttcatgtagaaca 365 ||||||||||||||||||||||||| Sbjct: 17298182 accggcgtcgcgttcatgtagaaca 17298206
>emb|AL713927.3|CNS07YP4 Oryza sativa chromosome 12, . BAC OSJNBa0021B03 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 154826 Score = 50.1 bits (25), Expect = 0.005 Identities = 25/25 (100%) Strand = Plus / Minus Query: 341 accggcgtcgcgttcatgtagaaca 365 ||||||||||||||||||||||||| Sbjct: 59558 accggcgtcgcgttcatgtagaaca 59534
>gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, complete genome Length = 3561584 Score = 46.1 bits (23), Expect = 0.082 Identities = 29/31 (93%) Strand = Plus / Plus Query: 258 ccttgccgacgttgatcacgacgacgtggtc 288 ||||| || |||||||||||||||||||||| Sbjct: 3505081 ccttgtcggcgttgatcacgacgacgtggtc 3505111
>emb|BX005072.20| Human DNA sequence from clone XXyac-59F3 on chromosome 10 Contains the 5' end of a novel gene, a novel gene (MGC35285) and a CpG island, complete sequence Length = 97407 Score = 44.1 bits (22), Expect = 0.32 Identities = 25/26 (96%) Strand = Plus / Minus Query: 300 ccttccatgcctctttcccctccttg 325 |||||||| ||||||||||||||||| Sbjct: 44275 ccttccatacctctttcccctccttg 44250
>emb|AL450334.15| Human DNA sequence from clone RP11-556L1 on chromosome 10 Contains gene DKFZP566K0524, the gene for a novel protein similar to tyrosine phosphatase (MGC35285), the 3' end of a KIAA0187 pseudogene, the 3' end of a novel gene, the gene for a novel protein similar to ARF GTPase-activating protein (MRIP2) and a CpG island, complete sequence Length = 171930 Score = 44.1 bits (22), Expect = 0.32 Identities = 25/26 (96%) Strand = Plus / Minus Query: 300 ccttccatgcctctttcccctccttg 325 |||||||| ||||||||||||||||| Sbjct: 63794 ccttccatacctctttcccctccttg 63769
>gb|AC013284.9| Homo sapiens chromosome 10 clone RP11-13E1, complete sequence Length = 154259 Score = 44.1 bits (22), Expect = 0.32 Identities = 25/26 (96%) Strand = Plus / Plus Query: 300 ccttccatgcctctttcccctccttg 325 |||||||| ||||||||||||||||| Sbjct: 97949 ccttccatacctctttcccctccttg 97974
>gb|AC026739.7| Homo sapiens chromosome 5 clone CTD-2580L4, complete sequence Length = 186308 Score = 44.1 bits (22), Expect = 0.32 Identities = 25/26 (96%) Strand = Plus / Minus Query: 300 ccttccatgcctctttcccctccttg 325 |||||||| ||||||||||||||||| Sbjct: 61153 ccttccatacctctttcccctccttg 61128
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 44.1 bits (22), Expect = 0.32 Identities = 22/22 (100%) Strand = Plus / Minus Query: 108 catgagccatgcatggctgcat 129 |||||||||||||||||||||| Sbjct: 26003275 catgagccatgcatggctgcat 26003254 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 240 cgcacgagctcttgtcggcc 259 |||||||||||||||||||| Sbjct: 23220206 cgcacgagctcttgtcggcc 23220225 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 240 cgcacgagctcttgtcggcc 259 |||||||||||||||||||| Sbjct: 1843717 cgcacgagctcttgtcggcc 1843698
>dbj|AP003887.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1186_G01 Length = 112077 Score = 44.1 bits (22), Expect = 0.32 Identities = 22/22 (100%) Strand = Plus / Minus Query: 108 catgagccatgcatggctgcat 129 |||||||||||||||||||||| Sbjct: 38836 catgagccatgcatggctgcat 38815
>dbj|AP003865.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1081_B12 Length = 124741 Score = 44.1 bits (22), Expect = 0.32 Identities = 22/22 (100%) Strand = Plus / Minus Query: 108 catgagccatgcatggctgcat 129 |||||||||||||||||||||| Sbjct: 88152 catgagccatgcatggctgcat 88131
>gb|AF068845.1|AF068845 Mycobacteriophage TM4, complete genome Length = 52797 Score = 44.1 bits (22), Expect = 0.32 Identities = 28/30 (93%) Strand = Plus / Plus Query: 177 gccccggcgccgccgcctcagcagcgcatc 206 ||||||||||||||||| | |||||||||| Sbjct: 25212 gccccggcgccgccgccgcggcagcgcatc 25241
>gb|AC134516.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone OJA1208D02, complete sequence Length = 131922 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 104 catgcatgagccatgcatggc 124 ||||||||||||||||||||| Sbjct: 34865 catgcatgagccatgcatggc 34885
>gb|AC107314.1| Oryza sativa (japonica cultivar-group) cultivar Nipponbare clone OJ1208D02 from chromosome 10, complete sequence Length = 120132 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 104 catgcatgagccatgcatggc 124 ||||||||||||||||||||| Sbjct: 94997 catgcatgagccatgcatggc 95017
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 104 catgcatgagccatgcatggc 124 ||||||||||||||||||||| Sbjct: 11226877 catgcatgagccatgcatggc 11226897
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 104 catgcatgagccatgcatggc 124 ||||||||||||||||||||| Sbjct: 27454660 catgcatgagccatgcatggc 27454680
>dbj|AP005885.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0657H12 Length = 142688 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 104 catgcatgagccatgcatggc 124 ||||||||||||||||||||| Sbjct: 46382 catgcatgagccatgcatggc 46402
>dbj|AK120810.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023014F11, full insert sequence Length = 1744 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 104 catgcatgagccatgcatggc 124 ||||||||||||||||||||| Sbjct: 1296 catgcatgagccatgcatggc 1276
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 104 catgcatgagccatgcatggc 124 ||||||||||||||||||||| Sbjct: 11233317 catgcatgagccatgcatggc 11233337
>emb|AL732547.8| Mouse DNA sequence from clone RP23-24E11 on chromosome 4, complete sequence Length = 206741 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 177 gccccggcgccgccgcctcagcagc 201 |||||| |||||||||||||||||| Sbjct: 70296 gccccgccgccgccgcctcagcagc 70320
>dbj|AB028130.1| Oryza sativa mRNA for Dof zinc finger protein, complete cds Length = 1550 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 104 catgcatgagccatgcatggc 124 ||||||||||||||||||||| Sbjct: 1424 catgcatgagccatgcatggc 1404
>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence Length = 3587082 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 343 cggcgtcgcgttcatgtaga 362 |||||||||||||||||||| Sbjct: 2170327 cggcgtcgcgttcatgtaga 2170308
>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence Length = 3181762 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 343 cggcgtcgcgttcatgtaga 362 |||||||||||||||||||| Sbjct: 2300040 cggcgtcgcgttcatgtaga 2300059
>gb|AC131343.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0057E15, complete sequence Length = 149035 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 104 catgcatgagccatgcatgg 123 |||||||||||||||||||| Sbjct: 109795 catgcatgagccatgcatgg 109776
>emb|CR954256.1| Anopheles gambiae Pen-1 region; BAC clones 30N20, 10K02, 13E09, 31J16 and 01G10 from library NotreDame1 of Anopheles gambiae (African malaria mosquito) strain PEST Length = 447895 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 1 acgttgatatacagaacaaa 20 |||||||||||||||||||| Sbjct: 309177 acgttgatatacagaacaaa 309196
>gb|AC006044.2| Homo sapiens BAC clone RP11-539B24 from 7, complete sequence Length = 141509 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 102 ctcatgcatgagccatgcat 121 |||||||||||||||||||| Sbjct: 65253 ctcatgcatgagccatgcat 65234
>gb|AF542968.1| Triticum aestivum myo-inositol 1-phosphate synthase-like mRNA, partial sequence Length = 819 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 269 ttgatcacgacgacgtggtc 288 |||||||||||||||||||| Sbjct: 377 ttgatcacgacgacgtggtc 358
>gb|BT009043.1| Triticum aestivum clone wdk5c.pk006.i16:fis, full insert mRNA sequence Length = 790 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 269 ttgatcacgacgacgtggtc 288 |||||||||||||||||||| Sbjct: 54 ttgatcacgacgacgtggtc 35
>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence Length = 3173005 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 343 cggcgtcgcgttcatgtaga 362 |||||||||||||||||||| Sbjct: 461518 cggcgtcgcgttcatgtaga 461537
>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence Length = 2325379 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 343 cggcgtcgcgttcatgtaga 362 |||||||||||||||||||| Sbjct: 1527026 cggcgtcgcgttcatgtaga 1527007
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 104 catgcatgagccatgcatgg 123 |||||||||||||||||||| Sbjct: 16469196 catgcatgagccatgcatgg 16469177
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 104 catgcatgagccatgcatgg 123 |||||||||||||||||||| Sbjct: 2370834 catgcatgagccatgcatgg 2370853
>dbj|AP005250.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBb0009H02 Length = 155388 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 240 cgcacgagctcttgtcggcc 259 |||||||||||||||||||| Sbjct: 126078 cgcacgagctcttgtcggcc 126059
>dbj|AP004693.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0461F06 Length = 147891 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 240 cgcacgagctcttgtcggcc 259 |||||||||||||||||||| Sbjct: 143305 cgcacgagctcttgtcggcc 143324
>dbj|AP004457.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0013B04 Length = 141319 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 240 cgcacgagctcttgtcggcc 259 |||||||||||||||||||| Sbjct: 19557 cgcacgagctcttgtcggcc 19576
>emb|BX842238.2| Mouse DNA sequence from clone RP24-159M2 on chromosome 2, complete sequence Length = 86221 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 305 catgcctctttcccctcctt 324 |||||||||||||||||||| Sbjct: 77280 catgcctctttcccctcctt 77261
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 219 cggcgaccgggcgcacctcggcgc 242 |||||||| ||||||||||||||| Sbjct: 3350100 cggcgaccaggcgcacctcggcgc 3350123
>dbj|AP005473.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0077B15 Length = 139345 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 104 catgcatgagccatgcatgg 123 |||||||||||||||||||| Sbjct: 73842 catgcatgagccatgcatgg 73861
>gb|AC156595.1| Laccaria bicolor clone JGIAHZW-14X, complete sequence Length = 31069 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 125 tgcatctagaccacctcaac 144 |||||||||||||||||||| Sbjct: 23241 tgcatctagaccacctcaac 23222
>gb|AY105872.1| Zea mays PCO079046 mRNA sequence Length = 1346 Score = 40.1 bits (20), Expect = 5.1 Identities = 34/39 (87%) Strand = Plus / Minus Query: 341 accggcgtcgcgttcatgtagaacatgnagaggaccatc 379 ||||||||| |||||||||||||| | |||| |||||| Sbjct: 900 accggcgtcttgttcatgtagaacacgtagagcaccatc 862
>emb|AL442110.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0512B01, complete sequence Length = 140069 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 240 cgcacgagctcttgtcggcc 259 |||||||||||||||||||| Sbjct: 97072 cgcacgagctcttgtcggcc 97053 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 240 cgcacgagctcttgtcggcc 259 |||||||||||||||||||| Sbjct: 40532 cgcacgagctcttgtcggcc 40513
>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence Length = 2914771 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 343 cggcgtcgcgttcatgtaga 362 |||||||||||||||||||| Sbjct: 2522300 cggcgtcgcgttcatgtaga 2522281
>gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete sequence Length = 2648638 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 246 agctcttgtcggccttgccg 265 |||||||||||||||||||| Sbjct: 2085171 agctcttgtcggccttgccg 2085152
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 104 catgcatgagccatgcatgg 123 |||||||||||||||||||| Sbjct: 16560200 catgcatgagccatgcatgg 16560181
>gb|AF056325.1|AF056325 Hordeum vulgare myo-inositol 1-phosphate synthase mRNA, complete cds Length = 2152 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 269 ttgatcacgacgacgtggtc 288 |||||||||||||||||||| Sbjct: 1302 ttgatcacgacgacgtggtc 1283 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,690,216 Number of Sequences: 3902068 Number of extensions: 2690216 Number of successful extensions: 55522 Number of sequences better than 10.0: 45 Number of HSP's better than 10.0 without gapping: 47 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 54552 Number of HSP's gapped (non-prelim): 970 length of query: 379 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 357 effective length of database: 17,147,199,772 effective search space: 6121550318604 effective search space used: 6121550318604 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
